RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 SMG6Q86US8 1419 aaKnown RBP16.59■□□□□ 0.25
TPM1-209ENST00000558072 NRAPQ86VF7 1730 aa16.59■□□□□ 0.25
TPM1-209ENST00000558072 RGPD2P0DJD1 1756 aa16.59■□□□□ 0.25
TPM1-209ENST00000558072 COL14A1Q05707 1796 aaKnown RBP16.59■□□□□ 0.25
TPM1-209ENST00000558072 AMPHP49418 695 aa16.58■□□□□ 0.24
TPM1-209ENST00000558072 WDR43Q15061 677 aaKnown RBP eCLIP16.58■□□□□ 0.24
TPM1-209ENST00000558072 CCDC184Q52MB2 194 aa16.58■□□□□ 0.24
TPM1-209ENST00000558072 PNNQ9H307 717 aaKnown RBP16.58■□□□□ 0.24
TPM1-209ENST00000558072 CAMTA1Q9Y6Y1 1673 aa16.57■□□□□ 0.24
TPM1-209ENST00000558072 FLT4P35916 1363 aa16.57■□□□□ 0.24
TPM1-209ENST00000558072 SPATA31A6Q5VVP1 1343 aa16.57■□□□□ 0.24
TPM1-209ENST00000558072 FAM83GA6ND36 823 aa16.57■□□□□ 0.24
TPM1-209ENST00000558072 ARHGEF25Q86VW2 580 aa16.57■□□□□ 0.24
TPM1-209ENST00000558072 C8orf37Q96NL8 207 aa16.57■□□□□ 0.24
TPM1-209ENST00000558072 PRDM11Q9NQV5 511 aa16.57■□□□□ 0.24
TPM1-209ENST00000558072 COL3A1P02461 1466 aaPredicted RBP16.56■□□□□ 0.24
TPM1-209ENST00000558072 CDK12Q9NYV4 1490 aaPredicted RBP16.56■□□□□ 0.24
TPM1-209ENST00000558072 AXIN2Q9Y2T1 843 aa16.56■□□□□ 0.24
TPM1-209ENST00000558072 CPDO75976 1380 aa16.55■□□□□ 0.24
TPM1-209ENST00000558072 DIAPH1O60610 1272 aaKnown RBP16.55■□□□□ 0.24
TPM1-209ENST00000558072 MEX3CQ5U5Q3 659 aaKnown RBP16.55■□□□□ 0.24
TPM1-209ENST00000558072 LTV1Q96GA3 475 aaPredicted RBP16.55■□□□□ 0.24
TPM1-209ENST00000558072 HOXC9P31274 260 aa16.54■□□□□ 0.24
TPM1-209ENST00000558072 PNISRQ8TF01 805 aaKnown RBP16.54■□□□□ 0.24
TPM1-209ENST00000558072 IP6K1Q92551 441 aa16.54■□□□□ 0.24
TPM1-209ENST00000558072 ABCC6O95255 1503 aa16.54■□□□□ 0.24
TPM1-209ENST00000558072 HSP90AB2PQ58FF8 381 aa16.53■□□□□ 0.24
TPM1-209ENST00000558072 COL5A2P05997 1499 aaPredicted RBP16.52■□□□□ 0.23
TPM1-209ENST00000558072 BLMP54132 1417 aaPredicted RBP16.52■□□□□ 0.23
TPM1-209ENST00000558072 SLIT2O94813 1529 aa16.51■□□□□ 0.23
TPM1-209ENST00000558072 NEFMP07197 916 aa16.51■□□□□ 0.23
TPM1-209ENST00000558072 STRN4Q9NRL3 753 aa16.51■□□□□ 0.23
TPM1-209ENST00000558072 BTG4Q9NY30 223 aa16.51■□□□□ 0.23
TPM1-209ENST00000558072 NWD2Q9ULI1 1742 aa16.5■□□□□ 0.23
TPM1-209ENST00000558072 AFF2P51816 1311 aa16.49■□□□□ 0.23
TPM1-209ENST00000558072 FAM9BQ8IZU0 186 aa16.49■□□□□ 0.23
TPM1-209ENST00000558072 USHBP1Q8N6Y0 703 aa16.49■□□□□ 0.23
TPM1-209ENST00000558072 BCL9LQ86UU0 1499 aa16.48■□□□□ 0.23
TPM1-209ENST00000558072 RGPD1P0DJD0 1748 aa16.48■□□□□ 0.23
TPM1-209ENST00000558072 EIF4A2Q14240 407 aaKnown RBP16.48■□□□□ 0.23
TPM1-209ENST00000558072 NGEFQ8N5V2 710 aa16.48■□□□□ 0.23
TPM1-209ENST00000558072 ANKRD24Q8TF21 1146 aa16.48■□□□□ 0.23
TPM1-209ENST00000558072 NGLY1Q96IV0 654 aa16.48■□□□□ 0.23
TPM1-209ENST00000558072 FAM208AQ9UK61 1670 aaKnown RBP16.48■□□□□ 0.23
TPM1-209ENST00000558072 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.48■□□□□ 0.23
TPM1-209ENST00000558072 U2AF1L5P0DN76 240 aaPredicted RBP16.47■□□□□ 0.23
TPM1-209ENST00000558072 U2AF1Q01081 240 aaKnown RBP eCLIP16.47■□□□□ 0.23
TPM1-209ENST00000558072 U2SURPO15042 1029 aaKnown RBP16.46■□□□□ 0.23
TPM1-209ENST00000558072 FCHSD2O94868 740 aa16.46■□□□□ 0.23
TPM1-209ENST00000558072 IL13P35225 146 aa16.46■□□□□ 0.23
TPM1-209ENST00000558072 LARP1Q6PKG0 1096 aaKnown RBP16.46■□□□□ 0.23
TPM1-209ENST00000558072 ERBB3P21860 1342 aa16.45■□□□□ 0.22
TPM1-209ENST00000558072 WNK3Q9BYP7 1800 aa16.45■□□□□ 0.22
TPM1-209ENST00000558072 GLI3P10071 1580 aa16.44■□□□□ 0.22
TPM1-209ENST00000558072 CSB-PGBD3P0DP91 1061 aa16.44■□□□□ 0.22
TPM1-209ENST00000558072 ADAMTS8Q9UP79 889 aa16.44■□□□□ 0.22
TPM1-209ENST00000558072 USP35Q9P2H5 1018 aa16.43■□□□□ 0.22
TPM1-209ENST00000558072 USP21Q9UK80 565 aa16.43■□□□□ 0.22
TPM1-209ENST00000558072 SENP3-EIF4A1A0A087X0R7 540 aa16.42■□□□□ 0.22
TPM1-209ENST00000558072 NCBP3Q53F19 620 aaKnown RBP16.42■□□□□ 0.22
TPM1-209ENST00000558072 NBPF6Q5VWK0 638 aa16.42■□□□□ 0.22
TPM1-209ENST00000558072 AEBP1Q8IUX7 1158 aa16.42■□□□□ 0.22
TPM1-209ENST00000558072 NBPF4Q96M43 638 aa16.42■□□□□ 0.22
TPM1-209ENST00000558072 RGS17Q9UGC6 210 aaPredicted RBP16.42■□□□□ 0.22
TPM1-209ENST00000558072 EVA1CP58658 441 aa16.41■□□□□ 0.22
TPM1-209ENST00000558072 FNBP4Q8N3X1 1017 aaPredicted RBP16.41■□□□□ 0.22
TPM1-209ENST00000558072 RUNDC1Q96C34 613 aa16.41■□□□□ 0.22
TPM1-209ENST00000558072 EYA1Q99502 592 aa16.41■□□□□ 0.22
TPM1-209ENST00000558072 NLRP2Q9NX02 1062 aa16.41■□□□□ 0.22
TPM1-209ENST00000558072 WDR17Q8IZU2 1322 aa16.41■□□□□ 0.22
TPM1-209ENST00000558072 MAPK8IP3Q9UPT6 1336 aa16.41■□□□□ 0.22
TPM1-209ENST00000558072 PLEKHG2Q9H7P9 1386 aa16.4■□□□□ 0.22
TPM1-209ENST00000558072 ATRNO75882 1429 aa16.4■□□□□ 0.22
TPM1-209ENST00000558072 HMOX1P09601 288 aa16.4■□□□□ 0.22
TPM1-209ENST00000558072 TOM1L2Q6ZVM7 507 aa16.4■□□□□ 0.22
TPM1-209ENST00000558072 UNC5CLQ8IV45 518 aa16.4■□□□□ 0.22
TPM1-209ENST00000558072 CCDC9Q9Y3X0 531 aaKnown RBP16.4■□□□□ 0.22
TPM1-209ENST00000558072 IGSF1Q8N6C5 1336 aa16.4■□□□□ 0.22
TPM1-209ENST00000558072 MEGF6O75095 1541 aa16.4■□□□□ 0.22
TPM1-209ENST00000558072 CRB1P82279 1406 aa16.39■□□□□ 0.21
TPM1-209ENST00000558072 SULT6B1Q6IMI4 303 aa16.37■□□□□ 0.21
TPM1-209ENST00000558072 PHF23Q9BUL5 403 aaPredicted RBP16.37■□□□□ 0.21
TPM1-209ENST00000558072 SHANK3Q9BYB0 1731 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 POTEAQ6S8J7 498 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 LRRC37A3O60309 1634 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 SPATA31A1Q5TZJ5 1347 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 SPATA31A5Q5VU36 1347 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 SPATA31A7Q8IWB4 1347 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 KDRP35968 1356 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 NCAPD2Q15021 1401 aa16.36■□□□□ 0.21
TPM1-209ENST00000558072 HNRNPUQ00839 825 aaKnown RBP eCLIP16.35■□□□□ 0.21
TPM1-209ENST00000558072 CCDC146Q8IYE0 955 aa16.35■□□□□ 0.21
TPM1-209ENST00000558072 RSPH6AQ9H0K4 717 aa16.35■□□□□ 0.21
TPM1-209ENST00000558072 THSD7AQ9UPZ6 1657 aa16.34■□□□□ 0.21
TPM1-209ENST00000558072 PARP4Q9UKK3 1724 aaKnown RBP16.34■□□□□ 0.21
TPM1-209ENST00000558072 PRKAR2BP31323 418 aa16.34■□□□□ 0.21
TPM1-209ENST00000558072 LMOD3Q0VAK6 560 aa16.34■□□□□ 0.21
TPM1-209ENST00000558072 VPS72Q15906 364 aa16.34■□□□□ 0.21
TPM1-209ENST00000558072 AMOTQ4VCS5 1084 aa16.34■□□□□ 0.21
TPM1-209ENST00000558072 CARD10Q9BWT7 1032 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms