RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 NCBP3Q53F19 620 aaKnown RBP13.58□□□□□ -0.24
USP3-219ENST00000561326 ARHGEF25Q86VW2 580 aa13.58□□□□□ -0.24
USP3-219ENST00000561326 LRRC59Q96AG4 307 aaKnown RBP13.58□□□□□ -0.24
USP3-219ENST00000561326 SALL2Q9Y467 1007 aaPredicted RBP13.58□□□□□ -0.24
USP3-219ENST00000561326 NFAT5O94916 1531 aa13.58□□□□□ -0.24
USP3-219ENST00000561326 PHRF1Q9P1Y6 1649 aaKnown RBP13.57□□□□□ -0.24
USP3-219ENST00000561326 IQSEC2Q5JU85 1478 aa13.57□□□□□ -0.24
USP3-219ENST00000561326 TCP11L2Q8N4U5 519 aa13.57□□□□□ -0.24
USP3-219ENST00000561326 ZBTB7CA1YPR0 619 aa13.56□□□□□ -0.24
USP3-219ENST00000561326 HAP1P54257 671 aaPredicted RBP13.56□□□□□ -0.24
USP3-219ENST00000561326 UBAP1LF5GYI3 381 aa13.55□□□□□ -0.24
USP3-219ENST00000561326 PLEKHF1Q96S99 279 aa13.55□□□□□ -0.24
USP3-219ENST00000561326 RGPD5Q99666 1765 aa13.55□□□□□ -0.24
USP3-219ENST00000561326 SENP3-EIF4A1A0A087X0R7 540 aa13.54□□□□□ -0.24
USP3-219ENST00000561326 HMOX1P09601 288 aa13.54□□□□□ -0.24
USP3-219ENST00000561326 ZC3H6P61129 1189 aaKnown RBP13.54□□□□□ -0.24
USP3-219ENST00000561326 RSPH6AQ9H0K4 717 aa13.54□□□□□ -0.24
USP3-219ENST00000561326 MED1Q15648 1581 aaPredicted RBP13.54□□□□□ -0.24
USP3-219ENST00000561326 AHDC1Q5TGY3 1603 aaPredicted RBP13.53□□□□□ -0.24
USP3-219ENST00000561326 PHLPP1O60346 1717 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 PRKAR2BP31323 418 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 PIP4K2BP78356 416 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 GOLGA2Q08379 1002 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 NEUROD2Q15784 382 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 SULT6B1Q6IMI4 303 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 CERKQ8TCT0 537 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 CABLES1Q8TDN4 633 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 RGPD1P0DJD0 1748 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 CRYBG1Q9Y4K1 1723 aa13.53□□□□□ -0.24
USP3-219ENST00000561326 TMPOP42166 694 aaKnown RBP13.52□□□□□ -0.25
USP3-219ENST00000561326 CCDC27Q2M243 656 aa13.52□□□□□ -0.25
USP3-219ENST00000561326 LTV1Q96GA3 475 aaPredicted RBP13.52□□□□□ -0.25
USP3-219ENST00000561326 DLG5Q8TDM6 1919 aa13.51□□□□□ -0.25
USP3-219ENST00000561326 CPDO75976 1380 aa13.51□□□□□ -0.25
USP3-219ENST00000561326 WDR63Q8IWG1 891 aa13.51□□□□□ -0.25
USP3-219ENST00000561326 EYA1Q99502 592 aa13.51□□□□□ -0.25
USP3-219ENST00000561326 IGSF1Q8N6C5 1336 aa13.5□□□□□ -0.25
USP3-219ENST00000561326 RIPK4P57078 832 aa13.5□□□□□ -0.25
USP3-219ENST00000561326 NFE2L2Q16236 605 aa13.5□□□□□ -0.25
USP3-219ENST00000561326 WWC1Q8IX03 1113 aa13.5□□□□□ -0.25
USP3-219ENST00000561326 RRP7AQ9Y3A4 280 aaKnown RBP13.5□□□□□ -0.25
USP3-219ENST00000561326 RGPD2P0DJD1 1756 aa13.5□□□□□ -0.25
USP3-219ENST00000561326 ABCC6O95255 1503 aa13.49□□□□□ -0.25
USP3-219ENST00000561326 LMOD3Q0VAK6 560 aa13.49□□□□□ -0.25
USP3-219ENST00000561326 ANKRD24Q8TF21 1146 aa13.49□□□□□ -0.25
USP3-219ENST00000561326 PRDM11Q9NQV5 511 aa13.49□□□□□ -0.25
USP3-219ENST00000561326 COL18A1P39060 1754 aa13.49□□□□□ -0.25
USP3-219ENST00000561326 ZNF521Q96K83 1311 aa13.48□□□□□ -0.25
USP3-219ENST00000561326 CALD1Q05682 793 aaKnown RBP13.48□□□□□ -0.25
USP3-219ENST00000561326 ABCA3Q99758 1704 aa13.47□□□□□ -0.25
USP3-219ENST00000561326 KDRP35968 1356 aa13.47□□□□□ -0.25
USP3-219ENST00000561326 KIAA0232Q92628 1395 aa13.47□□□□□ -0.25
USP3-219ENST00000561326 FAM208AQ9UK61 1670 aaKnown RBP13.47□□□□□ -0.25
USP3-219ENST00000561326 E9PSI1 815 aa13.47□□□□□ -0.25
USP3-219ENST00000561326 AEBP1Q8IUX7 1158 aa13.47□□□□□ -0.25
USP3-219ENST00000561326 PHACTR3Q96KR7 559 aa13.47□□□□□ -0.25
USP3-219ENST00000561326 AXIN2Q9Y2T1 843 aa13.47□□□□□ -0.25
USP3-219ENST00000561326 SLFN5Q08AF3 891 aa13.46□□□□□ -0.25
USP3-219ENST00000561326 CHRNA2Q15822 529 aa13.46□□□□□ -0.25
USP3-219ENST00000561326 CDCA7LQ96GN5 454 aa13.46□□□□□ -0.25
USP3-219ENST00000561326 PHF23Q9BUL5 403 aaPredicted RBP13.46□□□□□ -0.25
USP3-219ENST00000561326 COL22A1Q8NFW1 1626 aaPredicted RBP13.46□□□□□ -0.26
USP3-219ENST00000561326 CSB-PGBD3P0DP91 1061 aa13.45□□□□□ -0.26
USP3-219ENST00000561326 NBPF6Q5VWK0 638 aa13.45□□□□□ -0.26
USP3-219ENST00000561326 ILDR1Q86SU0 546 aaPredicted RBP13.45□□□□□ -0.26
USP3-219ENST00000561326 GAS2L2Q8NHY3 880 aa13.45□□□□□ -0.26
USP3-219ENST00000561326 NBPF4Q96M43 638 aa13.45□□□□□ -0.26
USP3-219ENST00000561326 MYH16Q9H6N6 1097 aa13.45□□□□□ -0.26
USP3-219ENST00000561326 IL16Q14005 1332 aa13.44□□□□□ -0.26
USP3-219ENST00000561326 COL16A1Q07092 1604 aaPredicted RBP13.44□□□□□ -0.26
USP3-219ENST00000561326 EVA1CP58658 441 aa13.44□□□□□ -0.26
USP3-219ENST00000561326 NLRP2Q9NX02 1062 aa13.44□□□□□ -0.26
USP3-219ENST00000561326 TRIM35Q9UPQ4 493 aa13.44□□□□□ -0.26
USP3-219ENST00000561326 ERBB3P21860 1342 aa13.43□□□□□ -0.26
USP3-219ENST00000561326 PLEKHO1Q53GL0 409 aaPredicted RBP13.43□□□□□ -0.26
USP3-219ENST00000561326 TRMT2AQ8IZ69 625 aaKnown RBP13.43□□□□□ -0.26
USP3-219ENST00000561326 RTF1Q92541 710 aaKnown RBP13.43□□□□□ -0.26
USP3-219ENST00000561326 FAM83GA6ND36 823 aa13.42□□□□□ -0.26
USP3-219ENST00000561326 HTATSF1O43719 755 aaKnown RBP13.42□□□□□ -0.26
USP3-219ENST00000561326 NEFLP07196 543 aa13.42□□□□□ -0.26
USP3-219ENST00000561326 AMOTQ4VCS5 1084 aa13.42□□□□□ -0.26
USP3-219ENST00000561326 RAPGEF4Q8WZA2 1011 aa13.42□□□□□ -0.26
USP3-219ENST00000561326 COL14A1Q05707 1796 aaKnown RBP13.41□□□□□ -0.26
USP3-219ENST00000561326 DUSP27Q5VZP5 1158 aa13.41□□□□□ -0.26
USP3-219ENST00000561326 USHBP1Q8N6Y0 703 aa13.41□□□□□ -0.26
USP3-219ENST00000561326 SUPT16HQ9Y5B9 1047 aaKnown RBP13.41□□□□□ -0.26
USP3-219ENST00000561326 CAMTA1Q9Y6Y1 1673 aa13.4□□□□□ -0.26
USP3-219ENST00000561326 MTHFSDQ2M296 383 aaKnown RBP13.4□□□□□ -0.26
USP3-219ENST00000561326 RCAN3Q9UKA8 241 aa13.4□□□□□ -0.26
USP3-219ENST00000561326 LMO7Q8WWI1 1683 aa13.4□□□□□ -0.26
USP3-219ENST00000561326 WDR17Q8IZU2 1322 aa13.39□□□□□ -0.27
USP3-219ENST00000561326 GNAT3A8MTJ3 354 aa13.39□□□□□ -0.27
USP3-219ENST00000561326 TATP17735 454 aaPredicted RBP13.39□□□□□ -0.27
USP3-219ENST00000561326 GNAI1P63096 354 aa13.39□□□□□ -0.27
USP3-219ENST00000561326 TOM1L2Q6ZVM7 507 aa13.39□□□□□ -0.27
USP3-219ENST00000561326 NCAPD2Q15021 1401 aa13.39□□□□□ -0.27
USP3-219ENST00000561326 JCADQ9P266 1359 aa13.38□□□□□ -0.27
USP3-219ENST00000561326 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.38□□□□□ -0.271e-7■□□□□ 10.6
USP3-219ENST00000561326 SPG7Q9UQ90 795 aa13.38□□□□□ -0.27
USP3-219ENST00000561326 VIRMAQ69YN4 1812 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms