RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 RGS12O14924 1447 aa19.82■□□□□ 0.76
CPSF1-206ENST00000531480 PEAK1Q9H792 1746 aa19.82■□□□□ 0.76
CPSF1-206ENST00000531480 RTL1A6NKG5 1358 aa19.82■□□□□ 0.76
CPSF1-206ENST00000531480 AXIN2Q9Y2T1 843 aa19.81■□□□□ 0.76
CPSF1-206ENST00000531480 MAP3K19Q56UN5 1328 aa19.8■□□□□ 0.76
CPSF1-206ENST00000531480 BLMP54132 1417 aaPredicted RBP19.8■□□□□ 0.76
CPSF1-206ENST00000531480 SMG6Q86US8 1419 aaKnown RBP19.8■□□□□ 0.76
CPSF1-206ENST00000531480 ZNF316A6NFI3 1004 aaPredicted RBP19.8■□□□□ 0.76
CPSF1-206ENST00000531480 VPS72Q15906 364 aa19.8■□□□□ 0.76
CPSF1-206ENST00000531480 TRPC5Q9UL62 973 aaPredicted RBP19.8■□□□□ 0.76
CPSF1-206ENST00000531480 GLI3P10071 1580 aa19.79■□□□□ 0.76
CPSF1-206ENST00000531480 SOX12O15370 315 aa19.79■□□□□ 0.76
CPSF1-206ENST00000531480 QTRT2Q9H974 415 aaKnown RBP19.79■□□□□ 0.76
CPSF1-206ENST00000531480 FBLN1P23142 703 aa19.78■□□□□ 0.76
CPSF1-206ENST00000531480 IP6K1Q92551 441 aa19.78■□□□□ 0.76
CPSF1-206ENST00000531480 CDK12Q9NYV4 1490 aaPredicted RBP19.78■□□□□ 0.76
CPSF1-206ENST00000531480 FAM208AQ9UK61 1670 aaKnown RBP19.77■□□□□ 0.76
CPSF1-206ENST00000531480 RRS1Q15050 365 aaKnown RBP19.76■□□□□ 0.75
CPSF1-206ENST00000531480 FLT4P35916 1363 aa19.75■□□□□ 0.75
CPSF1-206ENST00000531480 HOXC9P31274 260 aa19.75■□□□□ 0.75
CPSF1-206ENST00000531480 GJD4Q96KN9 370 aaPredicted RBP19.75■□□□□ 0.75
CPSF1-206ENST00000531480 POLKQ9UBT6 870 aa19.75■□□□□ 0.75
CPSF1-206ENST00000531480 ERBB3P21860 1342 aa19.75■□□□□ 0.75
CPSF1-206ENST00000531480 SPATA31A5Q5VU36 1347 aa19.75■□□□□ 0.75
CPSF1-206ENST00000531480 SPATA31A7Q8IWB4 1347 aa19.75■□□□□ 0.75
CPSF1-206ENST00000531480 RBM6P78332 1123 aaKnown RBP19.74■□□□□ 0.75
CPSF1-206ENST00000531480 DDX10Q13206 875 aaKnown RBP19.74■□□□□ 0.75
CPSF1-206ENST00000531480 MORC1Q86VD1 984 aa19.74■□□□□ 0.75
CPSF1-206ENST00000531480 WDR17Q8IZU2 1322 aa19.74■□□□□ 0.75
CPSF1-206ENST00000531480 INSRP06213 1382 aa19.73■□□□□ 0.75
CPSF1-206ENST00000531480 ONECUT3O60422 494 aaPredicted RBP19.73■□□□□ 0.75
CPSF1-206ENST00000531480 CRB1P82279 1406 aa19.73■□□□□ 0.75
CPSF1-206ENST00000531480 SPATA31A1Q5TZJ5 1347 aa19.73■□□□□ 0.75
CPSF1-206ENST00000531480 CC2D1BQ5T0F9 858 aaKnown RBP19.72■□□□□ 0.75
CPSF1-206ENST00000531480 LARP1Q6PKG0 1096 aaKnown RBP19.72■□□□□ 0.75
CPSF1-206ENST00000531480 UPF1Q92900 1129 aaKnown RBP eCLIP19.72■□□□□ 0.75
CPSF1-206ENST00000531480 EMILIN1Q9Y6C2 1016 aa19.72■□□□□ 0.75
CPSF1-206ENST00000531480 AMPHP49418 695 aa19.71■□□□□ 0.75
CPSF1-206ENST00000531480 WNK3Q9BYP7 1800 aa19.71■□□□□ 0.75
CPSF1-206ENST00000531480 THSD7AQ9UPZ6 1657 aa19.71■□□□□ 0.75
CPSF1-206ENST00000531480 ZBTB7CA1YPR0 619 aa19.7■□□□□ 0.74
CPSF1-206ENST00000531480 STRN4Q9NRL3 753 aa19.7■□□□□ 0.74
CPSF1-206ENST00000531480 PARD3Q8TEW0 1356 aa19.7■□□□□ 0.74
CPSF1-206ENST00000531480 EVA1CP58658 441 aa19.69■□□□□ 0.74
CPSF1-206ENST00000531480 RGPD2P0DJD1 1756 aa19.68■□□□□ 0.74
CPSF1-206ENST00000531480 TNNT2P45379 298 aaPredicted RBP19.68■□□□□ 0.74
CPSF1-206ENST00000531480 HSP90AB2PQ58FF8 381 aa19.68■□□□□ 0.74
CPSF1-206ENST00000531480 BARGINQ6ZT62 677 aa19.68■□□□□ 0.74
CPSF1-206ENST00000531480 ANKRD24Q8TF21 1146 aa19.68■□□□□ 0.74
CPSF1-206ENST00000531480 THRAP3Q9Y2W1 955 aaKnown RBP19.68■□□□□ 0.74
CPSF1-206ENST00000531480 CARD10Q9BWT7 1032 aa19.67■□□□□ 0.74
CPSF1-206ENST00000531480 NCAPD2Q15021 1401 aa19.67■□□□□ 0.74
CPSF1-206ENST00000531480 PARP4Q9UKK3 1724 aaKnown RBP19.66■□□□□ 0.74
CPSF1-206ENST00000531480 TCP11L2Q8N4U5 519 aa19.65■□□□□ 0.74
CPSF1-206ENST00000531480 DISP2A7MBM2 1401 aa19.65■□□□□ 0.74
CPSF1-206ENST00000531480 TOM1L2Q6ZVM7 507 aa19.64■□□□□ 0.73
CPSF1-206ENST00000531480 BRWD3Q6RI45 1802 aa19.64■□□□□ 0.73
CPSF1-206ENST00000531480 RGPD1P0DJD0 1748 aa19.63■□□□□ 0.73
CPSF1-206ENST00000531480 CCDC9Q9Y3X0 531 aaKnown RBP19.63■□□□□ 0.73
CPSF1-206ENST00000531480 COL3A1P02461 1466 aaPredicted RBP19.62■□□□□ 0.73
CPSF1-206ENST00000531480 MTHFSP49914 203 aa19.62■□□□□ 0.73
CPSF1-206ENST00000531480 PPM1GO15355 546 aaPredicted RBP19.61■□□□□ 0.73
CPSF1-206ENST00000531480 CSB-PGBD3P0DP91 1061 aa19.61■□□□□ 0.73
CPSF1-206ENST00000531480 PPP2R1AP30153 589 aa19.6■□□□□ 0.73
CPSF1-206ENST00000531480 RALBP1Q15311 655 aa19.6■□□□□ 0.73
CPSF1-206ENST00000531480 FAM98CQ17RN3 349 aaKnown RBP19.6■□□□□ 0.73
CPSF1-206ENST00000531480 LRRC37A3O60309 1634 aa19.6■□□□□ 0.73
CPSF1-206ENST00000531480 EIF4A2Q14240 407 aaKnown RBP19.59■□□□□ 0.73
CPSF1-206ENST00000531480 NBPF6Q5VWK0 638 aa19.59■□□□□ 0.73
CPSF1-206ENST00000531480 SEPT12Q8IYM1 358 aa19.59■□□□□ 0.73
CPSF1-206ENST00000531480 NBPF4Q96M43 638 aa19.59■□□□□ 0.73
CPSF1-206ENST00000531480 NLRP2Q9NX02 1062 aa19.59■□□□□ 0.73
CPSF1-206ENST00000531480 LTV1Q96GA3 475 aaPredicted RBP19.58■□□□□ 0.72
CPSF1-206ENST00000531480 CDCA7Q9BWT1 371 aaPredicted RBP19.58■□□□□ 0.72
CPSF1-206ENST00000531480 USP35Q9P2H5 1018 aa19.58■□□□□ 0.72
CPSF1-206ENST00000531480 IGSF1Q8N6C5 1336 aa19.56■□□□□ 0.72
CPSF1-206ENST00000531480 IL13P35225 146 aa19.56■□□□□ 0.72
CPSF1-206ENST00000531480 EYA1Q99502 592 aa19.56■□□□□ 0.72
CPSF1-206ENST00000531480 PLEKHG2Q9H7P9 1386 aa19.56■□□□□ 0.72
CPSF1-206ENST00000531480 PRKRIP1Q9H875 184 aaPredicted RBP19.55■□□□□ 0.72
CPSF1-206ENST00000531480 EP400Q96L91 3159 aa19.55■□□□□ 0.72
CPSF1-206ENST00000531480 CNGB1Q14028 1251 aaPredicted RBP19.54■□□□□ 0.72
CPSF1-206ENST00000531480 SHANK3Q9BYB0 1731 aa19.54■□□□□ 0.72
CPSF1-206ENST00000531480 MEGF6O75095 1541 aa19.53■□□□□ 0.72
CPSF1-206ENST00000531480 IL2RBP14784 551 aa19.53■□□□□ 0.72
CPSF1-206ENST00000531480 KDRP35968 1356 aa19.53■□□□□ 0.72
CPSF1-206ENST00000531480 PKD1L3Q7Z443 1732 aa19.53■□□□□ 0.72
CPSF1-206ENST00000531480 OVOS2A0A0G2JMS6 1433 aa19.52■□□□□ 0.72
CPSF1-206ENST00000531480 TNS2Q63HR2 1409 aa19.52■□□□□ 0.72
CPSF1-206ENST00000531480 MYBBP1AQ9BQG0 1328 aaKnown RBP19.51■□□□□ 0.71
CPSF1-206ENST00000531480 DIAPH1O60610 1272 aaKnown RBP19.5■□□□□ 0.71
CPSF1-206ENST00000531480 KRT27Q7Z3Y8 459 aa19.5■□□□□ 0.71
CPSF1-206ENST00000531480 BCL9O00512 1426 aa19.5■□□□□ 0.71
CPSF1-206ENST00000531480 A0A0G2JS52 829 aa19.49■□□□□ 0.71
CPSF1-206ENST00000531480 MYT1Q01538 1121 aa19.49■□□□□ 0.71
CPSF1-206ENST00000531480 USHBP1Q8N6Y0 703 aa19.49■□□□□ 0.71
CPSF1-206ENST00000531480 CFAP53Q96M91 514 aa19.49■□□□□ 0.71
CPSF1-206ENST00000531480 DDB1Q16531 1140 aa19.48■□□□□ 0.71
CPSF1-206ENST00000531480 EXOC5O00471 708 aa19.46■□□□□ 0.71
CPSF1-206ENST00000531480 RAPGEF4Q8WZA2 1011 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms