RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 EIF5P55010 431 aaKnown RBP16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 ANKRD30AQ9BXX3 1397 aa16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 CCDC69A6NI79 296 aa16.25■□□□□ 0.19
CSPG4P12-202ENST00000559989 PABPN1LA6NDY0 278 aaKnown RBP16.25■□□□□ 0.19
CSPG4P12-202ENST00000559989 MPHOSPH9Q99550 1183 aa16.25■□□□□ 0.19
CSPG4P12-202ENST00000559989 FIBPO43427 364 aa16.25■□□□□ 0.19
CSPG4P12-202ENST00000559989 COMMD10Q9Y6G5 202 aa16.25■□□□□ 0.19
CSPG4P12-202ENST00000559989 DDX46Q7L014 1031 aaKnown RBP16.25■□□□□ 0.19
CSPG4P12-202ENST00000559989 CGNQ9P2M7 1197 aaKnown RBP16.25■□□□□ 0.19
CSPG4P12-202ENST00000559989 SREK1Q8WXA9 508 aaKnown RBP16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 FOXD1Q16676 465 aa16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 TSNARE1Q96NA8 513 aa16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 RBM25P49756 843 aaKnown RBP16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 CCDC178Q5BJE1 867 aa16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 WDR66Q8TBY9 1149 aa16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 LNPKQ9C0E8 428 aa16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 KIF5CO60282 957 aa16.24■□□□□ 0.19
CSPG4P12-202ENST00000559989 EVC2Q86UK5 1308 aa16.23■□□□□ 0.19
CSPG4P12-202ENST00000559989 UBTFL1P0CB47 393 aaPredicted RBP16.23■□□□□ 0.19
CSPG4P12-202ENST00000559989 ZSCAN12O43309 604 aa16.23■□□□□ 0.19
CSPG4P12-202ENST00000559989 NOL3O60936 208 aaKnown RBP16.23■□□□□ 0.19
CSPG4P12-202ENST00000559989 LARP1Q6PKG0 1096 aaKnown RBP16.23■□□□□ 0.19
CSPG4P12-202ENST00000559989 CCDC150Q8NCX0 1101 aa16.23■□□□□ 0.19
CSPG4P12-202ENST00000559989 KRT85P78386 507 aa16.23■□□□□ 0.19
CSPG4P12-202ENST00000559989 CLGNO14967 610 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 WDR33Q9C0J8 1336 aaKnown RBP16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 VPS36Q86VN1 386 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 KLHL34Q8N239 644 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 CDKL5O76039 1030 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 TMCO5BA8MYB1 307 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 ATP2B2Q01814 1243 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 FAM114A1Q8IWE2 563 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 DNAJC2Q99543 621 aaKnown RBP16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 GNL3LQ9NVN8 582 aaKnown RBP16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 POTEB2H3BUK9 544 aa16.22■□□□□ 0.19
CSPG4P12-202ENST00000559989 TTC39AQ5SRH9 613 aa16.21■□□□□ 0.19
CSPG4P12-202ENST00000559989 CEP131Q9UPN4 1083 aa16.21■□□□□ 0.19
CSPG4P12-202ENST00000559989 CCDC160A6NGH7 325 aa16.21■□□□□ 0.18
CSPG4P12-202ENST00000559989 GRPEL1Q9HAV7 217 aa16.21■□□□□ 0.18
CSPG4P12-202ENST00000559989 TSPYL4Q9UJ04 414 aa16.21■□□□□ 0.18
CSPG4P12-202ENST00000559989 KIF6Q6ZMV9 814 aa16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 SSX2IPQ9Y2D8 614 aa16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 RIPK4P57078 832 aa16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 UPF3BQ9BZI7 483 aaKnown RBP16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 NAA15Q9BXJ9 866 aaKnown RBP16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 GTF2A1P52655 376 aaPredicted RBP16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 FILIP1Q7Z7B0 1213 aa16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 CCDC83Q8IWF9 413 aa16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 FSD2A1L4K1 749 aa16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 RAB3IL1Q8TBN0 382 aa16.2■□□□□ 0.18
CSPG4P12-202ENST00000559989 DDX12PQ92771 950 aa16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 NEK4P51957 841 aa16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 PANK3Q9H999 370 aa16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 FGFR1OPO95684 399 aaKnown RBP16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 CYP46A1Q9Y6A2 500 aa16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 WRNQ14191 1432 aaPredicted RBP eCLIP16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 PTPN14Q15678 1187 aa16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 CTNNBL1Q8WYA6 563 aaPredicted RBP16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 TSG101Q99816 390 aa16.19■□□□□ 0.18
CSPG4P12-202ENST00000559989 KIF18AQ8NI77 898 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 DIAPH1O60610 1272 aaKnown RBP16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 FERMT1Q9BQL6 677 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 ZNF76P36508 570 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 FKBP15Q5T1M5 1219 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 CTR9Q6PD62 1173 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 BBXQ8WY36 941 aaPredicted RBP16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 NACAP1Q9BZK3 213 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 KIF3CO14782 793 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 GNAI1P63096 354 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 FMN1Q68DA7 1419 aa16.18■□□□□ 0.18
CSPG4P12-202ENST00000559989 PAFAH1B1P43034 410 aa16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 CCDC158Q5M9N0 1113 aa16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 PDIA4P13667 645 aaKnown RBP16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 DNAAF4Q8WXU2 420 aa16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 SPECC1Q5M775 1068 aa16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 PPP4R3AQ6IN85 833 aa16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 NUTM2FA1L443 756 aa16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 CTNNA2P26232 953 aa16.17■□□□□ 0.18
CSPG4P12-202ENST00000559989 CBX1P83916 185 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 TNIP1Q15025 636 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 CCDC6Q16204 474 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 FBF1Q8TES7 1133 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 NUP62CLQ9H1M0 184 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 FERMT2Q96AC1 680 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 RAI14Q9P0K7 980 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 USO1O60763 962 aaKnown RBP16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 WASF1Q92558 559 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 GTPBP4Q9BZE4 634 aaKnown RBP16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 SSBP05455 408 aaKnown RBP eCLIP16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 HSPA4P34932 840 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 MNAT1P51948 309 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 RUNDC1Q96C34 613 aa16.16■□□□□ 0.18
CSPG4P12-202ENST00000559989 PPP1R14CQ8TAE6 165 aa16.15■□□□□ 0.18
CSPG4P12-202ENST00000559989 ANAPC4Q9UJX5 808 aa16.15■□□□□ 0.18
CSPG4P12-202ENST00000559989 SPATA32Q96LK8 384 aa16.15■□□□□ 0.18
CSPG4P12-202ENST00000559989 CFAP100Q494V2 611 aa16.15■□□□□ 0.18
CSPG4P12-202ENST00000559989 SETSIPP0DME0 302 aa16.15■□□□□ 0.18
CSPG4P12-202ENST00000559989 CACNA2D4Q7Z3S7 1137 aa16.15■□□□□ 0.18
CSPG4P12-202ENST00000559989 BRPF3Q9ULD4 1205 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms