RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 BLMP54132 1417 aaPredicted RBP17.83■□□□□ 0.45
NEDD8-208ENST00000560427 LTN1O94822 1766 aa17.83■□□□□ 0.44
NEDD8-208ENST00000560427 GLI3P10071 1580 aa17.83■□□□□ 0.44
NEDD8-208ENST00000560427 ILDR2Q71H61 639 aa17.82■□□□□ 0.44
NEDD8-208ENST00000560427 NPC1L1Q9UHC9 1359 aa17.81■□□□□ 0.44
NEDD8-208ENST00000560427 SPATA31A5Q5VU36 1347 aa17.81■□□□□ 0.44
NEDD8-208ENST00000560427 SPATA31A7Q8IWB4 1347 aa17.81■□□□□ 0.44
NEDD8-208ENST00000560427 ZBTB7CA1YPR0 619 aa17.81■□□□□ 0.44
NEDD8-208ENST00000560427 EVA1CP58658 441 aa17.81■□□□□ 0.44
NEDD8-208ENST00000560427 RGS12O14924 1447 aa17.81■□□□□ 0.44
NEDD8-208ENST00000560427 MAP3K19Q56UN5 1328 aa17.8■□□□□ 0.44
NEDD8-208ENST00000560427 CCDC9Q9Y3X0 531 aaKnown RBP17.8■□□□□ 0.44
NEDD8-208ENST00000560427 CRB1P82279 1406 aa17.8■□□□□ 0.44
NEDD8-208ENST00000560427 WDR17Q8IZU2 1322 aa17.79■□□□□ 0.44
NEDD8-208ENST00000560427 PER1O15534 1290 aaPredicted RBP17.79■□□□□ 0.44
NEDD8-208ENST00000560427 AMER1Q5JTC6 1135 aaPredicted RBP17.79■□□□□ 0.44
NEDD8-208ENST00000560427 STRN4Q9NRL3 753 aa17.79■□□□□ 0.44
NEDD8-208ENST00000560427 ERBB3P21860 1342 aa17.78■□□□□ 0.44
NEDD8-208ENST00000560427 SPATA31A1Q5TZJ5 1347 aa17.78■□□□□ 0.44
NEDD8-208ENST00000560427 IP6K1Q92551 441 aa17.78■□□□□ 0.44
NEDD8-208ENST00000560427 AXIN2Q9Y2T1 843 aa17.78■□□□□ 0.44
NEDD8-208ENST00000560427 ONECUT3O60422 494 aaPredicted RBP17.77■□□□□ 0.44
NEDD8-208ENST00000560427 AMPHP49418 695 aa17.77■□□□□ 0.44
NEDD8-208ENST00000560427 THRAP3Q9Y2W1 955 aaKnown RBP17.77■□□□□ 0.44
NEDD8-208ENST00000560427 FLT4P35916 1363 aa17.77■□□□□ 0.43
NEDD8-208ENST00000560427 LARP1Q6PKG0 1096 aaKnown RBP17.76■□□□□ 0.43
NEDD8-208ENST00000560427 FAM208AQ9UK61 1670 aaKnown RBP17.76■□□□□ 0.43
NEDD8-208ENST00000560427 HOXC9P31274 260 aa17.75■□□□□ 0.43
NEDD8-208ENST00000560427 THSD7AQ9UPZ6 1657 aa17.74■□□□□ 0.43
NEDD8-208ENST00000560427 SMG6Q86US8 1419 aaKnown RBP17.74■□□□□ 0.43
NEDD8-208ENST00000560427 CSB-PGBD3P0DP91 1061 aa17.74■□□□□ 0.43
NEDD8-208ENST00000560427 RRS1Q15050 365 aaKnown RBP17.74■□□□□ 0.43
NEDD8-208ENST00000560427 BARGINQ6ZT62 677 aa17.74■□□□□ 0.43
NEDD8-208ENST00000560427 TOM1L2Q6ZVM7 507 aa17.74■□□□□ 0.43
NEDD8-208ENST00000560427 MORC1Q86VD1 984 aa17.74■□□□□ 0.43
NEDD8-208ENST00000560427 TCP11L2Q8N4U5 519 aa17.74■□□□□ 0.43
NEDD8-208ENST00000560427 CARD10Q9BWT7 1032 aa17.73■□□□□ 0.43
NEDD8-208ENST00000560427 INSRP06213 1382 aa17.73■□□□□ 0.43
NEDD8-208ENST00000560427 RGPD5Q99666 1765 aa17.73■□□□□ 0.43
NEDD8-208ENST00000560427 ANKRD24Q8TF21 1146 aa17.72■□□□□ 0.43
NEDD8-208ENST00000560427 PEAK1Q9H792 1746 aa17.72■□□□□ 0.43
NEDD8-208ENST00000560427 FBLN1P23142 703 aa17.71■□□□□ 0.43
NEDD8-208ENST00000560427 FAM98CQ17RN3 349 aaKnown RBP17.71■□□□□ 0.43
NEDD8-208ENST00000560427 POLKQ9UBT6 870 aa17.71■□□□□ 0.43
NEDD8-208ENST00000560427 SEPT12Q8IYM1 358 aa17.7■□□□□ 0.42
NEDD8-208ENST00000560427 CDCA7Q9BWT1 371 aaPredicted RBP17.7■□□□□ 0.42
NEDD8-208ENST00000560427 EMILIN1Q9Y6C2 1016 aa17.7■□□□□ 0.42
NEDD8-208ENST00000560427 USP35Q9P2H5 1018 aa17.69■□□□□ 0.42
NEDD8-208ENST00000560427 WNK3Q9BYP7 1800 aa17.69■□□□□ 0.42
NEDD8-208ENST00000560427 PARP4Q9UKK3 1724 aaKnown RBP17.68■□□□□ 0.42
NEDD8-208ENST00000560427 MAP2P11137 1827 aaKnown RBP17.68■□□□□ 0.42
NEDD8-208ENST00000560427 DISP2A7MBM2 1401 aa17.67■□□□□ 0.42
NEDD8-208ENST00000560427 A0A0G2JS52 829 aa17.67■□□□□ 0.42
NEDD8-208ENST00000560427 SOCS7O14512 581 aa17.67■□□□□ 0.42
NEDD8-208ENST00000560427 TNNT2P45379 298 aaPredicted RBP17.67■□□□□ 0.42
NEDD8-208ENST00000560427 MYT1Q01538 1121 aa17.67■□□□□ 0.42
NEDD8-208ENST00000560427 CC2D1BQ5T0F9 858 aaKnown RBP17.67■□□□□ 0.42
NEDD8-208ENST00000560427 NLRP2Q9NX02 1062 aa17.67■□□□□ 0.42
NEDD8-208ENST00000560427 PPM1GO15355 546 aaPredicted RBP17.66■□□□□ 0.42
NEDD8-208ENST00000560427 HSP90AB2PQ58FF8 381 aa17.66■□□□□ 0.42
NEDD8-208ENST00000560427 KRT27Q7Z3Y8 459 aa17.64■□□□□ 0.41
NEDD8-208ENST00000560427 LTV1Q96GA3 475 aaPredicted RBP17.64■□□□□ 0.41
NEDD8-208ENST00000560427 LRRC37A3O60309 1634 aa17.64■□□□□ 0.41
NEDD8-208ENST00000560427 NCAPD2Q15021 1401 aa17.64■□□□□ 0.41
NEDD8-208ENST00000560427 ZNF316A6NFI3 1004 aaPredicted RBP17.63■□□□□ 0.41
NEDD8-208ENST00000560427 BRWD3Q6RI45 1802 aa17.63■□□□□ 0.41
NEDD8-208ENST00000560427 IL2RBP14784 551 aa17.61■□□□□ 0.41
NEDD8-208ENST00000560427 DDX10Q13206 875 aaKnown RBP17.61■□□□□ 0.41
NEDD8-208ENST00000560427 PLEKHG2Q9H7P9 1386 aa17.61■□□□□ 0.41
NEDD8-208ENST00000560427 TNS2Q63HR2 1409 aa17.61■□□□□ 0.41
NEDD8-208ENST00000560427 PDE3BQ13370 1112 aa17.6■□□□□ 0.41
NEDD8-208ENST00000560427 DDB1Q16531 1140 aa17.6■□□□□ 0.41
NEDD8-208ENST00000560427 PARD3Q8TEW0 1356 aa17.6■□□□□ 0.41
NEDD8-208ENST00000560427 MTHFSP49914 203 aa17.59■□□□□ 0.41
NEDD8-208ENST00000560427 EIF4A2Q14240 407 aaKnown RBP17.59■□□□□ 0.41
NEDD8-208ENST00000560427 NBPF6Q5VWK0 638 aa17.59■□□□□ 0.41
NEDD8-208ENST00000560427 NBPF4Q96M43 638 aa17.59■□□□□ 0.41
NEDD8-208ENST00000560427 OVOS2A0A0G2JMS6 1433 aa17.57■□□□□ 0.4
NEDD8-208ENST00000560427 BCL9O00512 1426 aa17.56■□□□□ 0.4
NEDD8-208ENST00000560427 RGPD2P0DJD1 1756 aa17.56■□□□□ 0.4
NEDD8-208ENST00000560427 IGSF1Q8N6C5 1336 aa17.56■□□□□ 0.4
NEDD8-208ENST00000560427 EXOC5O00471 708 aa17.56■□□□□ 0.4
NEDD8-208ENST00000560427 EYA1Q99502 592 aa17.56■□□□□ 0.4
NEDD8-208ENST00000560427 MEGF6O75095 1541 aa17.56■□□□□ 0.4
NEDD8-208ENST00000560427 RALBP1Q15311 655 aa17.55■□□□□ 0.4
NEDD8-208ENST00000560427 FAM196AQ6ZSG2 479 aa17.55■□□□□ 0.4
NEDD8-208ENST00000560427 CCDC125Q86Z20 511 aa17.55■□□□□ 0.4
NEDD8-208ENST00000560427 RAPGEF4Q8WZA2 1011 aa17.55■□□□□ 0.4
NEDD8-208ENST00000560427 COL3A1P02461 1466 aaPredicted RBP17.55■□□□□ 0.4
NEDD8-208ENST00000560427 PPP2R1AP30153 589 aa17.54■□□□□ 0.4
NEDD8-208ENST00000560427 CNGB1Q14028 1251 aaPredicted RBP17.54■□□□□ 0.4
NEDD8-208ENST00000560427 UPF1Q92900 1129 aaKnown RBP eCLIP17.54■□□□□ 0.43e-7■□□□□ 10.1
NEDD8-208ENST00000560427 CFAP53Q96M91 514 aa17.54■□□□□ 0.4
NEDD8-208ENST00000560427 RGPD1P0DJD0 1748 aa17.54■□□□□ 0.4
NEDD8-208ENST00000560427 TATP17735 454 aaPredicted RBP17.53■□□□□ 0.4
NEDD8-208ENST00000560427 IL13P35225 146 aa17.53■□□□□ 0.4
NEDD8-208ENST00000560427 USHBP1Q8N6Y0 703 aa17.52■□□□□ 0.4
NEDD8-208ENST00000560427 KDRP35968 1356 aa17.52■□□□□ 0.39
NEDD8-208ENST00000560427 DIAPH1O60610 1272 aaKnown RBP17.51■□□□□ 0.39
NEDD8-208ENST00000560427 PKD1L3Q7Z443 1732 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms