RNA–Protein interactions for RNA: ENST00000558138.1

SPG11-207, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 750 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-207ENST00000558138 CAMTA1Q9Y6Y1 1673 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 NFAT5O94916 1531 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 C11orf95C9JLR9 678 aaPredicted RBP12.32□□□□□ -0.44
SPG11-207ENST00000558138 FYB1O15117 783 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 ZEB1P37275 1124 aaPredicted RBP12.32□□□□□ -0.44
SPG11-207ENST00000558138 SEPT12Q8IYM1 358 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 KNSTRNQ9Y448 316 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 COL5A2P05997 1499 aaPredicted RBP12.32□□□□□ -0.44
SPG11-207ENST00000558138 SPATA31A5Q5VU36 1347 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 SPATA31A7Q8IWB4 1347 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 LMO7Q8WWI1 1683 aa12.32□□□□□ -0.44
SPG11-207ENST00000558138 LTV1Q96GA3 475 aaPredicted RBP12.31□□□□□ -0.44
SPG11-207ENST00000558138 CARD14Q9BXL6 1004 aa12.31□□□□□ -0.44
SPG11-207ENST00000558138 SPATA31A1Q5TZJ5 1347 aa12.31□□□□□ -0.44
SPG11-207ENST00000558138 PPM1GO15355 546 aaPredicted RBP12.3□□□□□ -0.44
SPG11-207ENST00000558138 TNNT2P45379 298 aaPredicted RBP12.3□□□□□ -0.44
SPG11-207ENST00000558138 CNGB1Q14028 1251 aaPredicted RBP12.3□□□□□ -0.44
SPG11-207ENST00000558138 TCP11L2Q8N4U5 519 aa12.3□□□□□ -0.44
SPG11-207ENST00000558138 CRB1P82279 1406 aa12.29□□□□□ -0.44
SPG11-207ENST00000558138 RGPD5Q99666 1765 aa12.29□□□□□ -0.44
SPG11-207ENST00000558138 RRS1Q15050 365 aaKnown RBP12.29□□□□□ -0.44
SPG11-207ENST00000558138 NLRP2Q9NX02 1062 aa12.29□□□□□ -0.44
SPG11-207ENST00000558138 AXIN2Q9Y2T1 843 aa12.29□□□□□ -0.44
SPG11-207ENST00000558138 CCDC7Q96M83 1385 aa12.29□□□□□ -0.44
SPG11-207ENST00000558138 FBLN1P23142 703 aa12.28□□□□□ -0.44
SPG11-207ENST00000558138 KRT27Q7Z3Y8 459 aa12.28□□□□□ -0.44
SPG11-207ENST00000558138 ANKRD24Q8TF21 1146 aa12.28□□□□□ -0.44
SPG11-207ENST00000558138 WDR17Q8IZU2 1322 aa12.28□□□□□ -0.44
SPG11-207ENST00000558138 SMG6Q86US8 1419 aaKnown RBP12.28□□□□□ -0.44
SPG11-207ENST00000558138 ABCC6O95255 1503 aa12.27□□□□□ -0.44
SPG11-207ENST00000558138 PDE3BQ13370 1112 aa12.27□□□□□ -0.45
SPG11-207ENST00000558138 MORC1Q86VD1 984 aa12.27□□□□□ -0.45
SPG11-207ENST00000558138 THRAP3Q9Y2W1 955 aaKnown RBP12.27□□□□□ -0.45
SPG11-207ENST00000558138 MAP3K19Q56UN5 1328 aa12.27□□□□□ -0.45
SPG11-207ENST00000558138 COL18A1P39060 1754 aa12.26□□□□□ -0.45
SPG11-207ENST00000558138 HOXC9P31274 260 aa12.26□□□□□ -0.45
SPG11-207ENST00000558138 SF3B2Q13435 895 aaKnown RBP12.26□□□□□ -0.45
SPG11-207ENST00000558138 IP6K1Q92551 441 aa12.26□□□□□ -0.45
SPG11-207ENST00000558138 WASHC2AQ641Q2 1341 aa12.26□□□□□ -0.45
SPG11-207ENST00000558138 BLMP54132 1417 aaPredicted RBP12.26□□□□□ -0.45
SPG11-207ENST00000558138 BARGINQ6ZT62 677 aa12.25□□□□□ -0.45
SPG11-207ENST00000558138 ERBB3P21860 1342 aa12.25□□□□□ -0.45
SPG11-207ENST00000558138 RTL1A6NKG5 1358 aa12.25□□□□□ -0.45
SPG11-207ENST00000558138 NSD2O96028 1365 aa12.25□□□□□ -0.45
SPG11-207ENST00000558138 BRWD3Q6RI45 1802 aa12.25□□□□□ -0.45
SPG11-207ENST00000558138 CC2D1BQ5T0F9 858 aaKnown RBP12.24□□□□□ -0.45
SPG11-207ENST00000558138 CARD10Q9BWT7 1032 aa12.24□□□□□ -0.45
SPG11-207ENST00000558138 ANKRD26Q9UPS8 1709 aa12.24□□□□□ -0.45
SPG11-207ENST00000558138 FLT4P35916 1363 aa12.23□□□□□ -0.45
SPG11-207ENST00000558138 ONECUT3O60422 494 aaPredicted RBP12.23□□□□□ -0.45
SPG11-207ENST00000558138 DDB1Q16531 1140 aa12.23□□□□□ -0.45
SPG11-207ENST00000558138 UPF1Q92900 1129 aaKnown RBP eCLIP12.23□□□□□ -0.45
SPG11-207ENST00000558138 CDCA7Q9BWT1 371 aaPredicted RBP12.23□□□□□ -0.45
SPG11-207ENST00000558138 EMILIN1Q9Y6C2 1016 aa12.23□□□□□ -0.45
SPG11-207ENST00000558138 THSD7AQ9UPZ6 1657 aa12.22□□□□□ -0.45
SPG11-207ENST00000558138 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
SPG11-207ENST00000558138 FAM208AQ9UK61 1670 aaKnown RBP12.21□□□□□ -0.45
SPG11-207ENST00000558138 EXOC5O00471 708 aa12.2□□□□□ -0.46
SPG11-207ENST00000558138 IL2RBP14784 551 aa12.2□□□□□ -0.46
SPG11-207ENST00000558138 HSP90AB2PQ58FF8 381 aa12.2□□□□□ -0.46
SPG11-207ENST00000558138 MAP2P11137 1827 aaKnown RBP12.2□□□□□ -0.46
SPG11-207ENST00000558138 WNK3Q9BYP7 1800 aa12.2□□□□□ -0.46
SPG11-207ENST00000558138 KIF24Q5T7B8 1368 aa12.19□□□□□ -0.46
SPG11-207ENST00000558138 USHBP1Q8N6Y0 703 aa12.19□□□□□ -0.46
SPG11-207ENST00000558138 PARP4Q9UKK3 1724 aaKnown RBP12.19□□□□□ -0.46
SPG11-207ENST00000558138 LRRC37A3O60309 1634 aa12.19□□□□□ -0.46
SPG11-207ENST00000558138 INSRP06213 1382 aa12.18□□□□□ -0.46
SPG11-207ENST00000558138 PEAK1Q9H792 1746 aa12.18□□□□□ -0.46
SPG11-207ENST00000558138 FAM196AQ6ZSG2 479 aa12.18□□□□□ -0.46
SPG11-207ENST00000558138 RAPGEF4Q8WZA2 1011 aa12.18□□□□□ -0.46
SPG11-207ENST00000558138 POLKQ9UBT6 870 aa12.18□□□□□ -0.46
SPG11-207ENST00000558138 AMER1Q5JTC6 1135 aaPredicted RBP12.17□□□□□ -0.46
SPG11-207ENST00000558138 CCDC125Q86Z20 511 aa12.17□□□□□ -0.46
SPG11-207ENST00000558138 RGPD2P0DJD1 1756 aa12.16□□□□□ -0.46
SPG11-207ENST00000558138 TRIM37O94972 964 aa12.16□□□□□ -0.46
SPG11-207ENST00000558138 TATP17735 454 aaPredicted RBP12.16□□□□□ -0.46
SPG11-207ENST00000558138 NBPF6Q5VWK0 638 aa12.16□□□□□ -0.46
SPG11-207ENST00000558138 NBPF4Q96M43 638 aa12.16□□□□□ -0.46
SPG11-207ENST00000558138 OVOS2A0A0G2JMS6 1433 aa12.16□□□□□ -0.46
SPG11-207ENST00000558138 TNS2Q63HR2 1409 aa12.15□□□□□ -0.46
SPG11-207ENST00000558138 BAG6P46379 1132 aa12.15□□□□□ -0.46
SPG11-207ENST00000558138 DISP2A7MBM2 1401 aa12.14□□□□□ -0.47
SPG11-207ENST00000558138 PER1O15534 1290 aaPredicted RBP12.14□□□□□ -0.47
SPG11-207ENST00000558138 DDX54Q8TDD1 881 aaKnown RBP12.14□□□□□ -0.47
SPG11-207ENST00000558138 RGPD1P0DJD0 1748 aa12.14□□□□□ -0.47
SPG11-207ENST00000558138 DDX10Q13206 875 aaKnown RBP12.13□□□□□ -0.47
SPG11-207ENST00000558138 EIF4A2Q14240 407 aaKnown RBP12.13□□□□□ -0.47
SPG11-207ENST00000558138 APBA3O96018 575 aa12.12□□□□□ -0.47
SPG11-207ENST00000558138 MTHFSP49914 203 aa12.12□□□□□ -0.47
SPG11-207ENST00000558138 DEFB132Q7Z7B7 95 aa12.12□□□□□ -0.47
SPG11-207ENST00000558138 MARCH10Q8NA82 808 aaPredicted RBP12.12□□□□□ -0.47
SPG11-207ENST00000558138 ZCRB1Q8TBF4 217 aaKnown RBP12.12□□□□□ -0.47
SPG11-207ENST00000558138 NPC1L1Q9UHC9 1359 aa12.11□□□□□ -0.47
SPG11-207ENST00000558138 ACSBG1Q96GR2 724 aa12.11□□□□□ -0.47
SPG11-207ENST00000558138 CFAP53Q96M91 514 aa12.11□□□□□ -0.47
SPG11-207ENST00000558138 EYA1Q99502 592 aa12.11□□□□□ -0.47
SPG11-207ENST00000558138 MEGF6O75095 1541 aa12.11□□□□□ -0.47
SPG11-207ENST00000558138 SYTL4Q96C24 671 aaPredicted RBP12.1□□□□□ -0.47
SPG11-207ENST00000558138 KAT6BQ8WYB5 2073 aa12.1□□□□□ -0.47
SPG11-207ENST00000558138 PCDH11XQ9BZA7 1347 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms