RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 AFF2P51816 1311 aa16.47■□□□□ 0.23
DDX55-210ENST00000543016 ZBTB7CA1YPR0 619 aa16.47■□□□□ 0.23
DDX55-210ENST00000543016 TNNT2P45379 298 aaPredicted RBP16.47■□□□□ 0.23
DDX55-210ENST00000543016 RRS1Q15050 365 aaKnown RBP16.47■□□□□ 0.23
DDX55-210ENST00000543016 USP21Q9UK80 565 aa16.47■□□□□ 0.23
DDX55-210ENST00000543016 SMG6Q86US8 1419 aaKnown RBP16.46■□□□□ 0.23
DDX55-210ENST00000543016 NWD2Q9ULI1 1742 aa16.46■□□□□ 0.23
DDX55-210ENST00000543016 HOXC9P31274 260 aa16.46■□□□□ 0.23
DDX55-210ENST00000543016 EVA1CP58658 441 aa16.46■□□□□ 0.23
DDX55-210ENST00000543016 FBLN1P23142 703 aa16.45■□□□□ 0.22
DDX55-210ENST00000543016 TRPC5Q9UL62 973 aaPredicted RBP16.45■□□□□ 0.22
DDX55-210ENST00000543016 INSRP06213 1382 aa16.45■□□□□ 0.22
DDX55-210ENST00000543016 LMO7Q8WWI1 1683 aa16.44■□□□□ 0.22
DDX55-210ENST00000543016 BCL9LQ86UU0 1499 aa16.44■□□□□ 0.22
DDX55-210ENST00000543016 ANP32CO43423 234 aa16.44■□□□□ 0.22
DDX55-210ENST00000543016 PPP2R1AP30153 589 aa16.44■□□□□ 0.22
DDX55-210ENST00000543016 VPS72Q15906 364 aa16.44■□□□□ 0.22
DDX55-210ENST00000543016 PRKRIP1Q9H875 184 aaPredicted RBP16.44■□□□□ 0.22
DDX55-210ENST00000543016 AXIN2Q9Y2T1 843 aa16.44■□□□□ 0.22
DDX55-210ENST00000543016 EMILIN1Q9Y6C2 1016 aa16.44■□□□□ 0.22
DDX55-210ENST00000543016 COL18A1P39060 1754 aa16.43■□□□□ 0.22
DDX55-210ENST00000543016 CAMTA1Q9Y6Y1 1673 aa16.43■□□□□ 0.22
DDX55-210ENST00000543016 PPM1GO15355 546 aaPredicted RBP16.43■□□□□ 0.22
DDX55-210ENST00000543016 MTHFSP49914 203 aa16.43■□□□□ 0.22
DDX55-210ENST00000543016 COL5A2P05997 1499 aaPredicted RBP16.42■□□□□ 0.22
DDX55-210ENST00000543016 CDK12Q9NYV4 1490 aaPredicted RBP16.42■□□□□ 0.22
DDX55-210ENST00000543016 LTN1O94822 1766 aa16.42■□□□□ 0.22
DDX55-210ENST00000543016 CNGB1Q14028 1251 aaPredicted RBP16.42■□□□□ 0.22
DDX55-210ENST00000543016 CFAP53Q96M91 514 aa16.42■□□□□ 0.22
DDX55-210ENST00000543016 MAP2P11137 1827 aaKnown RBP16.42■□□□□ 0.22
DDX55-210ENST00000543016 ERBB3P21860 1342 aa16.42■□□□□ 0.22
DDX55-210ENST00000543016 WDR17Q8IZU2 1322 aa16.42■□□□□ 0.22
DDX55-210ENST00000543016 MYBBP1AQ9BQG0 1328 aaKnown RBP16.42■□□□□ 0.22
DDX55-210ENST00000543016 CSB-PGBD3P0DP91 1061 aa16.41■□□□□ 0.22
DDX55-210ENST00000543016 HSP90AB2PQ58FF8 381 aa16.41■□□□□ 0.22
DDX55-210ENST00000543016 ANKRD24Q8TF21 1146 aa16.41■□□□□ 0.22
DDX55-210ENST00000543016 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.41■□□□□ 0.22
DDX55-210ENST00000543016 PLCH1Q4KWH8 1693 aa16.4■□□□□ 0.22
DDX55-210ENST00000543016 ATRNO75882 1429 aa16.4■□□□□ 0.22
DDX55-210ENST00000543016 QTRT2Q9H974 415 aaKnown RBP16.4■□□□□ 0.22
DDX55-210ENST00000543016 STRN4Q9NRL3 753 aa16.4■□□□□ 0.22
DDX55-210ENST00000543016 CARD10Q9BWT7 1032 aa16.39■□□□□ 0.21
DDX55-210ENST00000543016 THRAP3Q9Y2W1 955 aaKnown RBP16.39■□□□□ 0.21
DDX55-210ENST00000543016 CRB1P82279 1406 aa16.38■□□□□ 0.21
DDX55-210ENST00000543016 TOM1L2Q6ZVM7 507 aa16.38■□□□□ 0.21
DDX55-210ENST00000543016 GJD4Q96KN9 370 aaPredicted RBP16.38■□□□□ 0.21
DDX55-210ENST00000543016 RGS17Q9UGC6 210 aaPredicted RBP16.38■□□□□ 0.21
DDX55-210ENST00000543016 SPATA31A5Q5VU36 1347 aa16.38■□□□□ 0.21
DDX55-210ENST00000543016 SPATA31A7Q8IWB4 1347 aa16.38■□□□□ 0.21
DDX55-210ENST00000543016 NRAPQ86VF7 1730 aa16.37■□□□□ 0.21
DDX55-210ENST00000543016 RBM6P78332 1123 aaKnown RBP16.37■□□□□ 0.21
DDX55-210ENST00000543016 LARP1Q6PKG0 1096 aaKnown RBP16.37■□□□□ 0.21
DDX55-210ENST00000543016 SPATA31A1Q5TZJ5 1347 aa16.37■□□□□ 0.21
DDX55-210ENST00000543016 PEAK1Q9H792 1746 aa16.36■□□□□ 0.21
DDX55-210ENST00000543016 DIAPH1O60610 1272 aaKnown RBP16.36■□□□□ 0.21
DDX55-210ENST00000543016 DIEXFQ68CQ4 756 aaKnown RBP16.36■□□□□ 0.21
DDX55-210ENST00000543016 TCP11L2Q8N4U5 519 aa16.36■□□□□ 0.21
DDX55-210ENST00000543016 CNKSR2Q8WXI2 1034 aa16.36■□□□□ 0.21
DDX55-210ENST00000543016 LTV1Q96GA3 475 aaPredicted RBP16.36■□□□□ 0.21
DDX55-210ENST00000543016 CDCA7Q9BWT1 371 aaPredicted RBP16.36■□□□□ 0.21
DDX55-210ENST00000543016 NLRP2Q9NX02 1062 aa16.36■□□□□ 0.21
DDX55-210ENST00000543016 CCDC9Q9Y3X0 531 aaKnown RBP16.36■□□□□ 0.21
DDX55-210ENST00000543016 RXRBP28702 533 aa16.35■□□□□ 0.21
DDX55-210ENST00000543016 EIF4A2Q14240 407 aaKnown RBP16.35■□□□□ 0.21
DDX55-210ENST00000543016 BARGINQ6ZT62 677 aa16.35■□□□□ 0.21
DDX55-210ENST00000543016 NUDCQ9Y266 331 aa16.35■□□□□ 0.21
DDX55-210ENST00000543016 FAM208AQ9UK61 1670 aaKnown RBP16.34■□□□□ 0.21
DDX55-210ENST00000543016 IL13P35225 146 aa16.34■□□□□ 0.21
DDX55-210ENST00000543016 ONECUT3O60422 494 aaPredicted RBP16.33■□□□□ 0.2
DDX55-210ENST00000543016 NBPF6Q5VWK0 638 aa16.32■□□□□ 0.2
DDX55-210ENST00000543016 NBPF4Q96M43 638 aa16.32■□□□□ 0.2
DDX55-210ENST00000543016 RGPD5Q99666 1765 aa16.32■□□□□ 0.2
DDX55-210ENST00000543016 PLEKHG2Q9H7P9 1386 aa16.32■□□□□ 0.2
DDX55-210ENST00000543016 IGSF1Q8N6C5 1336 aa16.31■□□□□ 0.2
DDX55-210ENST00000543016 POTEAQ6S8J7 498 aa16.31■□□□□ 0.2
DDX55-210ENST00000543016 EYA1Q99502 592 aa16.31■□□□□ 0.2
DDX55-210ENST00000543016 COL3A1P02461 1466 aaPredicted RBP16.3■□□□□ 0.2
DDX55-210ENST00000543016 NCAPD2Q15021 1401 aa16.3■□□□□ 0.2
DDX55-210ENST00000543016 IL2RBP14784 551 aa16.29■□□□□ 0.2
DDX55-210ENST00000543016 USP35Q9P2H5 1018 aa16.29■□□□□ 0.2
DDX55-210ENST00000543016 RAPGEF4Q8WZA2 1011 aa16.28■□□□□ 0.2
DDX55-210ENST00000543016 KDRP35968 1356 aa16.27■□□□□ 0.2
DDX55-210ENST00000543016 FAM98CQ17RN3 349 aaKnown RBP16.27■□□□□ 0.2
DDX55-210ENST00000543016 PNNQ9H307 717 aaKnown RBP16.27■□□□□ 0.2
DDX55-210ENST00000543016 GLI3P10071 1580 aa16.26■□□□□ 0.19
DDX55-210ENST00000543016 U2SURPO15042 1029 aaKnown RBP16.26■□□□□ 0.19
DDX55-210ENST00000543016 TATP17735 454 aaPredicted RBP16.26■□□□□ 0.19
DDX55-210ENST00000543016 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.26■□□□□ 0.199e-6■□□□□ 9.4
DDX55-210ENST00000543016 CCER2I3L3R5 266 aa16.25■□□□□ 0.19
DDX55-210ENST00000543016 FCHSD2O94868 740 aa16.25■□□□□ 0.19
DDX55-210ENST00000543016 SULT6B1Q6IMI4 303 aa16.25■□□□□ 0.19
DDX55-210ENST00000543016 DISP2A7MBM2 1401 aa16.25■□□□□ 0.19
DDX55-210ENST00000543016 EXOC5O00471 708 aa16.24■□□□□ 0.19
DDX55-210ENST00000543016 U2AF1L5P0DN76 240 aaPredicted RBP16.24■□□□□ 0.19
DDX55-210ENST00000543016 U2AF1Q01081 240 aaKnown RBP eCLIP16.24■□□□□ 0.19
DDX55-210ENST00000543016 SEPT12Q8IYM1 358 aa16.24■□□□□ 0.19
DDX55-210ENST00000543016 RGPD1P0DJD0 1748 aa16.23■□□□□ 0.19
DDX55-210ENST00000543016 HOXD11P31277 338 aaPredicted RBP16.23■□□□□ 0.19
DDX55-210ENST00000543016 WDR43Q15061 677 aaKnown RBP eCLIP16.23■□□□□ 0.19
DDX55-210ENST00000543016 DDB1Q16531 1140 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 164.8 ms