RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 USP54Q70EL1 1684 aa28.2■■■□□ 2.1
VPS28-212ENST00000530836 MARF1Q9Y4F3 1742 aaKnown RBP28.19■■■□□ 2.1
VPS28-212ENST00000530836 ARHGEF25Q86VW2 580 aa28.18■■■□□ 2.1
VPS28-212ENST00000530836 CHRNA2Q15822 529 aa28.18■■■□□ 2.1
VPS28-212ENST00000530836 ZNF772Q68DY9 489 aaPredicted RBP28.16■■■□□ 2.1
VPS28-212ENST00000530836 USP21Q9UK80 565 aa28.16■■■□□ 2.1
VPS28-212ENST00000530836 NFAT5O94916 1531 aa28.16■■■□□ 2.1
VPS28-212ENST00000530836 SLIT2O94813 1529 aa28.15■■■□□ 2.1
VPS28-212ENST00000530836 SMG6Q86US8 1419 aaKnown RBP28.14■■■□□ 2.09
VPS28-212ENST00000530836 BTG4Q9NY30 223 aa28.14■■■□□ 2.09
VPS28-212ENST00000530836 BCL9LQ86UU0 1499 aa28.13■■■□□ 2.09
VPS28-212ENST00000530836 ZBTB7CA1YPR0 619 aa28.13■■■□□ 2.09
VPS28-212ENST00000530836 FBLN1P23142 703 aa28.13■■■□□ 2.09
VPS28-212ENST00000530836 UNC5CLQ8IV45 518 aa28.13■■■□□ 2.09
VPS28-212ENST00000530836 NUDCQ9Y266 331 aa28.13■■■□□ 2.09
VPS28-212ENST00000530836 POLKQ9UBT6 870 aa28.12■■■□□ 2.09
VPS28-212ENST00000530836 COL14A1Q05707 1796 aaKnown RBP28.1■■■□□ 2.09
VPS28-212ENST00000530836 NGEFQ8N5V2 710 aa28.09■■■□□ 2.09
VPS28-212ENST00000530836 COL3A1P02461 1466 aaPredicted RBP28.09■■■□□ 2.09
VPS28-212ENST00000530836 QTRT2Q9H974 415 aaKnown RBP28.08■■■□□ 2.09
VPS28-212ENST00000530836 AXIN2Q9Y2T1 843 aa28.08■■■□□ 2.09
VPS28-212ENST00000530836 POTEAQ6S8J7 498 aa28.07■■■□□ 2.08
VPS28-212ENST00000530836 CDK12Q9NYV4 1490 aaPredicted RBP28.07■■■□□ 2.08
VPS28-212ENST00000530836 MAP3K19Q56UN5 1328 aa28.07■■■□□ 2.08
VPS28-212ENST00000530836 RRS1Q15050 365 aaKnown RBP28.07■■■□□ 2.08
VPS28-212ENST00000530836 TRPC5Q9UL62 973 aaPredicted RBP28.07■■■□□ 2.08
VPS28-212ENST00000530836 MAP2P11137 1827 aaKnown RBP28.06■■■□□ 2.08
VPS28-212ENST00000530836 DIAPH1O60610 1272 aaKnown RBP28.06■■■□□ 2.08
VPS28-212ENST00000530836 PDE3BQ13370 1112 aa28.04■■■□□ 2.08
VPS28-212ENST00000530836 CAMTA1Q9Y6Y1 1673 aa28.04■■■□□ 2.08
VPS28-212ENST00000530836 EVA1CP58658 441 aa28.03■■■□□ 2.08
VPS28-212ENST00000530836 IP6K1Q92551 441 aa28.03■■■□□ 2.08
VPS28-212ENST00000530836 AMPHP49418 695 aa28.03■■■□□ 2.08
VPS28-212ENST00000530836 VPS72Q15906 364 aa28.03■■■□□ 2.08
VPS28-212ENST00000530836 ATRNO75882 1429 aa28.02■■■□□ 2.08
VPS28-212ENST00000530836 PLCH1Q4KWH8 1693 aa28.02■■■□□ 2.08
VPS28-212ENST00000530836 STRN4Q9NRL3 753 aa28.02■■■□□ 2.08
VPS28-212ENST00000530836 LMO7Q8WWI1 1683 aa28.02■■■□□ 2.08
VPS28-212ENST00000530836 NWD2Q9ULI1 1742 aa28.02■■■□□ 2.08
VPS28-212ENST00000530836 PPM1GO15355 546 aaPredicted RBP28.01■■■□□ 2.07
VPS28-212ENST00000530836 PNNQ9H307 717 aaKnown RBP28.01■■■□□ 2.07
VPS28-212ENST00000530836 EMILIN1Q9Y6C2 1016 aa28.01■■■□□ 2.07
VPS28-212ENST00000530836 U2AF1L5P0DN76 240 aaPredicted RBP28■■■□□ 2.07
VPS28-212ENST00000530836 U2AF1Q01081 240 aaKnown RBP eCLIP28■■■□□ 2.07
VPS28-212ENST00000530836 RUNDC1Q96C34 613 aa28■■■□□ 2.07
VPS28-212ENST00000530836 COL18A1P39060 1754 aa28■■■□□ 2.07
VPS28-212ENST00000530836 ABCC6O95255 1503 aa28■■■□□ 2.07
VPS28-212ENST00000530836 HOXC9P31274 260 aa28■■■□□ 2.07
VPS28-212ENST00000530836 GJD4Q96KN9 370 aaPredicted RBP27.99■■■□□ 2.07
VPS28-212ENST00000530836 COL5A2P05997 1499 aaPredicted RBP27.98■■■□□ 2.07
VPS28-212ENST00000530836 RTL1A6NKG5 1358 aa27.97■■■□□ 2.07
VPS28-212ENST00000530836 KIF24Q5T7B8 1368 aa27.97■■■□□ 2.07
VPS28-212ENST00000530836 RXRBP28702 533 aa27.97■■■□□ 2.07
VPS28-212ENST00000530836 RBM6P78332 1123 aaKnown RBP27.97■■■□□ 2.07
VPS28-212ENST00000530836 NCBP3Q53F19 620 aaKnown RBP27.97■■■□□ 2.07
VPS28-212ENST00000530836 LARP1Q6PKG0 1096 aaKnown RBP27.97■■■□□ 2.07
VPS28-212ENST00000530836 CCDC9Q9Y3X0 531 aaKnown RBP27.96■■■□□ 2.07
VPS28-212ENST00000530836 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.96■■■□□ 2.07
VPS28-212ENST00000530836 U2SURPO15042 1029 aaKnown RBP27.96■■■□□ 2.07
VPS28-212ENST00000530836 CCDC146Q8IYE0 955 aa27.95■■■□□ 2.06
VPS28-212ENST00000530836 NRAPQ86VF7 1730 aa27.95■■■□□ 2.06
VPS28-212ENST00000530836 SPATA31A5Q5VU36 1347 aa27.94■■■□□ 2.06
VPS28-212ENST00000530836 SPATA31A7Q8IWB4 1347 aa27.94■■■□□ 2.06
VPS28-212ENST00000530836 FLT4P35916 1363 aa27.94■■■□□ 2.06
VPS28-212ENST00000530836 LTN1O94822 1766 aa27.94■■■□□ 2.06
VPS28-212ENST00000530836 WDR17Q8IZU2 1322 aa27.94■■■□□ 2.06
VPS28-212ENST00000530836 APAF1O14727 1248 aa27.93■■■□□ 2.06
VPS28-212ENST00000530836 HSP90AB2PQ58FF8 381 aa27.93■■■□□ 2.06
VPS28-212ENST00000530836 ANKRD24Q8TF21 1146 aa27.93■■■□□ 2.06
VPS28-212ENST00000530836 ERBB3P21860 1342 aa27.93■■■□□ 2.06
VPS28-212ENST00000530836 FCHSD2O94868 740 aa27.92■■■□□ 2.06
VPS28-212ENST00000530836 CSB-PGBD3P0DP91 1061 aa27.92■■■□□ 2.06
VPS28-212ENST00000530836 IL13P35225 146 aa27.92■■■□□ 2.06
VPS28-212ENST00000530836 SPATA31A1Q5TZJ5 1347 aa27.91■■■□□ 2.06
VPS28-212ENST00000530836 TOM1L2Q6ZVM7 507 aa27.91■■■□□ 2.06
VPS28-212ENST00000530836 LTV1Q96GA3 475 aaPredicted RBP27.9■■■□□ 2.06
VPS28-212ENST00000530836 SALL2Q9Y467 1007 aaPredicted RBP27.9■■■□□ 2.06
VPS28-212ENST00000530836 CRB1P82279 1406 aa27.88■■■□□ 2.05
VPS28-212ENST00000530836 USP35Q9P2H5 1018 aa27.88■■■□□ 2.05
VPS28-212ENST00000530836 ZNF521Q96K83 1311 aa27.87■■■□□ 2.05
VPS28-212ENST00000530836 CARD10Q9BWT7 1032 aa27.87■■■□□ 2.05
VPS28-212ENST00000530836 GTF3C3Q9Y5Q9 886 aa27.87■■■□□ 2.05
VPS28-212ENST00000530836 PEAK1Q9H792 1746 aa27.87■■■□□ 2.05
VPS28-212ENST00000530836 SENP3-EIF4A1A0A087X0R7 540 aa27.86■■■□□ 2.05
VPS28-212ENST00000530836 ONECUT3O60422 494 aaPredicted RBP27.86■■■□□ 2.05
VPS28-212ENST00000530836 NEFMP07197 916 aa27.86■■■□□ 2.05
VPS28-212ENST00000530836 TCP11L2Q8N4U5 519 aa27.86■■■□□ 2.05
VPS28-212ENST00000530836 PLEKHF1Q96S99 279 aa27.86■■■□□ 2.05
VPS28-212ENST00000530836 NLRP2Q9NX02 1062 aa27.85■■■□□ 2.05
VPS28-212ENST00000530836 THRAP3Q9Y2W1 955 aaKnown RBP27.85■■■□□ 2.05
VPS28-212ENST00000530836 MAPK8IP3Q9UPT6 1336 aa27.85■■■□□ 2.05
VPS28-212ENST00000530836 RGPD5Q99666 1765 aa27.85■■■□□ 2.05
VPS28-212ENST00000530836 CCDC27Q2M243 656 aa27.85■■■□□ 2.05
VPS28-212ENST00000530836 GLI3P10071 1580 aa27.84■■■□□ 2.05
VPS28-212ENST00000530836 FAM98CQ17RN3 349 aaKnown RBP27.83■■■□□ 2.05
VPS28-212ENST00000530836 BARGINQ6ZT62 677 aa27.83■■■□□ 2.05
VPS28-212ENST00000530836 GOLGA2Q08379 1002 aa27.82■■■□□ 2.04
VPS28-212ENST00000530836 EIF4A2Q14240 407 aaKnown RBP27.82■■■□□ 2.04
VPS28-212ENST00000530836 RSPH6AQ9H0K4 717 aa27.81■■■□□ 2.04
VPS28-212ENST00000530836 ILDR2Q71H61 639 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms