RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 COL18A1P39060 1754 aa12.21□□□□□ -0.45
CNOT4-212ENST00000541284 EXOSC9Q06265 439 aaKnown RBP12.21□□□□□ -0.45
CNOT4-212ENST00000541284 SAFB2Q14151 953 aaKnown RBP eCLIP12.21□□□□□ -0.46
CNOT4-212ENST00000541284 SSH1Q8WYL5 1049 aa12.21□□□□□ -0.46
CNOT4-212ENST00000541284 BRPF3Q9ULD4 1205 aa12.21□□□□□ -0.46
CNOT4-212ENST00000541284 IL16Q14005 1332 aa12.21□□□□□ -0.46
CNOT4-212ENST00000541284 PRR36Q9H6K5 1346 aa12.21□□□□□ -0.46
CNOT4-212ENST00000541284 NCAPD2Q15021 1401 aa12.2□□□□□ -0.46
CNOT4-212ENST00000541284 ABCA3Q99758 1704 aa12.2□□□□□ -0.46
CNOT4-212ENST00000541284 RGPD2P0DJD1 1756 aa12.2□□□□□ -0.46
CNOT4-212ENST00000541284 SLIT3O75094 1523 aa12.2□□□□□ -0.46
CNOT4-212ENST00000541284 KDM3BQ7LBC6 1761 aa12.2□□□□□ -0.46
CNOT4-212ENST00000541284 LTKP29376 864 aa12.2□□□□□ -0.46
CNOT4-212ENST00000541284 ZKSCAN2Q63HK3 967 aa12.2□□□□□ -0.46
CNOT4-212ENST00000541284 HDAC1Q13547 482 aaPredicted RBP12.19□□□□□ -0.46
CNOT4-212ENST00000541284 DZIP1LQ8IYY4 767 aaKnown RBP12.19□□□□□ -0.46
CNOT4-212ENST00000541284 PRAM1Q96QH2 718 aa12.19□□□□□ -0.46
CNOT4-212ENST00000541284 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.18□□□□□ -0.46
CNOT4-212ENST00000541284 USP6P35125 1406 aa12.18□□□□□ -0.46
CNOT4-212ENST00000541284 TBC1D2Q9BYX2 928 aa12.18□□□□□ -0.46
CNOT4-212ENST00000541284 RWDD1Q9H446 243 aaPredicted RBP12.18□□□□□ -0.46
CNOT4-212ENST00000541284 STK26Q9P289 416 aa12.18□□□□□ -0.46
CNOT4-212ENST00000541284 ABCC6O95255 1503 aa12.18□□□□□ -0.46
CNOT4-212ENST00000541284 MINK1Q8N4C8 1332 aaPredicted RBP12.18□□□□□ -0.46
CNOT4-212ENST00000541284 SMC5Q8IY18 1101 aa12.17□□□□□ -0.46
CNOT4-212ENST00000541284 ZBTB40Q9NUA8 1239 aa12.17□□□□□ -0.46
CNOT4-212ENST00000541284 ATF7IPQ6VMQ6 1270 aa12.16□□□□□ -0.46
CNOT4-212ENST00000541284 DAXXQ9UER7 740 aaPredicted RBP12.16□□□□□ -0.46
CNOT4-212ENST00000541284 SRPK2P78362 688 aaKnown RBP12.16□□□□□ -0.46
CNOT4-212ENST00000541284 RSPH6AQ9H0K4 717 aa12.15□□□□□ -0.46
CNOT4-212ENST00000541284 SMC4Q9NTJ3 1288 aa12.15□□□□□ -0.46
CNOT4-212ENST00000541284 NOB1Q9ULX3 412 aaKnown RBP12.15□□□□□ -0.46
CNOT4-212ENST00000541284 TMEM57Q8N5G2 664 aa12.15□□□□□ -0.46
CNOT4-212ENST00000541284 U2SURPO15042 1029 aaKnown RBP12.14□□□□□ -0.47
CNOT4-212ENST00000541284 POGKQ9P215 609 aa12.14□□□□□ -0.47
CNOT4-212ENST00000541284 CACNA1FO60840 1977 aa12.14□□□□□ -0.47
CNOT4-212ENST00000541284 BRPF1P55201 1214 aaPredicted RBP12.14□□□□□ -0.47
CNOT4-212ENST00000541284 CDK19Q9BWU1 502 aa12.14□□□□□ -0.47
CNOT4-212ENST00000541284 SENP3Q9H4L4 574 aaPredicted RBP12.14□□□□□ -0.47
CNOT4-212ENST00000541284 NCOA3Q9Y6Q9 1424 aa12.14□□□□□ -0.47
CNOT4-212ENST00000541284 WASLO00401 505 aaPredicted RBP12.13□□□□□ -0.47
CNOT4-212ENST00000541284 FBLN1P23142 703 aa12.13□□□□□ -0.47
CNOT4-212ENST00000541284 RIPK4P57078 832 aa12.13□□□□□ -0.47
CNOT4-212ENST00000541284 TERF2IPQ9NYB0 399 aa12.13□□□□□ -0.47
CNOT4-212ENST00000541284 RGPD5Q99666 1765 aa12.13□□□□□ -0.47
CNOT4-212ENST00000541284 RTN4Q9NQC3 1192 aaKnown RBP12.13□□□□□ -0.47
CNOT4-212ENST00000541284 CABP1Q9NZU7 370 aa12.13□□□□□ -0.47
CNOT4-212ENST00000541284 POLKQ9UBT6 870 aa12.13□□□□□ -0.47
CNOT4-212ENST00000541284 DDX19BQ9UMR2 479 aa12.13□□□□□ -0.47
CNOT4-212ENST00000541284 GLI3P10071 1580 aa12.12□□□□□ -0.47
CNOT4-212ENST00000541284 PLEKHG3A1L390 1219 aa12.12□□□□□ -0.47
CNOT4-212ENST00000541284 DIAPH1O60610 1272 aaKnown RBP12.12□□□□□ -0.47
CNOT4-212ENST00000541284 ZNF692Q9BU19 519 aaPredicted RBP12.12□□□□□ -0.47
CNOT4-212ENST00000541284 SHANK3Q9BYB0 1731 aa12.12□□□□□ -0.47
CNOT4-212ENST00000541284 PARP4Q9UKK3 1724 aaKnown RBP12.12□□□□□ -0.47
CNOT4-212ENST00000541284 FTSJ3Q8IY81 847 aaKnown RBP12.12□□□□□ -0.47
CNOT4-212ENST00000541284 SLKQ9H2G2 1235 aaPredicted RBP12.12□□□□□ -0.47
CNOT4-212ENST00000541284 TBX22Q9Y458 520 aa12.12□□□□□ -0.47
CNOT4-212ENST00000541284 DDIT3P35638 169 aa12.11□□□□□ -0.47
CNOT4-212ENST00000541284 BECN1Q14457 450 aa12.11□□□□□ -0.47
CNOT4-212ENST00000541284 ALDH1L2Q3SY69 923 aa12.11□□□□□ -0.47
CNOT4-212ENST00000541284 PHACTR3Q96KR7 559 aa12.11□□□□□ -0.47
CNOT4-212ENST00000541284 FCHSD2O94868 740 aa12.11□□□□□ -0.47
CNOT4-212ENST00000541284 PKD1L3Q7Z443 1732 aa12.11□□□□□ -0.47
CNOT4-212ENST00000541284 ITPRIPQ8IWB1 547 aa12.1□□□□□ -0.47
CNOT4-212ENST00000541284 ZNF853P0CG23 659 aa12.1□□□□□ -0.47
CNOT4-212ENST00000541284 NUCB1Q02818 461 aa12.1□□□□□ -0.47
CNOT4-212ENST00000541284 KIF16BQ96L93 1317 aa12.09□□□□□ -0.47
CNOT4-212ENST00000541284 WAPLQ7Z5K2 1190 aa12.09□□□□□ -0.47
CNOT4-212ENST00000541284 KDRP35968 1356 aa12.09□□□□□ -0.47
CNOT4-212ENST00000541284 VAMP4O75379 141 aa12.08□□□□□ -0.48
CNOT4-212ENST00000541284 PRKAR2BP31323 418 aa12.08□□□□□ -0.48
CNOT4-212ENST00000541284 IL13P35225 146 aa12.08□□□□□ -0.48
CNOT4-212ENST00000541284 MRPL50Q8N5N7 158 aaKnown RBP12.08□□□□□ -0.48
CNOT4-212ENST00000541284 C22orf23Q9BZE7 217 aa12.08□□□□□ -0.48
CNOT4-212ENST00000541284 ZBTB7BO15156 539 aaPredicted RBP12.08□□□□□ -0.48
CNOT4-212ENST00000541284 HDGFL2Q7Z4V5 671 aaPredicted RBP12.08□□□□□ -0.48
CNOT4-212ENST00000541284 TSPYL6Q8N831 410 aa12.08□□□□□ -0.48
CNOT4-212ENST00000541284 SIRT2Q8IXJ6 389 aa12.07□□□□□ -0.48
CNOT4-212ENST00000541284 ADGRL3Q9HAR2 1447 aa12.07□□□□□ -0.48
CNOT4-212ENST00000541284 RBM25P49756 843 aaKnown RBP12.07□□□□□ -0.48
CNOT4-212ENST00000541284 KIF2CQ99661 725 aa12.07□□□□□ -0.48
CNOT4-212ENST00000541284 THUMPD2Q9BTF0 503 aaKnown RBP12.07□□□□□ -0.48
CNOT4-212ENST00000541284 ABCC4O15439 1325 aa12.07□□□□□ -0.48
CNOT4-212ENST00000541284 PAPPAQ13219 1627 aa12.07□□□□□ -0.48
CNOT4-212ENST00000541284 NFE2L2Q16236 605 aa12.07□□□□□ -0.48
CNOT4-212ENST00000541284 ANO8Q9HCE9 1232 aaPredicted RBP12.07□□□□□ -0.48
CNOT4-212ENST00000541284 WNK3Q9BYP7 1800 aa12.06□□□□□ -0.48
CNOT4-212ENST00000541284 ZRANB1Q9UGI0 708 aa12.06□□□□□ -0.48
CNOT4-212ENST00000541284 EMILIN1Q9Y6C2 1016 aa12.06□□□□□ -0.48
CNOT4-212ENST00000541284 NHSL1Q5SYE7 1610 aa12.06□□□□□ -0.48
CNOT4-212ENST00000541284 MFAP1P55081 439 aaKnown RBP12.05□□□□□ -0.48
CNOT4-212ENST00000541284 UPF2Q9HAU5 1272 aaKnown RBP12.05□□□□□ -0.48
CNOT4-212ENST00000541284 KIF24Q5T7B8 1368 aa12.05□□□□□ -0.48
CNOT4-212ENST00000541284 SCN11AQ9UI33 1791 aa12.05□□□□□ -0.48
CNOT4-212ENST00000541284 RGS12O14924 1447 aa12.05□□□□□ -0.48
CNOT4-212ENST00000541284 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.05□□□□□ -0.487e-7■■■■□ 23.2
CNOT4-212ENST00000541284 ZNF428Q96B54 188 aa12.05□□□□□ -0.48
CNOT4-212ENST00000541284 FSD2A1L4K1 749 aa12.04□□□□□ -0.48
CNOT4-212ENST00000541284 ARHGAP45Q92619 1136 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms