RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 GDF11O95390 407 aa12.14□□□□□ -0.47
VRK1-205ENST00000555402 RASSF7Q02833 373 aa12.14□□□□□ -0.47
VRK1-205ENST00000555402 FIGNL2A6NMB9 653 aa12.13□□□□□ -0.47
VRK1-205ENST00000555402 MYSM1Q5VVJ2 828 aa12.13□□□□□ -0.47
VRK1-205ENST00000555402 NANOS1Q8WY41 292 aaKnown RBP12.12□□□□□ -0.47
VRK1-205ENST00000555402 COL25A1Q9BXS0 654 aaPredicted RBP12.12□□□□□ -0.47
VRK1-205ENST00000555402 AK7Q96M32 723 aa12.11□□□□□ -0.47
VRK1-205ENST00000555402 CBLBQ13191 982 aa12.1□□□□□ -0.47
VRK1-205ENST00000555402 RTL5Q5HYW3 569 aaPredicted RBP12.1□□□□□ -0.47
VRK1-205ENST00000555402 PPP1R26Q5T8A7 1209 aaPredicted RBP12.1□□□□□ -0.47
VRK1-205ENST00000555402 Q6ZVU0 165 aa12.1□□□□□ -0.47
VRK1-205ENST00000555402 CCDC155Q8N6L0 562 aa12.1□□□□□ -0.47
VRK1-205ENST00000555402 HELBQ8NG08 1087 aaPredicted RBP12.1□□□□□ -0.47
VRK1-205ENST00000555402 CARD14Q9BXL6 1004 aa12.1□□□□□ -0.47
VRK1-205ENST00000555402 RNF225M0QZC1 329 aaPredicted RBP12.09□□□□□ -0.47
VRK1-205ENST00000555402 ERFEQ4G0M1 354 aa12.09□□□□□ -0.47
VRK1-205ENST00000555402 GPKOWQ92917 476 aaPredicted RBP eCLIP12.09□□□□□ -0.47
VRK1-205ENST00000555402 PGPEP1Q9NXJ5 209 aa12.09□□□□□ -0.47
VRK1-205ENST00000555402 SPINT1O43278 529 aa12.08□□□□□ -0.48
VRK1-205ENST00000555402 ZNF385CQ66K41 422 aaPredicted RBP12.08□□□□□ -0.48
VRK1-205ENST00000555402 RNFT1Q5M7Z0 435 aa12.07□□□□□ -0.48
VRK1-205ENST00000555402 SLC35F4A4IF30 521 aa12.06□□□□□ -0.48
VRK1-205ENST00000555402 SVOPQ8N4V2 548 aa12.04□□□□□ -0.48
VRK1-205ENST00000555402 SLURP2P0DP57 97 aa12.02□□□□□ -0.49
VRK1-205ENST00000555402 VWA5B2Q8N398 1253 aa12.02□□□□□ -0.49
VRK1-205ENST00000555402 WHAMMQ8TF30 809 aa12.02□□□□□ -0.49
VRK1-205ENST00000555402 KCTD15Q96SI1 283 aaPredicted RBP12.02□□□□□ -0.49
VRK1-205ENST00000555402 ITGA6P23229 1130 aa12.01□□□□□ -0.49
VRK1-205ENST00000555402 PDE4DQ08499 809 aa12.01□□□□□ -0.49
VRK1-205ENST00000555402 PDXDC2PQ6P474 469 aa12.01□□□□□ -0.49
VRK1-205ENST00000555402 ARHGEF15O94989 841 aa12□□□□□ -0.49
VRK1-205ENST00000555402 CTSOP43234 321 aaPredicted RBP12□□□□□ -0.49
VRK1-205ENST00000555402 CLK2P49760 499 aaKnown RBP12□□□□□ -0.49
VRK1-205ENST00000555402 CTDSPL2Q05D32 466 aa12□□□□□ -0.49
VRK1-205ENST00000555402 DHX9Q08211 1270 aaKnown RBP12□□□□□ -0.49
VRK1-205ENST00000555402 SV2AQ7L0J3 742 aa12□□□□□ -0.49
VRK1-205ENST00000555402 ARHGAP9Q9BRR9 750 aa12□□□□□ -0.49
VRK1-205ENST00000555402 CDV3Q9UKY7 258 aaKnown RBP12□□□□□ -0.49
VRK1-205ENST00000555402 AGBL1Q96MI9 1066 aa11.99□□□□□ -0.49
VRK1-205ENST00000555402 CDC14CA4D256 554 aa11.98□□□□□ -0.49
VRK1-205ENST00000555402 IRS1P35568 1242 aa11.97□□□□□ -0.49
VRK1-205ENST00000555402 SLC10A4Q96EP9 437 aa11.97□□□□□ -0.49
VRK1-205ENST00000555402 INSM2Q96T92 566 aaPredicted RBP11.97□□□□□ -0.49
VRK1-205ENST00000555402 RELBQ01201 579 aa11.96□□□□□ -0.49
VRK1-205ENST00000555402 ZBTB33Q86T24 672 aa11.96□□□□□ -0.49
VRK1-205ENST00000555402 POLR3EQ9NVU0 708 aa11.96□□□□□ -0.49
VRK1-205ENST00000555402 RSPH6AQ9H0K4 717 aa11.95□□□□□ -0.5
VRK1-205ENST00000555402 FKBPLQ9UIM3 349 aa11.95□□□□□ -0.5
VRK1-205ENST00000555402 MARSP56192 900 aaKnown RBP11.94□□□□□ -0.5
VRK1-205ENST00000555402 INTS6LQ5JSJ4 861 aaKnown RBP11.94□□□□□ -0.5
VRK1-205ENST00000555402 POLMQ9NP87 494 aaPredicted RBP11.94□□□□□ -0.5
VRK1-205ENST00000555402 DNMT3AQ9Y6K1 912 aaPredicted RBP11.94□□□□□ -0.5
VRK1-205ENST00000555402 GPAT2Q6NUI2 795 aa11.93□□□□□ -0.5
VRK1-205ENST00000555402 RNF217Q8TC41 542 aa11.93□□□□□ -0.5
VRK1-205ENST00000555402 LRRN4Q8WUT4 740 aa11.93□□□□□ -0.5
VRK1-205ENST00000555402 PRKCSHP14314 528 aaPredicted RBP11.92□□□□□ -0.5
VRK1-205ENST00000555402 ZNF395Q9H8N7 513 aaPredicted RBP11.92□□□□□ -0.5
VRK1-205ENST00000555402 SENP3-EIF4A1A0A087X0R7 540 aa11.91□□□□□ -0.5
VRK1-205ENST00000555402 IGHA1P01876 353 aa11.91□□□□□ -0.5
VRK1-205ENST00000555402 KANK3Q6NY19 840 aa11.91□□□□□ -0.5
VRK1-205ENST00000555402 NR6A1Q15406 480 aa11.9□□□□□ -0.5
VRK1-205ENST00000555402 OCSTAMPQ9BR26 566 aa11.9□□□□□ -0.5
VRK1-205ENST00000555402 ZC3H4Q9UPT8 1303 aaKnown RBP11.89□□□□□ -0.51
VRK1-205ENST00000555402 ADAMTS2O95450 1211 aa11.89□□□□□ -0.51
VRK1-205ENST00000555402 PTK2Q05397 1052 aa11.89□□□□□ -0.51
VRK1-205ENST00000555402 LYPD4Q6UWN0 246 aa11.89□□□□□ -0.51
VRK1-205ENST00000555402 SCARF2Q96GP6 870 aaPredicted RBP11.89□□□□□ -0.51
VRK1-205ENST00000555402 TMPRSS4Q9NRS4 437 aa11.89□□□□□ -0.51
VRK1-205ENST00000555402 FOXK2Q01167 660 aa11.86□□□□□ -0.51
VRK1-205ENST00000555402 SRSF11Q05519 484 aaKnown RBP11.86□□□□□ -0.51
VRK1-205ENST00000555402 ADAM32Q8TC27 787 aa11.86□□□□□ -0.51
VRK1-205ENST00000555402 SLC24A3Q9HC58 644 aa11.86□□□□□ -0.51
VRK1-205ENST00000555402 GPSM3Q9Y4H4 160 aa11.86□□□□□ -0.51
VRK1-205ENST00000555402 FOXD4L5Q5VV16 416 aaPredicted RBP11.85□□□□□ -0.51
VRK1-205ENST00000555402 ZNF784Q8NCA9 323 aaPredicted RBP11.85□□□□□ -0.51
VRK1-205ENST00000555402 ADH1AP07327 375 aa11.84□□□□□ -0.51
VRK1-205ENST00000555402 ADD1P35611 737 aaKnown RBP11.84□□□□□ -0.51
VRK1-205ENST00000555402 NBPF20Q3BBV1 942 aa11.84□□□□□ -0.51
VRK1-205ENST00000555402 TPRNQ4KMQ1 711 aa11.84□□□□□ -0.51
VRK1-205ENST00000555402 CELA2BP08218 269 aaPredicted RBP11.83□□□□□ -0.52
VRK1-205ENST00000555402 PTGIRP43119 386 aa11.83□□□□□ -0.52
VRK1-205ENST00000555402 MAP3K10Q02779 954 aa11.83□□□□□ -0.52
VRK1-205ENST00000555402 FBXO31Q5XUX0 539 aaPredicted RBP11.83□□□□□ -0.52
VRK1-205ENST00000555402 KDF1Q8NAX2 398 aaPredicted RBP11.83□□□□□ -0.52
VRK1-205ENST00000555402 CUEDC1Q9NWM3 386 aaPredicted RBP11.83□□□□□ -0.52
VRK1-205ENST00000555402 LILRA1O75019 489 aa11.82□□□□□ -0.52
VRK1-205ENST00000555402 RAB15P59190 212 aa11.82□□□□□ -0.52
VRK1-205ENST00000555402 GAS6Q14393 721 aa11.82□□□□□ -0.52
VRK1-205ENST00000555402 LYSMD3Q7Z3D4 306 aa11.82□□□□□ -0.52
VRK1-205ENST00000555402 ERVH48-1M5A8F1 160 aa11.8□□□□□ -0.52
VRK1-205ENST00000555402 SKIV2LQ15477 1246 aaKnown RBP11.8□□□□□ -0.52
VRK1-205ENST00000555402 ENAMQ9NRM1 1142 aa11.79□□□□□ -0.52
VRK1-205ENST00000555402 DZIP3Q86Y13 1208 aaKnown RBP11.78□□□□□ -0.52
VRK1-205ENST00000555402 PPP2R2DQ66LE6 453 aa11.77□□□□□ -0.53
VRK1-205ENST00000555402 PRICKLE2Q7Z3G6 844 aa11.77□□□□□ -0.53
VRK1-205ENST00000555402 EPS8L1Q8TE68 723 aa11.77□□□□□ -0.53
VRK1-205ENST00000555402 PROCA1Q8NCQ7 364 aaPredicted RBP11.76□□□□□ -0.53
VRK1-205ENST00000555402 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.76□□□□□ -0.53
VRK1-205ENST00000555402 ESPNB1AK53 854 aa11.75□□□□□ -0.53
VRK1-205ENST00000555402 AP1G2O75843 785 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms