RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 LMO7Q8WWI1 1683 aa15.91■□□□□ 0.14
SNHG1-221ENST00000544983 LTN1O94822 1766 aa15.9■□□□□ 0.14
SNHG1-221ENST00000544983 PARD3Q8TEW0 1356 aa15.9■□□□□ 0.14
SNHG1-221ENST00000544983 TNNT2P45379 298 aaPredicted RBP15.9■□□□□ 0.14
SNHG1-221ENST00000544983 RRS1Q15050 365 aaKnown RBP15.9■□□□□ 0.14
SNHG1-221ENST00000544983 SMG6Q86US8 1419 aaKnown RBP15.9■□□□□ 0.14
SNHG1-221ENST00000544983 BCL9LQ86UU0 1499 aa15.9■□□□□ 0.14
SNHG1-221ENST00000544983 COL18A1P39060 1754 aa15.9■□□□□ 0.14
SNHG1-221ENST00000544983 MAP2P11137 1827 aaKnown RBP15.89■□□□□ 0.13
SNHG1-221ENST00000544983 PLCH1Q4KWH8 1693 aa15.89■□□□□ 0.13
SNHG1-221ENST00000544983 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.89■□□□□ 0.13
SNHG1-221ENST00000544983 ZBTB7CA1YPR0 619 aa15.89■□□□□ 0.13
SNHG1-221ENST00000544983 HOXC9P31274 260 aa15.89■□□□□ 0.13
SNHG1-221ENST00000544983 EVA1CP58658 441 aa15.89■□□□□ 0.13
SNHG1-221ENST00000544983 TRPC5Q9UL62 973 aaPredicted RBP15.89■□□□□ 0.13
SNHG1-221ENST00000544983 CAMTA1Q9Y6Y1 1673 aa15.89■□□□□ 0.13
SNHG1-221ENST00000544983 INSRP06213 1382 aa15.88■□□□□ 0.13
SNHG1-221ENST00000544983 FBLN1P23142 703 aa15.88■□□□□ 0.13
SNHG1-221ENST00000544983 VPS72Q15906 364 aa15.88■□□□□ 0.13
SNHG1-221ENST00000544983 AXIN2Q9Y2T1 843 aa15.88■□□□□ 0.13
SNHG1-221ENST00000544983 COL5A2P05997 1499 aaPredicted RBP15.87■□□□□ 0.13
SNHG1-221ENST00000544983 EMILIN1Q9Y6C2 1016 aa15.87■□□□□ 0.13
SNHG1-221ENST00000544983 CDK12Q9NYV4 1490 aaPredicted RBP15.86■□□□□ 0.13
SNHG1-221ENST00000544983 PPM1GO15355 546 aaPredicted RBP15.86■□□□□ 0.13
SNHG1-221ENST00000544983 MTHFSP49914 203 aa15.86■□□□□ 0.13
SNHG1-221ENST00000544983 PRKRIP1Q9H875 184 aaPredicted RBP15.86■□□□□ 0.13
SNHG1-221ENST00000544983 QTRT2Q9H974 415 aaKnown RBP15.86■□□□□ 0.13
SNHG1-221ENST00000544983 ERBB3P21860 1342 aa15.86■□□□□ 0.13
SNHG1-221ENST00000544983 WDR17Q8IZU2 1322 aa15.86■□□□□ 0.13
SNHG1-221ENST00000544983 ANP32CO43423 234 aa15.85■□□□□ 0.13
SNHG1-221ENST00000544983 PPP2R1AP30153 589 aa15.85■□□□□ 0.13
SNHG1-221ENST00000544983 CNGB1Q14028 1251 aaPredicted RBP15.85■□□□□ 0.13
SNHG1-221ENST00000544983 UPF1Q92900 1129 aaKnown RBP eCLIP15.85■□□□□ 0.13
SNHG1-221ENST00000544983 CFAP53Q96M91 514 aa15.85■□□□□ 0.13
SNHG1-221ENST00000544983 ATRNO75882 1429 aa15.85■□□□□ 0.13
SNHG1-221ENST00000544983 CSB-PGBD3P0DP91 1061 aa15.84■□□□□ 0.13
SNHG1-221ENST00000544983 HSP90AB2PQ58FF8 381 aa15.84■□□□□ 0.13
SNHG1-221ENST00000544983 ANKRD24Q8TF21 1146 aa15.84■□□□□ 0.13
SNHG1-221ENST00000544983 STRN4Q9NRL3 753 aa15.84■□□□□ 0.13
SNHG1-221ENST00000544983 THRAP3Q9Y2W1 955 aaKnown RBP15.84■□□□□ 0.13
SNHG1-221ENST00000544983 NRAPQ86VF7 1730 aa15.84■□□□□ 0.13
SNHG1-221ENST00000544983 CRB1P82279 1406 aa15.84■□□□□ 0.13
SNHG1-221ENST00000544983 GJD4Q96KN9 370 aaPredicted RBP15.83■□□□□ 0.12
SNHG1-221ENST00000544983 CARD10Q9BWT7 1032 aa15.83■□□□□ 0.12
SNHG1-221ENST00000544983 MYBBP1AQ9BQG0 1328 aaKnown RBP15.83■□□□□ 0.12
SNHG1-221ENST00000544983 FAM208AQ9UK61 1670 aaKnown RBP15.83■□□□□ 0.12
SNHG1-221ENST00000544983 PEAK1Q9H792 1746 aa15.82■□□□□ 0.12
SNHG1-221ENST00000544983 RBM6P78332 1123 aaKnown RBP15.82■□□□□ 0.12
SNHG1-221ENST00000544983 TOM1L2Q6ZVM7 507 aa15.82■□□□□ 0.12
SNHG1-221ENST00000544983 SPATA31A5Q5VU36 1347 aa15.82■□□□□ 0.12
SNHG1-221ENST00000544983 SPATA31A7Q8IWB4 1347 aa15.82■□□□□ 0.12
SNHG1-221ENST00000544983 SPATA31A1Q5TZJ5 1347 aa15.81■□□□□ 0.12
SNHG1-221ENST00000544983 LARP1Q6PKG0 1096 aaKnown RBP15.81■□□□□ 0.12
SNHG1-221ENST00000544983 RGPD5Q99666 1765 aa15.81■□□□□ 0.12
SNHG1-221ENST00000544983 CCDC9Q9Y3X0 531 aaKnown RBP15.81■□□□□ 0.12
SNHG1-221ENST00000544983 RXRBP28702 533 aa15.8■□□□□ 0.12
SNHG1-221ENST00000544983 TCP11L2Q8N4U5 519 aa15.8■□□□□ 0.12
SNHG1-221ENST00000544983 CDCA7Q9BWT1 371 aaPredicted RBP15.8■□□□□ 0.12
SNHG1-221ENST00000544983 NLRP2Q9NX02 1062 aa15.8■□□□□ 0.12
SNHG1-221ENST00000544983 BARGINQ6ZT62 677 aa15.79■□□□□ 0.12
SNHG1-221ENST00000544983 ONECUT3O60422 494 aaPredicted RBP15.78■□□□□ 0.12
SNHG1-221ENST00000544983 DIAPH1O60610 1272 aaKnown RBP15.78■□□□□ 0.12
SNHG1-221ENST00000544983 EIF4A2Q14240 407 aaKnown RBP15.78■□□□□ 0.12
SNHG1-221ENST00000544983 LTV1Q96GA3 475 aaPredicted RBP15.78■□□□□ 0.12
SNHG1-221ENST00000544983 NUDCQ9Y266 331 aa15.78■□□□□ 0.12
SNHG1-221ENST00000544983 PLEKHG2Q9H7P9 1386 aa15.76■□□□□ 0.11
SNHG1-221ENST00000544983 IL13P35225 146 aa15.76■□□□□ 0.11
SNHG1-221ENST00000544983 DIEXFQ68CQ4 756 aaKnown RBP15.76■□□□□ 0.11
SNHG1-221ENST00000544983 IGSF1Q8N6C5 1336 aa15.75■□□□□ 0.11
SNHG1-221ENST00000544983 SRCAPQ6ZRS2 3230 aa15.75■□□□□ 0.11
SNHG1-221ENST00000544983 NBPF6Q5VWK0 638 aa15.75■□□□□ 0.11
SNHG1-221ENST00000544983 NBPF4Q96M43 638 aa15.75■□□□□ 0.11
SNHG1-221ENST00000544983 NCAPD2Q15021 1401 aa15.75■□□□□ 0.11
SNHG1-221ENST00000544983 COL3A1P02461 1466 aaPredicted RBP15.74■□□□□ 0.11
SNHG1-221ENST00000544983 EYA1Q99502 592 aa15.74■□□□□ 0.11
SNHG1-221ENST00000544983 USP35Q9P2H5 1018 aa15.74■□□□□ 0.11
SNHG1-221ENST00000544983 GLI3P10071 1580 aa15.74■□□□□ 0.11
SNHG1-221ENST00000544983 IL2RBP14784 551 aa15.73■□□□□ 0.11
SNHG1-221ENST00000544983 FAM98CQ17RN3 349 aaKnown RBP15.72■□□□□ 0.11
SNHG1-221ENST00000544983 RAPGEF4Q8WZA2 1011 aa15.72■□□□□ 0.11
SNHG1-221ENST00000544983 KDRP35968 1356 aa15.71■□□□□ 0.11
SNHG1-221ENST00000544983 DISP2A7MBM2 1401 aa15.7■□□□□ 0.1
SNHG1-221ENST00000544983 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.7■□□□□ 0.1
SNHG1-221ENST00000544983 RGPD1P0DJD0 1748 aa15.69■□□□□ 0.1
SNHG1-221ENST00000544983 U2SURPO15042 1029 aaKnown RBP15.69■□□□□ 0.1
SNHG1-221ENST00000544983 TATP17735 454 aaPredicted RBP15.69■□□□□ 0.1
SNHG1-221ENST00000544983 SEPT12Q8IYM1 358 aa15.69■□□□□ 0.1
SNHG1-221ENST00000544983 PNNQ9H307 717 aaKnown RBP15.69■□□□□ 0.1
SNHG1-221ENST00000544983 RGPD2P0DJD1 1756 aa15.68■□□□□ 0.1
SNHG1-221ENST00000544983 THSD7AQ9UPZ6 1657 aa15.68■□□□□ 0.1
SNHG1-221ENST00000544983 A0A0G2JS52 829 aa15.68■□□□□ 0.1
SNHG1-221ENST00000544983 EXOC5O00471 708 aa15.68■□□□□ 0.1
SNHG1-221ENST00000544983 FCHSD2O94868 740 aa15.68■□□□□ 0.1
SNHG1-221ENST00000544983 MYT1Q01538 1121 aa15.68■□□□□ 0.1
SNHG1-221ENST00000544983 SULT6B1Q6IMI4 303 aa15.68■□□□□ 0.1
SNHG1-221ENST00000544983 U2AF1L5P0DN76 240 aaPredicted RBP15.67■□□□□ 0.1
SNHG1-221ENST00000544983 U2AF1Q01081 240 aaKnown RBP eCLIP15.67■□□□□ 0.12e-12■■□□□ 12.7
SNHG1-221ENST00000544983 DDB1Q16531 1140 aa15.67■□□□□ 0.1
SNHG1-221ENST00000544983 USHBP1Q8N6Y0 703 aa15.67■□□□□ 0.1
SNHG1-221ENST00000544983 PARP4Q9UKK3 1724 aaKnown RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms