RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 FIGNL2A6NMB9 653 aa8.33□□□□□ -1.08
USP48-215ENST00000534705 IRS1P35568 1242 aa8.33□□□□□ -1.08
USP48-215ENST00000534705 GPAT2Q6NUI2 795 aa8.33□□□□□ -1.08
USP48-215ENST00000534705 SV2AQ7L0J3 742 aa8.33□□□□□ -1.08
USP48-215ENST00000534705 GPKOWQ92917 476 aaPredicted RBP eCLIP8.33□□□□□ -1.08
USP48-215ENST00000534705 SPINT1O43278 529 aa8.32□□□□□ -1.08
USP48-215ENST00000534705 ARHGEF15O94989 841 aa8.32□□□□□ -1.08
USP48-215ENST00000534705 Q6ZVU0 165 aa8.32□□□□□ -1.08
USP48-215ENST00000534705 SLC35F4A4IF30 521 aa8.31□□□□□ -1.08
USP48-215ENST00000534705 PER1O15534 1290 aaPredicted RBP8.31□□□□□ -1.08
USP48-215ENST00000534705 SH3BP5LQ7L8J4 393 aa8.31□□□□□ -1.08
USP48-215ENST00000534705 ITGA6P23229 1130 aa8.3□□□□□ -1.08
USP48-215ENST00000534705 RNFT1Q5M7Z0 435 aa8.3□□□□□ -1.08
USP48-215ENST00000534705 VWA5B2Q8N398 1253 aa8.3□□□□□ -1.08
USP48-215ENST00000534705 CABLES1Q8TDN4 633 aa8.3□□□□□ -1.08
USP48-215ENST00000534705 TSC1Q92574 1164 aa8.3□□□□□ -1.08
USP48-215ENST00000534705 MAGEB6P1A0A0J9YX57 407 aa8.29□□□□□ -1.08
USP48-215ENST00000534705 NUTM2BA6NNL0 878 aaPredicted RBP8.29□□□□□ -1.08
USP48-215ENST00000534705 NUTM2EB1AL46 878 aaPredicted RBP8.29□□□□□ -1.08
USP48-215ENST00000534705 TUSC1Q2TAM9 212 aa8.29□□□□□ -1.08
USP48-215ENST00000534705 PPP1R26Q5T8A7 1209 aaPredicted RBP8.29□□□□□ -1.08
USP48-215ENST00000534705 NUTM2DQ5VT03 806 aaPredicted RBP8.29□□□□□ -1.08
USP48-215ENST00000534705 NUTM2AQ8IVF1 878 aaPredicted RBP8.29□□□□□ -1.08
USP48-215ENST00000534705 CDV3Q9UKY7 258 aaKnown RBP8.29□□□□□ -1.08
USP48-215ENST00000534705 CDC14CA4D256 554 aa8.28□□□□□ -1.08
USP48-215ENST00000534705 DHX9Q08211 1270 aaKnown RBP8.28□□□□□ -1.08
USP48-215ENST00000534705 CSPP1Q1MSJ5 1256 aa8.28□□□□□ -1.08
USP48-215ENST00000534705 HELBQ8NG08 1087 aaPredicted RBP8.28□□□□□ -1.08
USP48-215ENST00000534705 WHAMMQ8TF30 809 aa8.27□□□□□ -1.09
USP48-215ENST00000534705 MAP3K10Q02779 954 aa8.26□□□□□ -1.09
USP48-215ENST00000534705 CBLBQ13191 982 aa8.26□□□□□ -1.09
USP48-215ENST00000534705 ENAMQ9NRM1 1142 aa8.26□□□□□ -1.09
USP48-215ENST00000534705 ERFEQ4G0M1 354 aa8.25□□□□□ -1.09
USP48-215ENST00000534705 PARP9Q8IXQ6 854 aa8.25□□□□□ -1.09
USP48-215ENST00000534705 CARD14Q9BXL6 1004 aa8.25□□□□□ -1.09
USP48-215ENST00000534705 LILRB3O75022 631 aa8.24□□□□□ -1.09
USP48-215ENST00000534705 ADAMTS2O95450 1211 aa8.23□□□□□ -1.09
USP48-215ENST00000534705 SRSF11Q05519 484 aaKnown RBP8.23□□□□□ -1.09
USP48-215ENST00000534705 PDXDC2PQ6P474 469 aa8.23□□□□□ -1.09
USP48-215ENST00000534705 KCTD15Q96SI1 283 aaPredicted RBP8.23□□□□□ -1.09
USP48-215ENST00000534705 SLC10A4Q96EP9 437 aa8.22□□□□□ -1.09
USP48-215ENST00000534705 POLMQ9NP87 494 aaPredicted RBP8.22□□□□□ -1.09
USP48-215ENST00000534705 PHF20L1A8MW92 1017 aa8.21□□□□□ -1.1
USP48-215ENST00000534705 CTSOP43234 321 aaPredicted RBP8.21□□□□□ -1.1
USP48-215ENST00000534705 QPCTQ16769 361 aa8.21□□□□□ -1.1
USP48-215ENST00000534705 LYPD4Q6UWN0 246 aa8.21□□□□□ -1.1
USP48-215ENST00000534705 AK7Q96M32 723 aa8.21□□□□□ -1.1
USP48-215ENST00000534705 ARHGAP9Q9BRR9 750 aa8.21□□□□□ -1.1
USP48-215ENST00000534705 LIMD1Q9UGP4 676 aa8.21□□□□□ -1.1
USP48-215ENST00000534705 MSTNO14793 375 aa8.2□□□□□ -1.1
USP48-215ENST00000534705 TRIM66O15016 1216 aa8.2□□□□□ -1.1
USP48-215ENST00000534705 RELBQ01201 579 aa8.2□□□□□ -1.1
USP48-215ENST00000534705 MYSM1Q5VVJ2 828 aa8.2□□□□□ -1.1
USP48-215ENST00000534705 INSM2Q96T92 566 aaPredicted RBP8.2□□□□□ -1.1
USP48-215ENST00000534705 CELA2BP08218 269 aaPredicted RBP8.19□□□□□ -1.1
USP48-215ENST00000534705 ZBTB33Q86T24 672 aa8.19□□□□□ -1.1
USP48-215ENST00000534705 RNF217Q8TC41 542 aa8.19□□□□□ -1.1
USP48-215ENST00000534705 AGBL1Q96MI9 1066 aa8.19□□□□□ -1.1
USP48-215ENST00000534705 SENP3-EIF4A1A0A087X0R7 540 aa8.17□□□□□ -1.1
USP48-215ENST00000534705 RTL5Q5HYW3 569 aaPredicted RBP8.17□□□□□ -1.1
USP48-215ENST00000534705 BEND7Q8N7W2 519 aaPredicted RBP8.17□□□□□ -1.1
USP48-215ENST00000534705 TRIM52Q96A61 297 aa8.17□□□□□ -1.1
USP48-215ENST00000534705 GMCL1Q96IK5 515 aa8.17□□□□□ -1.1
USP48-215ENST00000534705 ZC3H4Q9UPT8 1303 aaKnown RBP8.17□□□□□ -1.1
USP48-215ENST00000534705 ADAM23O75077 832 aa8.16□□□□□ -1.1
USP48-215ENST00000534705 INTS6LQ5JSJ4 861 aaKnown RBP8.16□□□□□ -1.1
USP48-215ENST00000534705 ZNF395Q9H8N7 513 aaPredicted RBP8.16□□□□□ -1.1
USP48-215ENST00000534705 SLC24A3Q9HC58 644 aa8.16□□□□□ -1.1
USP48-215ENST00000534705 FKBPLQ9UIM3 349 aa8.16□□□□□ -1.1
USP48-215ENST00000534705 PTK2Q05397 1052 aa8.15□□□□□ -1.1
USP48-215ENST00000534705 PLA2G4EQ3MJ16 856 aa8.15□□□□□ -1.1
USP48-215ENST00000534705 XP32Q5T750 250 aa8.15□□□□□ -1.1
USP48-215ENST00000534705 FOXR1Q6PIV2 292 aa8.15□□□□□ -1.1
USP48-215ENST00000534705 PODNQ7Z5L7 613 aa8.15□□□□□ -1.1
USP48-215ENST00000534705 CLK2P49760 499 aaKnown RBP8.14□□□□□ -1.11
USP48-215ENST00000534705 LYSMD3Q7Z3D4 306 aa8.14□□□□□ -1.11
USP48-215ENST00000534705 DCAF5Q96JK2 942 aa8.14□□□□□ -1.11
USP48-215ENST00000534705 RSPH6AQ9H0K4 717 aa8.14□□□□□ -1.11
USP48-215ENST00000534705 MBIPQ9NS73 344 aa8.14□□□□□ -1.11
USP48-215ENST00000534705 GPSM3Q9Y4H4 160 aa8.14□□□□□ -1.11
USP48-215ENST00000534705 ADH1AP07327 375 aa8.13□□□□□ -1.11
USP48-215ENST00000534705 GAS6Q14393 721 aa8.13□□□□□ -1.11
USP48-215ENST00000534705 NBPF20Q3BBV1 942 aa8.13□□□□□ -1.11
USP48-215ENST00000534705 TPRNQ4KMQ1 711 aa8.13□□□□□ -1.11
USP48-215ENST00000534705 SPOCK3Q9BQ16 436 aa8.13□□□□□ -1.11
USP48-215ENST00000534705 PTGIRP43119 386 aa8.12□□□□□ -1.11
USP48-215ENST00000534705 CTDSPL2Q05D32 466 aa8.12□□□□□ -1.11
USP48-215ENST00000534705 CNTNAP5Q8WYK1 1306 aa8.11□□□□□ -1.11
USP48-215ENST00000534705 FOXD4L5Q5VV16 416 aaPredicted RBP8.11□□□□□ -1.11
USP48-215ENST00000534705 NEDD1Q8NHV4 660 aa8.11□□□□□ -1.11
USP48-215ENST00000534705 BCRP11274 1271 aa8.1□□□□□ -1.11
USP48-215ENST00000534705 PDE4DQ08499 809 aa8.1□□□□□ -1.11
USP48-215ENST00000534705 TRIM22Q8IYM9 498 aa8.1□□□□□ -1.11
USP48-215ENST00000534705 GALNT6Q8NCL4 622 aa8.1□□□□□ -1.11
USP48-215ENST00000534705 LRRC4BQ9NT99 713 aa8.1□□□□□ -1.11
USP48-215ENST00000534705 ZNF784Q8NCA9 323 aaPredicted RBP8.09□□□□□ -1.11
USP48-215ENST00000534705 PNMA1Q8ND90 353 aa8.09□□□□□ -1.11
USP48-215ENST00000534705 TMPRSS4Q9NRS4 437 aa8.09□□□□□ -1.11
USP48-215ENST00000534705 CUEDC1Q9NWM3 386 aaPredicted RBP8.09□□□□□ -1.11
USP48-215ENST00000534705 IGF1RP08069 1367 aa8.09□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms