RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 RRS1Q15050 365 aaKnown RBP23.27■■□□□ 1.32
SHOX-204ENST00000554971 MEX3CQ5U5Q3 659 aaKnown RBP23.27■■□□□ 1.32
SHOX-204ENST00000554971 NRAPQ86VF7 1730 aa23.26■■□□□ 1.31
SHOX-204ENST00000554971 CAMTA1Q9Y6Y1 1673 aa23.26■■□□□ 1.31
SHOX-204ENST00000554971 TNNT2P45379 298 aaPredicted RBP23.26■■□□□ 1.31
SHOX-204ENST00000554971 MAP3K19Q56UN5 1328 aa23.26■■□□□ 1.31
SHOX-204ENST00000554971 CCDC184Q52MB2 194 aa23.25■■□□□ 1.31
SHOX-204ENST00000554971 MORC1Q86VD1 984 aa23.25■■□□□ 1.31
SHOX-204ENST00000554971 AXIN2Q9Y2T1 843 aa23.25■■□□□ 1.31
SHOX-204ENST00000554971 AATKQ6ZMQ8 1374 aa23.25■■□□□ 1.31
SHOX-204ENST00000554971 BCL9LQ86UU0 1499 aa23.24■■□□□ 1.31
SHOX-204ENST00000554971 FNBP4Q8N3X1 1017 aaPredicted RBP23.24■■□□□ 1.31
SHOX-204ENST00000554971 NGLY1Q96IV0 654 aa23.24■■□□□ 1.31
SHOX-204ENST00000554971 ZBTB7CA1YPR0 619 aa23.23■■□□□ 1.31
SHOX-204ENST00000554971 AFF2P51816 1311 aa23.22■■□□□ 1.31
SHOX-204ENST00000554971 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.22■■□□□ 1.31
SHOX-204ENST00000554971 RGS17Q9UGC6 210 aaPredicted RBP23.22■■□□□ 1.31
SHOX-204ENST00000554971 EMILIN1Q9Y6C2 1016 aa23.22■■□□□ 1.31
SHOX-204ENST00000554971 TSHZ2Q9NRE2 1034 aa23.21■■□□□ 1.31
SHOX-204ENST00000554971 BTG4Q9NY30 223 aa23.21■■□□□ 1.31
SHOX-204ENST00000554971 ABCC6O95255 1503 aa23.21■■□□□ 1.31
SHOX-204ENST00000554971 POLKQ9UBT6 870 aa23.21■■□□□ 1.31
SHOX-204ENST00000554971 PARD3Q8TEW0 1356 aa23.2■■□□□ 1.3
SHOX-204ENST00000554971 MYT1Q01538 1121 aa23.2■■□□□ 1.3
SHOX-204ENST00000554971 FAM9BQ8IZU0 186 aa23.2■■□□□ 1.3
SHOX-204ENST00000554971 SMG6Q86US8 1419 aaKnown RBP23.19■■□□□ 1.3
SHOX-204ENST00000554971 COL5A2P05997 1499 aaPredicted RBP23.19■■□□□ 1.3
SHOX-204ENST00000554971 EP400Q96L91 3159 aa23.19■■□□□ 1.3
SHOX-204ENST00000554971 HOXC9P31274 260 aa23.17■■□□□ 1.3
SHOX-204ENST00000554971 RALBP1Q15311 655 aa23.17■■□□□ 1.3
SHOX-204ENST00000554971 IP6K1Q92551 441 aa23.16■■□□□ 1.3
SHOX-204ENST00000554971 USP21Q9UK80 565 aa23.16■■□□□ 1.3
SHOX-204ENST00000554971 UNC5CLQ8IV45 518 aa23.16■■□□□ 1.3
SHOX-204ENST00000554971 RTL1A6NKG5 1358 aa23.15■■□□□ 1.3
SHOX-204ENST00000554971 RGPD2P0DJD1 1756 aa23.15■■□□□ 1.3
SHOX-204ENST00000554971 HSP90AB2PQ58FF8 381 aa23.14■■□□□ 1.3
SHOX-204ENST00000554971 FLT4P35916 1363 aa23.14■■□□□ 1.3
SHOX-204ENST00000554971 KIF24Q5T7B8 1368 aa23.14■■□□□ 1.3
SHOX-204ENST00000554971 BLMP54132 1417 aaPredicted RBP23.14■■□□□ 1.29
SHOX-204ENST00000554971 AMPHP49418 695 aa23.14■■□□□ 1.29
SHOX-204ENST00000554971 PPM1GO15355 546 aaPredicted RBP23.13■■□□□ 1.29
SHOX-204ENST00000554971 ERBB3P21860 1342 aa23.12■■□□□ 1.29
SHOX-204ENST00000554971 ATRNO75882 1429 aa23.12■■□□□ 1.29
SHOX-204ENST00000554971 CDK12Q9NYV4 1490 aaPredicted RBP23.11■■□□□ 1.29
SHOX-204ENST00000554971 PPP2R1AP30153 589 aa23.11■■□□□ 1.29
SHOX-204ENST00000554971 MTHFSP49914 203 aa23.11■■□□□ 1.29
SHOX-204ENST00000554971 PHF23Q9BUL5 403 aaPredicted RBP23.11■■□□□ 1.29
SHOX-204ENST00000554971 STRN4Q9NRL3 753 aa23.11■■□□□ 1.29
SHOX-204ENST00000554971 INSRP06213 1382 aa23.11■■□□□ 1.29
SHOX-204ENST00000554971 LARP1Q6PKG0 1096 aaKnown RBP23.1■■□□□ 1.29
SHOX-204ENST00000554971 POTEAQ6S8J7 498 aa23.1■■□□□ 1.29
SHOX-204ENST00000554971 ZNF772Q68DY9 489 aaPredicted RBP23.09■■□□□ 1.29
SHOX-204ENST00000554971 GLI3P10071 1580 aa23.09■■□□□ 1.29
SHOX-204ENST00000554971 WDR17Q8IZU2 1322 aa23.08■■□□□ 1.29
SHOX-204ENST00000554971 MYBBP1AQ9BQG0 1328 aaKnown RBP23.08■■□□□ 1.28
SHOX-204ENST00000554971 PNISRQ8TF01 805 aaKnown RBP23.08■■□□□ 1.28
SHOX-204ENST00000554971 ANKRD24Q8TF21 1146 aa23.08■■□□□ 1.28
SHOX-204ENST00000554971 QTRT2Q9H974 415 aaKnown RBP23.08■■□□□ 1.28
SHOX-204ENST00000554971 FAM208AQ9UK61 1670 aaKnown RBP23.08■■□□□ 1.28
SHOX-204ENST00000554971 VPS72Q15906 364 aa23.07■■□□□ 1.28
SHOX-204ENST00000554971 COL3A1P02461 1466 aaPredicted RBP23.07■■□□□ 1.28
SHOX-204ENST00000554971 LTV1Q96GA3 475 aaPredicted RBP23.06■■□□□ 1.28
SHOX-204ENST00000554971 EVA1CP58658 441 aa23.06■■□□□ 1.28
SHOX-204ENST00000554971 TRPC5Q9UL62 973 aaPredicted RBP23.06■■□□□ 1.28
SHOX-204ENST00000554971 CRB1P82279 1406 aa23.05■■□□□ 1.28
SHOX-204ENST00000554971 SPATA31A5Q5VU36 1347 aa23.05■■□□□ 1.28
SHOX-204ENST00000554971 SPATA31A7Q8IWB4 1347 aa23.05■■□□□ 1.28
SHOX-204ENST00000554971 PPP4R2Q9NY27 417 aa23.04■■□□□ 1.28
SHOX-204ENST00000554971 SPATA31A1Q5TZJ5 1347 aa23.03■■□□□ 1.28
SHOX-204ENST00000554971 EIF4A2Q14240 407 aaKnown RBP23.03■■□□□ 1.28
SHOX-204ENST00000554971 GJD4Q96KN9 370 aaPredicted RBP23.03■■□□□ 1.28
SHOX-204ENST00000554971 RGPD1P0DJD0 1748 aa23.02■■□□□ 1.28
SHOX-204ENST00000554971 WNK3Q9BYP7 1800 aa23.02■■□□□ 1.28
SHOX-204ENST00000554971 TOM1L2Q6ZVM7 507 aa23.02■■□□□ 1.28
SHOX-204ENST00000554971 USP35Q9P2H5 1018 aa23.02■■□□□ 1.28
SHOX-204ENST00000554971 CSB-PGBD3P0DP91 1061 aa23.01■■□□□ 1.27
SHOX-204ENST00000554971 NBPF6Q5VWK0 638 aa23■■□□□ 1.27
SHOX-204ENST00000554971 NBPF4Q96M43 638 aa23■■□□□ 1.27
SHOX-204ENST00000554971 CCDC9Q9Y3X0 531 aaKnown RBP23■■□□□ 1.27
SHOX-204ENST00000554971 CARD10Q9BWT7 1032 aa22.99■■□□□ 1.27
SHOX-204ENST00000554971 IL13P35225 146 aa22.98■■□□□ 1.27
SHOX-204ENST00000554971 NLRP2Q9NX02 1062 aa22.98■■□□□ 1.27
SHOX-204ENST00000554971 NUDCQ9Y266 331 aa22.98■■□□□ 1.27
SHOX-204ENST00000554971 NCAPD2Q15021 1401 aa22.98■■□□□ 1.27
SHOX-204ENST00000554971 RBM6P78332 1123 aaKnown RBP22.97■■□□□ 1.27
SHOX-204ENST00000554971 EYA1Q99502 592 aa22.97■■□□□ 1.27
SHOX-204ENST00000554971 THSD7AQ9UPZ6 1657 aa22.96■■□□□ 1.27
SHOX-204ENST00000554971 USHBP1Q8N6Y0 703 aa22.96■■□□□ 1.27
SHOX-204ENST00000554971 FAM98CQ17RN3 349 aaKnown RBP22.95■■□□□ 1.26
SHOX-204ENST00000554971 TCP11L2Q8N4U5 519 aa22.95■■□□□ 1.26
SHOX-204ENST00000554971 RXRBP28702 533 aa22.94■■□□□ 1.26
SHOX-204ENST00000554971 BRWD3Q6RI45 1802 aa22.94■■□□□ 1.26
SHOX-204ENST00000554971 DISP2A7MBM2 1401 aa22.94■■□□□ 1.26
SHOX-204ENST00000554971 RNF123Q5XPI4 1314 aa22.94■■□□□ 1.26
SHOX-204ENST00000554971 IGSF1Q8N6C5 1336 aa22.94■■□□□ 1.26
SHOX-204ENST00000554971 ONECUT3O60422 494 aaPredicted RBP22.93■■□□□ 1.26
SHOX-204ENST00000554971 DIAPH1O60610 1272 aaKnown RBP22.93■■□□□ 1.26
SHOX-204ENST00000554971 PARP4Q9UKK3 1724 aaKnown RBP22.93■■□□□ 1.26
SHOX-204ENST00000554971 BARGINQ6ZT62 677 aa22.92■■□□□ 1.26
SHOX-204ENST00000554971 THRAP3Q9Y2W1 955 aaKnown RBP22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 1165 ms