RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 CABLES1Q8TDN4 633 aa16.22■□□□□ 0.19
HERC1-205ENST00000559886 U2SURPO15042 1029 aaKnown RBP16.21■□□□□ 0.19
HERC1-205ENST00000559886 EIF4A2Q14240 407 aaKnown RBP16.21■□□□□ 0.19
HERC1-205ENST00000559886 IP6K1Q92551 441 aa16.21■□□□□ 0.19
HERC1-205ENST00000559886 RGPD1P0DJD0 1748 aa16.21■□□□□ 0.18
HERC1-205ENST00000559886 COL22A1Q8NFW1 1626 aaPredicted RBP16.2■□□□□ 0.18
HERC1-205ENST00000559886 COL18A1P39060 1754 aa16.19■□□□□ 0.18
HERC1-205ENST00000559886 RGPD5Q99666 1765 aa16.19■□□□□ 0.18
HERC1-205ENST00000559886 CPDO75976 1380 aa16.18■□□□□ 0.18
HERC1-205ENST00000559886 ZC3H6P61129 1189 aaKnown RBP16.18■□□□□ 0.18
HERC1-205ENST00000559886 CCDC146Q8IYE0 955 aa16.18■□□□□ 0.18
HERC1-205ENST00000559886 ZBED9Q6R2W3 1325 aa16.18■□□□□ 0.18
HERC1-205ENST00000559886 ABCC6O95255 1503 aa16.17■□□□□ 0.18
HERC1-205ENST00000559886 ZBTB7CA1YPR0 619 aa16.17■□□□□ 0.18
HERC1-205ENST00000559886 FCHSD2O94868 740 aa16.17■□□□□ 0.18
HERC1-205ENST00000559886 RUNDC1Q96C34 613 aa16.17■□□□□ 0.18
HERC1-205ENST00000559886 PLEKHF1Q96S99 279 aa16.16■□□□□ 0.18
HERC1-205ENST00000559886 KIAA0232Q92628 1395 aa16.15■□□□□ 0.18
HERC1-205ENST00000559886 CENPBP07199 599 aaPredicted RBP16.15■□□□□ 0.18
HERC1-205ENST00000559886 RSPH6AQ9H0K4 717 aa16.15■□□□□ 0.18
HERC1-205ENST00000559886 PNNQ9H307 717 aaKnown RBP16.15■□□□□ 0.18
HERC1-205ENST00000559886 SENP3-EIF4A1A0A087X0R7 540 aa16.14■□□□□ 0.17
HERC1-205ENST00000559886 AXIN2Q9Y2T1 843 aa16.14■□□□□ 0.17
HERC1-205ENST00000559886 APAF1O14727 1248 aa16.13■□□□□ 0.17
HERC1-205ENST00000559886 HMOX1P09601 288 aa16.13■□□□□ 0.17
HERC1-205ENST00000559886 HAP1P54257 671 aaPredicted RBP16.13■□□□□ 0.17
HERC1-205ENST00000559886 RGPD2P0DJD1 1756 aa16.13■□□□□ 0.17
HERC1-205ENST00000559886 IGSF1Q8N6C5 1336 aa16.13■□□□□ 0.17
HERC1-205ENST00000559886 EYA1Q99502 592 aa16.13■□□□□ 0.17
HERC1-205ENST00000559886 LTV1Q96GA3 475 aaPredicted RBP16.12■□□□□ 0.17
HERC1-205ENST00000559886 KDRP35968 1356 aa16.12■□□□□ 0.17
HERC1-205ENST00000559886 LMO7Q8WWI1 1683 aa16.12■□□□□ 0.17
HERC1-205ENST00000559886 PRKAR2BP31323 418 aa16.11■□□□□ 0.17
HERC1-205ENST00000559886 SULT6B1Q6IMI4 303 aa16.11■□□□□ 0.17
HERC1-205ENST00000559886 TCP11L2Q8N4U5 519 aa16.11■□□□□ 0.17
HERC1-205ENST00000559886 NGEFQ8N5V2 710 aa16.11■□□□□ 0.17
HERC1-205ENST00000559886 CHRNA2Q15822 529 aa16.11■□□□□ 0.17
HERC1-205ENST00000559886 AEBP1Q8IUX7 1158 aa16.11■□□□□ 0.17
HERC1-205ENST00000559886 PRDM11Q9NQV5 511 aa16.11■□□□□ 0.17
HERC1-205ENST00000559886 ANKRD24Q8TF21 1146 aa16.1■□□□□ 0.17
HERC1-205ENST00000559886 MAPK8IP3Q9UPT6 1336 aa16.1■□□□□ 0.17
HERC1-205ENST00000559886 SALL2Q9Y467 1007 aaPredicted RBP16.1■□□□□ 0.17
HERC1-205ENST00000559886 CAMTA1Q9Y6Y1 1673 aa16.1■□□□□ 0.17
HERC1-205ENST00000559886 ERBB3P21860 1342 aa16.1■□□□□ 0.17
HERC1-205ENST00000559886 FAM208AQ9UK61 1670 aaKnown RBP16.09■□□□□ 0.17
HERC1-205ENST00000559886 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
HERC1-205ENST00000559886 NEFMP07197 916 aa16.08■□□□□ 0.16
HERC1-205ENST00000559886 NBPF6Q5VWK0 638 aa16.08■□□□□ 0.16
HERC1-205ENST00000559886 PHACTR3Q96KR7 559 aa16.08■□□□□ 0.16
HERC1-205ENST00000559886 NBPF4Q96M43 638 aa16.08■□□□□ 0.16
HERC1-205ENST00000559886 NCAPD2Q15021 1401 aa16.08■□□□□ 0.16
HERC1-205ENST00000559886 COL14A1Q05707 1796 aaKnown RBP16.07■□□□□ 0.16
HERC1-205ENST00000559886 FAM83GA6ND36 823 aa16.07■□□□□ 0.16
HERC1-205ENST00000559886 TMPOP42166 694 aaKnown RBP16.07■□□□□ 0.16
HERC1-205ENST00000559886 ZNF521Q96K83 1311 aa16.07■□□□□ 0.16
HERC1-205ENST00000559886 JCADQ9P266 1359 aa16.06■□□□□ 0.16
HERC1-205ENST00000559886 DLG5Q8TDM6 1919 aa16.06■□□□□ 0.16
HERC1-205ENST00000559886 PHF23Q9BUL5 403 aaPredicted RBP16.06■□□□□ 0.16
HERC1-205ENST00000559886 RRP7AQ9Y3A4 280 aaKnown RBP16.06■□□□□ 0.16
HERC1-205ENST00000559886 CCDC27Q2M243 656 aa16.05■□□□□ 0.16
HERC1-205ENST00000559886 NEUROD2Q15784 382 aa16.05■□□□□ 0.16
HERC1-205ENST00000559886 COL5A2P05997 1499 aaPredicted RBP16.04■□□□□ 0.16
HERC1-205ENST00000559886 PDE3BQ13370 1112 aa16.04■□□□□ 0.16
HERC1-205ENST00000559886 USHBP1Q8N6Y0 703 aa16.04■□□□□ 0.16
HERC1-205ENST00000559886 NFE2L2Q16236 605 aa16.04■□□□□ 0.16
HERC1-205ENST00000559886 WWC1Q8IX03 1113 aa16.04■□□□□ 0.16
HERC1-205ENST00000559886 HSPA1LP34931 641 aa16.03■□□□□ 0.16
HERC1-205ENST00000559886 WDR17Q8IZU2 1322 aa16.02■□□□□ 0.16
HERC1-205ENST00000559886 RIPK4P57078 832 aa16.02■□□□□ 0.16
HERC1-205ENST00000559886 CSB-PGBD3P0DP91 1061 aa16.02■□□□□ 0.15
HERC1-205ENST00000559886 NLRP2Q9NX02 1062 aa16.02■□□□□ 0.15
HERC1-205ENST00000559886 TRIM35Q9UPQ4 493 aa16.01■□□□□ 0.15
HERC1-205ENST00000559886 PLCH1Q4KWH8 1693 aa16.01■□□□□ 0.15
HERC1-205ENST00000559886 NUTM2BA6NNL0 878 aaPredicted RBP16.01■□□□□ 0.15
HERC1-205ENST00000559886 NUTM2EB1AL46 878 aaPredicted RBP16.01■□□□□ 0.15
HERC1-205ENST00000559886 NUTM2AQ8IVF1 878 aaPredicted RBP16.01■□□□□ 0.15
HERC1-205ENST00000559886 GOLGA2Q08379 1002 aa16■□□□□ 0.15
HERC1-205ENST00000559886 SPATA31A6Q5VVP1 1343 aa16■□□□□ 0.15
HERC1-205ENST00000559886 ADAMTS2O95450 1211 aa16■□□□□ 0.15
HERC1-205ENST00000559886 CDCA7LQ96GN5 454 aa16■□□□□ 0.15
HERC1-205ENST00000559886 BTG4Q9NY30 223 aa16■□□□□ 0.15
HERC1-205ENST00000559886 WDR63Q8IWG1 891 aa15.99■□□□□ 0.15
HERC1-205ENST00000559886 EVA1CP58658 441 aa15.99■□□□□ 0.15
HERC1-205ENST00000559886 MTHFSDQ2M296 383 aaKnown RBP15.99■□□□□ 0.15
HERC1-205ENST00000559886 NWD2Q9ULI1 1742 aa15.98■□□□□ 0.15
HERC1-205ENST00000559886 GAS2L2Q8NHY3 880 aa15.97■□□□□ 0.15
HERC1-205ENST00000559886 STRN4Q9NRL3 753 aa15.97■□□□□ 0.15
HERC1-205ENST00000559886 NRAPQ86VF7 1730 aa15.97■□□□□ 0.15
HERC1-205ENST00000559886 TOM1L2Q6ZVM7 507 aa15.97■□□□□ 0.15
HERC1-205ENST00000559886 SLFN5Q08AF3 891 aa15.96■□□□□ 0.15
HERC1-205ENST00000559886 LMOD3Q0VAK6 560 aa15.96■□□□□ 0.15
HERC1-205ENST00000559886 LARP1Q6PKG0 1096 aaKnown RBP15.96■□□□□ 0.15
HERC1-205ENST00000559886 CARD10Q9BWT7 1032 aa15.96■□□□□ 0.15
HERC1-205ENST00000559886 PLEKHG2Q9H7P9 1386 aa15.96■□□□□ 0.15
HERC1-205ENST00000559886 CRB1P82279 1406 aa15.96■□□□□ 0.15
HERC1-205ENST00000559886 TRMT2AQ8IZ69 625 aaKnown RBP15.95■□□□□ 0.14
HERC1-205ENST00000559886 SPINK5Q9NQ38 1064 aaPredicted RBP15.95■□□□□ 0.14
HERC1-205ENST00000559886 E9PSI1 815 aa15.95■□□□□ 0.14
HERC1-205ENST00000559886 AMOTQ4VCS5 1084 aa15.95■□□□□ 0.14
HERC1-205ENST00000559886 RAPGEF4Q8WZA2 1011 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms