RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 ZNF608Q9ULD9 1512 aaPredicted RBP9.53□□□□□ -0.88
SCAF11-213ENST00000550629 UNC93B1Q9H1C4 597 aa9.53□□□□□ -0.88
SCAF11-213ENST00000550629 TERTO14746 1132 aaKnown RBP9.52□□□□□ -0.89
SCAF11-213ENST00000550629 EIF4G3O43432 1585 aaKnown RBP9.52□□□□□ -0.89
SCAF11-213ENST00000550629 EEA1Q15075 1411 aa9.52□□□□□ -0.89
SCAF11-213ENST00000550629 GAPVD1Q14C86 1478 aa9.52□□□□□ -0.89
SCAF11-213ENST00000550629 TDRD9Q8NDG6 1382 aaKnown RBP9.51□□□□□ -0.89
SCAF11-213ENST00000550629 CTHP32929 405 aa9.51□□□□□ -0.89
SCAF11-213ENST00000550629 GRIN2BQ13224 1484 aa9.51□□□□□ -0.89
SCAF11-213ENST00000550629 F12P00748 615 aaPredicted RBP9.5□□□□□ -0.89
SCAF11-213ENST00000550629 HELBQ8NG08 1087 aaPredicted RBP9.5□□□□□ -0.89
SCAF11-213ENST00000550629 MAP10Q9P2G4 905 aa9.5□□□□□ -0.89
SCAF11-213ENST00000550629 AQRO60306 1485 aaKnown RBP eCLIP9.5□□□□□ -0.89
SCAF11-213ENST00000550629 ERICH3Q5RHP9 1530 aa9.5□□□□□ -0.89
SCAF11-213ENST00000550629 CAPN5O15484 640 aaPredicted RBP9.49□□□□□ -0.89
SCAF11-213ENST00000550629 BMP1P13497 986 aa9.49□□□□□ -0.89
SCAF11-213ENST00000550629 SH3BP2P78314 561 aa9.49□□□□□ -0.89
SCAF11-213ENST00000550629 LINC01559Q495D7 138 aa9.49□□□□□ -0.89
SCAF11-213ENST00000550629 PPP2R2DQ66LE6 453 aa9.49□□□□□ -0.89
SCAF11-213ENST00000550629 GOPCQ9HD26 462 aa9.49□□□□□ -0.89
SCAF11-213ENST00000550629 SIAH2O43255 324 aa9.48□□□□□ -0.89
SCAF11-213ENST00000550629 CTDSPL2Q05D32 466 aa9.48□□□□□ -0.89
SCAF11-213ENST00000550629 BAP1Q92560 729 aa9.48□□□□□ -0.89
SCAF11-213ENST00000550629 MAGI1Q96QZ7 1491 aaPredicted RBP9.47□□□□□ -0.89
SCAF11-213ENST00000550629 TLL2Q9Y6L7 1015 aa9.47□□□□□ -0.89
SCAF11-213ENST00000550629 PCMTD1Q96MG8 357 aaPredicted RBP9.46□□□□□ -0.9
SCAF11-213ENST00000550629 IGF1RP08069 1367 aa9.46□□□□□ -0.9
SCAF11-213ENST00000550629 SLC16A10Q8TF71 515 aa9.45□□□□□ -0.9
SCAF11-213ENST00000550629 PBRM1Q86U86 1689 aa9.45□□□□□ -0.9
SCAF11-213ENST00000550629 ZNF511Q8NB15 262 aa9.44□□□□□ -0.9
SCAF11-213ENST00000550629 CUL7Q14999 1698 aa9.44□□□□□ -0.9
SCAF11-213ENST00000550629 RUSC2Q8N2Y8 1516 aa9.43□□□□□ -0.9
SCAF11-213ENST00000550629 SNAPC4Q5SXM2 1469 aa9.43□□□□□ -0.9
SCAF11-213ENST00000550629 FHAD1B1AJZ9 1412 aa9.43□□□□□ -0.9
SCAF11-213ENST00000550629 AP1G2O75843 785 aa9.43□□□□□ -0.9
SCAF11-213ENST00000550629 RFC5P40937 340 aa9.43□□□□□ -0.9
SCAF11-213ENST00000550629 TRIM46Q7Z4K8 759 aa9.43□□□□□ -0.9
SCAF11-213ENST00000550629 LRRN4Q8WUT4 740 aa9.43□□□□□ -0.9
SCAF11-213ENST00000550629 SYNJ2O15056 1496 aa9.42□□□□□ -0.9
SCAF11-213ENST00000550629 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
SCAF11-213ENST00000550629 VARSP26640 1264 aaKnown RBP9.42□□□□□ -0.9
SCAF11-213ENST00000550629 ADAMTS12P58397 1594 aa9.41□□□□□ -0.9
SCAF11-213ENST00000550629 NNTQ13423 1086 aa9.41□□□□□ -0.9
SCAF11-213ENST00000550629 NXF1Q9UBU9 619 aaKnown RBP9.41□□□□□ -0.9
SCAF11-213ENST00000550629 PRXQ9BXM0 1461 aa9.4□□□□□ -0.9
SCAF11-213ENST00000550629 LORP23490 312 aaPredicted RBP9.4□□□□□ -0.9
SCAF11-213ENST00000550629 FOXJ1Q92949 421 aa9.4□□□□□ -0.9
SCAF11-213ENST00000550629 CARMIL1Q5VZK9 1371 aa9.39□□□□□ -0.91
SCAF11-213ENST00000550629 USP17L8P0C7I0 530 aa9.38□□□□□ -0.91
SCAF11-213ENST00000550629 ARMC2Q8NEN0 867 aa9.38□□□□□ -0.91
SCAF11-213ENST00000550629 FAM174AQ8TBP5 190 aa9.38□□□□□ -0.91
SCAF11-213ENST00000550629 RAPGEF2Q9Y4G8 1499 aa9.38□□□□□ -0.91
SCAF11-213ENST00000550629 GRIN2AQ12879 1464 aa9.37□□□□□ -0.91
SCAF11-213ENST00000550629 ADH1CP00326 375 aa9.37□□□□□ -0.91
SCAF11-213ENST00000550629 NR6A1Q15406 480 aa9.37□□□□□ -0.91
SCAF11-213ENST00000550629 CHMP7Q8WUX9 453 aaPredicted RBP9.37□□□□□ -0.91
SCAF11-213ENST00000550629 IRF7Q92985 503 aa9.37□□□□□ -0.91
SCAF11-213ENST00000550629 KIF21BO75037 1637 aa9.37□□□□□ -0.91
SCAF11-213ENST00000550629 WDR4P57081 412 aaKnown RBP9.36□□□□□ -0.91
SCAF11-213ENST00000550629 SCARF1Q14162 830 aa9.36□□□□□ -0.91
SCAF11-213ENST00000550629 C4orf48Q5BLP8 95 aa9.36□□□□□ -0.91
SCAF11-213ENST00000550629 NPAS3Q8IXF0 933 aa9.36□□□□□ -0.91
SCAF11-213ENST00000550629 MPNDQ8N594 471 aa9.36□□□□□ -0.91
SCAF11-213ENST00000550629 ZFP42Q96MM3 310 aa9.36□□□□□ -0.91
SCAF11-213ENST00000550629 HMX1Q9NP08 348 aaPredicted RBP9.36□□□□□ -0.91
SCAF11-213ENST00000550629 VEGFBP49765 207 aa9.35□□□□□ -0.91
SCAF11-213ENST00000550629 AGERQ15109 404 aa9.35□□□□□ -0.91
SCAF11-213ENST00000550629 TMEM259Q4ZIN3 620 aa9.35□□□□□ -0.91
SCAF11-213ENST00000550629 NBPF14Q5TI25 921 aa9.35□□□□□ -0.91
SCAF11-213ENST00000550629 MRPL14Q6P1L8 145 aaKnown RBP9.35□□□□□ -0.91
SCAF11-213ENST00000550629 EPS8L1Q8TE68 723 aa9.35□□□□□ -0.91
SCAF11-213ENST00000550629 ARID5BQ14865 1188 aa9.34□□□□□ -0.91
SCAF11-213ENST00000550629 BPHLQ86WA6 291 aaPredicted RBP9.34□□□□□ -0.91
SCAF11-213ENST00000550629 FAM9AQ8IZU1 332 aaPredicted RBP9.34□□□□□ -0.91
SCAF11-213ENST00000550629 ZSCAN1Q8NBB4 408 aa9.34□□□□□ -0.91
SCAF11-213ENST00000550629 NUP160Q12769 1436 aa9.33□□□□□ -0.92
SCAF11-213ENST00000550629 H3BM21 787 aa9.33□□□□□ -0.92
SCAF11-213ENST00000550629 TIMP2P16035 220 aa9.33□□□□□ -0.92
SCAF11-213ENST00000550629 GMPRP36959 345 aa9.33□□□□□ -0.92
SCAF11-213ENST00000550629 SH3BP5LQ7L8J4 393 aa9.33□□□□□ -0.92
SCAF11-213ENST00000550629 PURBQ96QR8 312 aaKnown RBP9.33□□□□□ -0.92
SCAF11-213ENST00000550629 FKBPLQ9UIM3 349 aa9.33□□□□□ -0.92
SCAF11-213ENST00000550629 CHD1O14646 1710 aa9.33□□□□□ -0.92
SCAF11-213ENST00000550629 SH3RF1Q7Z6J0 888 aa9.32□□□□□ -0.92
SCAF11-213ENST00000550629 GPKOWQ92917 476 aaPredicted RBP eCLIP9.32□□□□□ -0.92
SCAF11-213ENST00000550629 GOLGA3Q08378 1498 aa9.32□□□□□ -0.92
SCAF11-213ENST00000550629 MAGEB6P1A0A0J9YX57 407 aa9.3□□□□□ -0.92
SCAF11-213ENST00000550629 PDXDC2PQ6P474 469 aa9.3□□□□□ -0.92
SCAF11-213ENST00000550629 KIAA0586Q9BVV6 1533 aa9.3□□□□□ -0.92
SCAF11-213ENST00000550629 CEP170Q5SW79 1584 aa9.29□□□□□ -0.92
SCAF11-213ENST00000550629 CDK15Q96Q40 435 aa9.29□□□□□ -0.92
SCAF11-213ENST00000550629 C1QTNF2Q9BXJ5 285 aa9.29□□□□□ -0.92
SCAF11-213ENST00000550629 CARD14Q9BXL6 1004 aa9.29□□□□□ -0.92
SCAF11-213ENST00000550629 TRIM34Q9BYJ4 488 aa9.29□□□□□ -0.92
SCAF11-213ENST00000550629 CLASP1Q7Z460 1538 aa9.28□□□□□ -0.92
SCAF11-213ENST00000550629 ZIC2O95409 532 aaPredicted RBP9.28□□□□□ -0.92
SCAF11-213ENST00000550629 ERBB4Q15303 1308 aa9.28□□□□□ -0.92
SCAF11-213ENST00000550629 ZC3H4Q9UPT8 1303 aaKnown RBP9.28□□□□□ -0.92
SCAF11-213ENST00000550629 NR5A1Q13285 461 aa9.27□□□□□ -0.93
SCAF11-213ENST00000550629 ARHGAP9Q9BRR9 750 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms