RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 EID1Q9Y6B2 187 aa23.69■■□□□ 1.38
PRPF40B-208ENST00000548436 TTC21BQ7Z4L5 1316 aa23.69■■□□□ 1.38
PRPF40B-208ENST00000548436 PLPPR3Q6T4P5 718 aa23.68■■□□□ 1.38
PRPF40B-208ENST00000548436 RWDD1Q9H446 243 aaPredicted RBP23.68■■□□□ 1.38
PRPF40B-208ENST00000548436 LAS1LQ9Y4W2 734 aaKnown RBP23.68■■□□□ 1.38
PRPF40B-208ENST00000548436 PLEKHG3A1L390 1219 aa23.68■■□□□ 1.38
PRPF40B-208ENST00000548436 ALDH1L2Q3SY69 923 aa23.66■■□□□ 1.38
PRPF40B-208ENST00000548436 PDZRN3Q9UPQ7 1066 aa23.66■■□□□ 1.38
PRPF40B-208ENST00000548436 USP6P35125 1406 aa23.65■■□□□ 1.38
PRPF40B-208ENST00000548436 ITPRIPQ8IWB1 547 aa23.65■■□□□ 1.38
PRPF40B-208ENST00000548436 AMOTL2Q9Y2J4 779 aa23.65■■□□□ 1.38
PRPF40B-208ENST00000548436 NALCNQ8IZF0 1738 aa23.65■■□□□ 1.38
PRPF40B-208ENST00000548436 OVOS2A0A0J9YW53 1432 aa23.65■■□□□ 1.38
PRPF40B-208ENST00000548436 OVOS2Q6IE36 1432 aa23.65■■□□□ 1.38
PRPF40B-208ENST00000548436 KIF16BQ96L93 1317 aa23.64■■□□□ 1.38
PRPF40B-208ENST00000548436 DDX19BQ9UMR2 479 aa23.64■■□□□ 1.38
PRPF40B-208ENST00000548436 TMEM57Q8N5G2 664 aa23.64■■□□□ 1.37
PRPF40B-208ENST00000548436 RGPD8O14715 1765 aaPredicted RBP23.64■■□□□ 1.37
PRPF40B-208ENST00000548436 CALD1Q05682 793 aaKnown RBP23.63■■□□□ 1.37
PRPF40B-208ENST00000548436 ZNF853P0CG23 659 aa23.62■■□□□ 1.37
PRPF40B-208ENST00000548436 IFT57Q9NWB7 429 aa23.62■■□□□ 1.37
PRPF40B-208ENST00000548436 TBX22Q9Y458 520 aa23.62■■□□□ 1.37
PRPF40B-208ENST00000548436 PEAK1Q9H792 1746 aa23.62■■□□□ 1.37
PRPF40B-208ENST00000548436 IPO8O15397 1037 aaKnown RBP23.61■■□□□ 1.37
PRPF40B-208ENST00000548436 VAMP4O75379 141 aa23.61■■□□□ 1.37
PRPF40B-208ENST00000548436 GNAI1P63096 354 aa23.61■■□□□ 1.37
PRPF40B-208ENST00000548436 EIF4A2Q14240 407 aaKnown RBP23.61■■□□□ 1.37
PRPF40B-208ENST00000548436 BRPF1P55201 1214 aaPredicted RBP23.6■■□□□ 1.37
PRPF40B-208ENST00000548436 TSPYL6Q8N831 410 aa23.6■■□□□ 1.37
PRPF40B-208ENST00000548436 ZNF428Q96B54 188 aa23.6■■□□□ 1.37
PRPF40B-208ENST00000548436 MBIPQ9NS73 344 aa23.6■■□□□ 1.37
PRPF40B-208ENST00000548436 SSH2Q76I76 1423 aa23.6■■□□□ 1.37
PRPF40B-208ENST00000548436 PTCH1Q13635 1447 aa23.59■■□□□ 1.37
PRPF40B-208ENST00000548436 USP19O94966 1318 aa23.59■■□□□ 1.37
PRPF40B-208ENST00000548436 FAM83GA6ND36 823 aa23.58■■□□□ 1.37
PRPF40B-208ENST00000548436 SEC24BO95487 1268 aa23.58■■□□□ 1.37
PRPF40B-208ENST00000548436 AEBP1Q8IUX7 1158 aa23.58■■□□□ 1.37
PRPF40B-208ENST00000548436 LMOD3Q0VAK6 560 aa23.58■■□□□ 1.36
PRPF40B-208ENST00000548436 HDAC1Q13547 482 aaPredicted RBP23.58■■□□□ 1.36
PRPF40B-208ENST00000548436 THEMISQ8N1K5 641 aaPredicted RBP23.58■■□□□ 1.36
PRPF40B-208ENST00000548436 ZBTB40Q9NUA8 1239 aa23.58■■□□□ 1.36
PRPF40B-208ENST00000548436 SLC4A3P48751 1232 aa23.57■■□□□ 1.36
PRPF40B-208ENST00000548436 DIP2AQ14689 1571 aa23.57■■□□□ 1.36
PRPF40B-208ENST00000548436 USP31Q70CQ4 1352 aa23.57■■□□□ 1.36
PRPF40B-208ENST00000548436 CFAP44Q96MT7 982 aa23.56■■□□□ 1.36
PRPF40B-208ENST00000548436 RGPD1P0DJD0 1748 aa23.56■■□□□ 1.36
PRPF40B-208ENST00000548436 SULT6B1Q6IMI4 303 aa23.56■■□□□ 1.36
PRPF40B-208ENST00000548436 MRPL50Q8N5N7 158 aaKnown RBP23.56■■□□□ 1.36
PRPF40B-208ENST00000548436 DCTN1Q14203 1278 aa23.55■■□□□ 1.36
PRPF40B-208ENST00000548436 XRN1Q8IZH2 1706 aaKnown RBP23.55■■□□□ 1.36
PRPF40B-208ENST00000548436 ELL2O00472 640 aaPredicted RBP23.55■■□□□ 1.36
PRPF40B-208ENST00000548436 HSP90AB2PQ58FF8 381 aa23.55■■□□□ 1.36
PRPF40B-208ENST00000548436 FMN2Q9NZ56 1722 aa23.53■■□□□ 1.36
PRPF40B-208ENST00000548436 C8orf58Q8NAV2 365 aa23.53■■□□□ 1.36
PRPF40B-208ENST00000548436 TWISTNBQ3B726 338 aaPredicted RBP23.52■■□□□ 1.36
PRPF40B-208ENST00000548436 SOX12O15370 315 aa23.52■■□□□ 1.35
PRPF40B-208ENST00000548436 TTC21AQ8NDW8 1320 aa23.51■■□□□ 1.35
PRPF40B-208ENST00000548436 RIMS1Q86UR5 1692 aaKnown RBP23.51■■□□□ 1.35
PRPF40B-208ENST00000548436 SMC5Q8IY18 1101 aa23.5■■□□□ 1.35
PRPF40B-208ENST00000548436 ARHGAP45Q92619 1136 aa23.5■■□□□ 1.35
PRPF40B-208ENST00000548436 ADAMTSL3P82987 1691 aa23.49■■□□□ 1.35
PRPF40B-208ENST00000548436 PIK3R4Q99570 1358 aa23.49■■□□□ 1.35
PRPF40B-208ENST00000548436 RTL5Q5HYW3 569 aaPredicted RBP23.48■■□□□ 1.35
PRPF40B-208ENST00000548436 NGDNQ8NEJ9 315 aaKnown RBP23.48■■□□□ 1.35
PRPF40B-208ENST00000548436 DAXXQ9UER7 740 aaPredicted RBP23.48■■□□□ 1.35
PRPF40B-208ENST00000548436 PIK3C2AO00443 1686 aa23.48■■□□□ 1.35
PRPF40B-208ENST00000548436 MAP3K19Q56UN5 1328 aa23.48■■□□□ 1.35
PRPF40B-208ENST00000548436 ZBTB7BO15156 539 aaPredicted RBP23.47■■□□□ 1.35
PRPF40B-208ENST00000548436 KCNA6P17658 529 aa23.46■■□□□ 1.35
PRPF40B-208ENST00000548436 CEP170BQ9Y4F5 1589 aaPredicted RBP23.46■■□□□ 1.35
PRPF40B-208ENST00000548436 DEKP35659 375 aaKnown RBP23.45■■□□□ 1.35
PRPF40B-208ENST00000548436 ABCC4O15439 1325 aa23.44■■□□□ 1.34
PRPF40B-208ENST00000548436 MCM10Q7L590 875 aa23.44■■□□□ 1.34
PRPF40B-208ENST00000548436 SBNO1A3KN83 1393 aa23.43■■□□□ 1.34
PRPF40B-208ENST00000548436 MARF1Q9Y4F3 1742 aaKnown RBP23.43■■□□□ 1.34
PRPF40B-208ENST00000548436 ARHGEF10O15013 1369 aa23.42■■□□□ 1.34
PRPF40B-208ENST00000548436 FLT4P35916 1363 aa23.42■■□□□ 1.34
PRPF40B-208ENST00000548436 ANKARQ7Z5J8 1434 aa23.42■■□□□ 1.34
PRPF40B-208ENST00000548436 CHL1O00533 1208 aa23.41■■□□□ 1.34
PRPF40B-208ENST00000548436 NUCB1Q02818 461 aa23.4■■□□□ 1.34
PRPF40B-208ENST00000548436 KRT24Q2M2I5 525 aa23.4■■□□□ 1.34
PRPF40B-208ENST00000548436 C1orf115Q9H7X2 142 aa23.4■■□□□ 1.34
PRPF40B-208ENST00000548436 USP35Q9P2H5 1018 aa23.39■■□□□ 1.34
PRPF40B-208ENST00000548436 TBC1D32Q96NH3 1257 aa23.39■■□□□ 1.33
PRPF40B-208ENST00000548436 CHMP4BQ9H444 224 aaKnown RBP23.39■■□□□ 1.33
PRPF40B-208ENST00000548436 API5Q9BZZ5 524 aaKnown RBP23.38■■□□□ 1.33
PRPF40B-208ENST00000548436 CHD2O14647 1828 aaKnown RBP23.38■■□□□ 1.33
PRPF40B-208ENST00000548436 CRB1P82279 1406 aa23.38■■□□□ 1.33
PRPF40B-208ENST00000548436 AMPHP49418 695 aa23.37■■□□□ 1.33
PRPF40B-208ENST00000548436 KDRP35968 1356 aa23.37■■□□□ 1.33
PRPF40B-208ENST00000548436 FOXO3O43524 673 aa23.37■■□□□ 1.33
PRPF40B-208ENST00000548436 NLRP6P59044 892 aa23.37■■□□□ 1.33
PRPF40B-208ENST00000548436 UPF2Q9HAU5 1272 aaKnown RBP23.37■■□□□ 1.33
PRPF40B-208ENST00000548436 MTHFSDQ2M296 383 aaKnown RBP23.36■■□□□ 1.33
PRPF40B-208ENST00000548436 EYA1Q99502 592 aa23.36■■□□□ 1.33
PRPF40B-208ENST00000548436 LNPKQ9C0E8 428 aa23.36■■□□□ 1.33
PRPF40B-208ENST00000548436 USP54Q70EL1 1684 aa23.35■■□□□ 1.33
PRPF40B-208ENST00000548436 CHD1LQ86WJ1 897 aa23.35■■□□□ 1.33
PRPF40B-208ENST00000548436 SIRT2Q8IXJ6 389 aa23.35■■□□□ 1.33
PRPF40B-208ENST00000548436 IGSF1Q8N6C5 1336 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms