RNA–Protein interactions for RNA: ENST00000522012.5

R3HCC1-208, Transcript of R3H domain and coiled-coil containing 1, humanhuman

TSL 1 (best)

Gene R3HCC1, Length 1,500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-208ENST00000522012 IP6K1Q92551 441 aa28.44■■■□□ 2.14
R3HCC1-208ENST00000522012 PEAK1Q9H792 1746 aa28.44■■■□□ 2.14
R3HCC1-208ENST00000522012 EIF4A2Q14240 407 aaKnown RBP28.43■■■□□ 2.14
R3HCC1-208ENST00000522012 PHF23Q9BUL5 403 aaPredicted RBP28.43■■■□□ 2.14
R3HCC1-208ENST00000522012 RTL1A6NKG5 1358 aa28.43■■■□□ 2.14
R3HCC1-208ENST00000522012 SHPRHQ149N8 1683 aa28.42■■■□□ 2.14
R3HCC1-208ENST00000522012 PHLPP1O60346 1717 aa28.4■■■□□ 2.14
R3HCC1-208ENST00000522012 CCDC146Q8IYE0 955 aa28.4■■■□□ 2.14
R3HCC1-208ENST00000522012 SENP3-EIF4A1A0A087X0R7 540 aa28.39■■■□□ 2.14
R3HCC1-208ENST00000522012 LTV1Q96GA3 475 aaPredicted RBP28.39■■■□□ 2.14
R3HCC1-208ENST00000522012 BLMP54132 1417 aaPredicted RBP28.38■■■□□ 2.13
R3HCC1-208ENST00000522012 PHRF1Q9P1Y6 1649 aaKnown RBP28.38■■■□□ 2.13
R3HCC1-208ENST00000522012 KIAA0232Q92628 1395 aa28.37■■■□□ 2.13
R3HCC1-208ENST00000522012 COL16A1Q07092 1604 aaPredicted RBP28.37■■■□□ 2.13
R3HCC1-208ENST00000522012 CPDO75976 1380 aa28.35■■■□□ 2.13
R3HCC1-208ENST00000522012 CHRNA2Q15822 529 aa28.35■■■□□ 2.13
R3HCC1-208ENST00000522012 HMOX1P09601 288 aa28.34■■■□□ 2.13
R3HCC1-208ENST00000522012 RUNDC1Q96C34 613 aa28.33■■■□□ 2.13
R3HCC1-208ENST00000522012 PRDM11Q9NQV5 511 aa28.33■■■□□ 2.13
R3HCC1-208ENST00000522012 AXIN2Q9Y2T1 843 aa28.33■■■□□ 2.13
R3HCC1-208ENST00000522012 CRYBG1Q9Y4K1 1723 aa28.33■■■□□ 2.13
R3HCC1-208ENST00000522012 LTN1O94822 1766 aa28.33■■■□□ 2.13
R3HCC1-208ENST00000522012 FCHSD2O94868 740 aa28.33■■■□□ 2.13
R3HCC1-208ENST00000522012 PNNQ9H307 717 aaKnown RBP28.32■■■□□ 2.12
R3HCC1-208ENST00000522012 ANKRD24Q8TF21 1146 aa28.3■■■□□ 2.12
R3HCC1-208ENST00000522012 EYA1Q99502 592 aa28.3■■■□□ 2.12
R3HCC1-208ENST00000522012 SALL2Q9Y467 1007 aaPredicted RBP28.3■■■□□ 2.12
R3HCC1-208ENST00000522012 SULT6B1Q6IMI4 303 aa28.29■■■□□ 2.12
R3HCC1-208ENST00000522012 RSPH6AQ9H0K4 717 aa28.29■■■□□ 2.12
R3HCC1-208ENST00000522012 APAF1O14727 1248 aa28.28■■■□□ 2.12
R3HCC1-208ENST00000522012 PRKAR2BP31323 418 aa28.28■■■□□ 2.12
R3HCC1-208ENST00000522012 PLEKHF1Q96S99 279 aa28.28■■■□□ 2.12
R3HCC1-208ENST00000522012 AEBP1Q8IUX7 1158 aa28.27■■■□□ 2.12
R3HCC1-208ENST00000522012 COL22A1Q8NFW1 1626 aaPredicted RBP28.26■■■□□ 2.11
R3HCC1-208ENST00000522012 ZBED9Q6R2W3 1325 aa28.25■■■□□ 2.11
R3HCC1-208ENST00000522012 IGSF1Q8N6C5 1336 aa28.25■■■□□ 2.11
R3HCC1-208ENST00000522012 MAPK8IP3Q9UPT6 1336 aa28.25■■■□□ 2.11
R3HCC1-208ENST00000522012 NUTM2BA6NNL0 878 aaPredicted RBP28.25■■■□□ 2.11
R3HCC1-208ENST00000522012 NUTM2EB1AL46 878 aaPredicted RBP28.25■■■□□ 2.11
R3HCC1-208ENST00000522012 NEFMP07197 916 aa28.25■■■□□ 2.11
R3HCC1-208ENST00000522012 NUTM2AQ8IVF1 878 aaPredicted RBP28.25■■■□□ 2.11
R3HCC1-208ENST00000522012 JCADQ9P266 1359 aa28.24■■■□□ 2.11
R3HCC1-208ENST00000522012 FAM83GA6ND36 823 aa28.24■■■□□ 2.11
R3HCC1-208ENST00000522012 TCP11L2Q8N4U5 519 aa28.24■■■□□ 2.11
R3HCC1-208ENST00000522012 ABCA3Q99758 1704 aa28.24■■■□□ 2.11
R3HCC1-208ENST00000522012 NBPF6Q5VWK0 638 aa28.23■■■□□ 2.11
R3HCC1-208ENST00000522012 NBPF4Q96M43 638 aa28.23■■■□□ 2.11
R3HCC1-208ENST00000522012 CENPBP07199 599 aaPredicted RBP28.23■■■□□ 2.11
R3HCC1-208ENST00000522012 CSB-PGBD3P0DP91 1061 aa28.23■■■□□ 2.11
R3HCC1-208ENST00000522012 ERBB3P21860 1342 aa28.22■■■□□ 2.11
R3HCC1-208ENST00000522012 USHBP1Q8N6Y0 703 aa28.22■■■□□ 2.11
R3HCC1-208ENST00000522012 ABCC6O95255 1503 aa28.21■■■□□ 2.11
R3HCC1-208ENST00000522012 ADAMTS2O95450 1211 aa28.21■■■□□ 2.11
R3HCC1-208ENST00000522012 NEUROD2Q15784 382 aa28.2■■■□□ 2.1
R3HCC1-208ENST00000522012 RRP7AQ9Y3A4 280 aaKnown RBP28.2■■■□□ 2.1
R3HCC1-208ENST00000522012 PHACTR3Q96KR7 559 aa28.19■■■□□ 2.1
R3HCC1-208ENST00000522012 RGPD1P0DJD0 1748 aa28.19■■■□□ 2.1
R3HCC1-208ENST00000522012 COL18A1P39060 1754 aa28.18■■■□□ 2.1
R3HCC1-208ENST00000522012 NLRP2Q9NX02 1062 aa28.18■■■□□ 2.1
R3HCC1-208ENST00000522012 KDRP35968 1356 aa28.17■■■□□ 2.1
R3HCC1-208ENST00000522012 EVA1CP58658 441 aa28.16■■■□□ 2.1
R3HCC1-208ENST00000522012 NGEFQ8N5V2 710 aa28.16■■■□□ 2.1
R3HCC1-208ENST00000522012 CAMTA1Q9Y6Y1 1673 aa28.15■■■□□ 2.1
R3HCC1-208ENST00000522012 TMPOP42166 694 aaKnown RBP28.15■■■□□ 2.1
R3HCC1-208ENST00000522012 STRN4Q9NRL3 753 aa28.14■■■□□ 2.1
R3HCC1-208ENST00000522012 BTG4Q9NY30 223 aa28.14■■■□□ 2.1
R3HCC1-208ENST00000522012 SPATA31A6Q5VVP1 1343 aa28.12■■■□□ 2.09
R3HCC1-208ENST00000522012 WDR17Q8IZU2 1322 aa28.12■■■□□ 2.09
R3HCC1-208ENST00000522012 RGS17Q9UGC6 210 aaPredicted RBP28.12■■■□□ 2.09
R3HCC1-208ENST00000522012 LMO7Q8WWI1 1683 aa28.12■■■□□ 2.09
R3HCC1-208ENST00000522012 RIPK4P57078 832 aa28.11■■■□□ 2.09
R3HCC1-208ENST00000522012 NFE2L2Q16236 605 aa28.11■■■□□ 2.09
R3HCC1-208ENST00000522012 TOM1L2Q6ZVM7 507 aa28.11■■■□□ 2.09
R3HCC1-208ENST00000522012 RGPD5Q99666 1765 aa28.11■■■□□ 2.09
R3HCC1-208ENST00000522012 COL5A2P05997 1499 aaPredicted RBP28.11■■■□□ 2.09
R3HCC1-208ENST00000522012 NCBP3Q53F19 620 aaKnown RBP28.08■■■□□ 2.09
R3HCC1-208ENST00000522012 LARP1Q6PKG0 1096 aaKnown RBP28.08■■■□□ 2.08
R3HCC1-208ENST00000522012 WWC1Q8IX03 1113 aa28.08■■■□□ 2.08
R3HCC1-208ENST00000522012 COL14A1Q05707 1796 aaKnown RBP28.07■■■□□ 2.08
R3HCC1-208ENST00000522012 NCAPD2Q15021 1401 aa28.07■■■□□ 2.08
R3HCC1-208ENST00000522012 CCDC27Q2M243 656 aa28.07■■■□□ 2.08
R3HCC1-208ENST00000522012 ZNF521Q96K83 1311 aa28.06■■■□□ 2.08
R3HCC1-208ENST00000522012 PDE3BQ13370 1112 aa28.05■■■□□ 2.08
R3HCC1-208ENST00000522012 MTHFSDQ2M296 383 aaKnown RBP28.05■■■□□ 2.08
R3HCC1-208ENST00000522012 RAPGEF4Q8WZA2 1011 aa28.04■■■□□ 2.08
R3HCC1-208ENST00000522012 TRIM35Q9UPQ4 493 aa28.04■■■□□ 2.08
R3HCC1-208ENST00000522012 GAS2L2Q8NHY3 880 aa28.03■■■□□ 2.08
R3HCC1-208ENST00000522012 CARD10Q9BWT7 1032 aa28.03■■■□□ 2.08
R3HCC1-208ENST00000522012 RGPD2P0DJD1 1756 aa28.03■■■□□ 2.08
R3HCC1-208ENST00000522012 GOLGA2Q08379 1002 aa28.02■■■□□ 2.08
R3HCC1-208ENST00000522012 C8orf37Q96NL8 207 aa28.02■■■□□ 2.08
R3HCC1-208ENST00000522012 CDCA7LQ96GN5 454 aa28.02■■■□□ 2.08
R3HCC1-208ENST00000522012 NGLY1Q96IV0 654 aa28.02■■■□□ 2.08
R3HCC1-208ENST00000522012 PLEKHO1Q53GL0 409 aaPredicted RBP28.01■■■□□ 2.07
R3HCC1-208ENST00000522012 TATP17735 454 aaPredicted RBP28■■■□□ 2.07
R3HCC1-208ENST00000522012 LMOD3Q0VAK6 560 aa28■■■□□ 2.07
R3HCC1-208ENST00000522012 MEX3CQ5U5Q3 659 aaKnown RBP28■■■□□ 2.07
R3HCC1-208ENST00000522012 CRB1P82279 1406 aa27.99■■■□□ 2.07
R3HCC1-208ENST00000522012 WDR63Q8IWG1 891 aa27.99■■■□□ 2.07
R3HCC1-208ENST00000522012 LRP6O75581 1613 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms