RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 CARD14Q9BXL6 1004 aa13.12□□□□□ -0.31
CLK4-209ENST00000521621 BRWD3Q6RI45 1802 aa13.12□□□□□ -0.31
CLK4-209ENST00000521621 FYB1O15117 783 aa13.11□□□□□ -0.31
CLK4-209ENST00000521621 PLEKHG2Q9H7P9 1386 aa13.11□□□□□ -0.31
CLK4-209ENST00000521621 SMG6Q86US8 1419 aaKnown RBP13.11□□□□□ -0.31
CLK4-209ENST00000521621 COG3Q96JB2 828 aa13.1□□□□□ -0.31
CLK4-209ENST00000521621 KIF7Q2M1P5 1343 aa13.1□□□□□ -0.31
CLK4-209ENST00000521621 CCDC7Q96M83 1385 aa13.09□□□□□ -0.31
CLK4-209ENST00000521621 WDR17Q8IZU2 1322 aa13.09□□□□□ -0.31
CLK4-209ENST00000521621 NUTM2GQ5VZR2 741 aa13.09□□□□□ -0.31
CLK4-209ENST00000521621 C11orf95C9JLR9 678 aaPredicted RBP13.09□□□□□ -0.31
CLK4-209ENST00000521621 ZC3H6P61129 1189 aaKnown RBP13.09□□□□□ -0.31
CLK4-209ENST00000521621 DISP2A7MBM2 1401 aa13.09□□□□□ -0.31
CLK4-209ENST00000521621 BCL9O00512 1426 aa13.09□□□□□ -0.31
CLK4-209ENST00000521621 ZEB1P37275 1124 aaPredicted RBP13.08□□□□□ -0.32
CLK4-209ENST00000521621 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLK4-209ENST00000521621 CDCA7Q9BWT1 371 aaPredicted RBP13.08□□□□□ -0.32
CLK4-209ENST00000521621 LRRC37A3O60309 1634 aa13.08□□□□□ -0.32
CLK4-209ENST00000521621 PEAK1Q9H792 1746 aa13.07□□□□□ -0.32
CLK4-209ENST00000521621 NCAPD2Q15021 1401 aa13.07□□□□□ -0.32
CLK4-209ENST00000521621 IP6K1Q92551 441 aa13.07□□□□□ -0.32
CLK4-209ENST00000521621 CCDC125Q86Z20 511 aa13.06□□□□□ -0.32
CLK4-209ENST00000521621 CARD10Q9BWT7 1032 aa13.06□□□□□ -0.32
CLK4-209ENST00000521621 RGPD1P0DJD0 1748 aa13.06□□□□□ -0.32
CLK4-209ENST00000521621 ZRANB1Q9UGI0 708 aa13.05□□□□□ -0.32
CLK4-209ENST00000521621 CHRNA2Q15822 529 aa13.05□□□□□ -0.32
CLK4-209ENST00000521621 TCP11L2Q8N4U5 519 aa13.05□□□□□ -0.32
CLK4-209ENST00000521621 ERBB3P21860 1342 aa13.05□□□□□ -0.32
CLK4-209ENST00000521621 INSRP06213 1382 aa13.05□□□□□ -0.32
CLK4-209ENST00000521621 WASHC2AQ641Q2 1341 aa13.04□□□□□ -0.32
CLK4-209ENST00000521621 RGPD3A6NKT7 1758 aaPredicted RBP13.04□□□□□ -0.32
CLK4-209ENST00000521621 RGPD4Q7Z3J3 1758 aa13.04□□□□□ -0.32
CLK4-209ENST00000521621 PANK3Q9H999 370 aa13.04□□□□□ -0.32
CLK4-209ENST00000521621 AXIN2Q9Y2T1 843 aa13.04□□□□□ -0.32
CLK4-209ENST00000521621 PER1O15534 1290 aaPredicted RBP13.03□□□□□ -0.32
CLK4-209ENST00000521621 EVA1CP58658 441 aa13.03□□□□□ -0.32
CLK4-209ENST00000521621 FLT4P35916 1363 aa13.03□□□□□ -0.32
CLK4-209ENST00000521621 SEPT12Q8IYM1 358 aa13.03□□□□□ -0.32
CLK4-209ENST00000521621 MAP2P11137 1827 aaKnown RBP13.03□□□□□ -0.32
CLK4-209ENST00000521621 LARP1Q6PKG0 1096 aaKnown RBP13.03□□□□□ -0.32
CLK4-209ENST00000521621 MAP3K19Q56UN5 1328 aa13.02□□□□□ -0.32
CLK4-209ENST00000521621 HOXC9P31274 260 aa13.02□□□□□ -0.33
CLK4-209ENST00000521621 TNS1Q9HBL0 1735 aaKnown RBP13.01□□□□□ -0.33
CLK4-209ENST00000521621 AMER1Q5JTC6 1135 aaPredicted RBP13.01□□□□□ -0.33
CLK4-209ENST00000521621 UPF1Q92900 1129 aaKnown RBP eCLIP13□□□□□ -0.33
CLK4-209ENST00000521621 GGNBP2Q9H3C7 697 aa13□□□□□ -0.33
CLK4-209ENST00000521621 TNS2Q63HR2 1409 aa13□□□□□ -0.33
CLK4-209ENST00000521621 KRT27Q7Z3Y8 459 aa12.99□□□□□ -0.33
CLK4-209ENST00000521621 PKD1L3Q7Z443 1732 aa12.99□□□□□ -0.33
CLK4-209ENST00000521621 KNSTRNQ9Y448 316 aa12.99□□□□□ -0.33
CLK4-209ENST00000521621 ANKRD24Q8TF21 1146 aa12.98□□□□□ -0.33
CLK4-209ENST00000521621 STRN4Q9NRL3 753 aa12.98□□□□□ -0.33
CLK4-209ENST00000521621 SHANK3Q9BYB0 1731 aa12.98□□□□□ -0.33
CLK4-209ENST00000521621 FAM98CQ17RN3 349 aaKnown RBP12.98□□□□□ -0.33
CLK4-209ENST00000521621 SBF2Q86WG5 1849 aa12.98□□□□□ -0.33
CLK4-209ENST00000521621 CCDC9Q9Y3X0 531 aaKnown RBP12.98□□□□□ -0.33
CLK4-209ENST00000521621 TOM1L2Q6ZVM7 507 aa12.97□□□□□ -0.33
CLK4-209ENST00000521621 RGPD2P0DJD1 1756 aa12.97□□□□□ -0.33
CLK4-209ENST00000521621 NHSQ6T4R5 1651 aa12.96□□□□□ -0.33
CLK4-209ENST00000521621 OVOS2A0A0G2JMS6 1433 aa12.96□□□□□ -0.34
CLK4-209ENST00000521621 AMPHP49418 695 aa12.96□□□□□ -0.34
CLK4-209ENST00000521621 POLKQ9UBT6 870 aa12.96□□□□□ -0.34
CLK4-209ENST00000521621 PLEKHG5O94827 1062 aa12.95□□□□□ -0.34
CLK4-209ENST00000521621 FAM196AQ6ZSG2 479 aa12.95□□□□□ -0.34
CLK4-209ENST00000521621 PARD3Q8TEW0 1356 aa12.95□□□□□ -0.34
CLK4-209ENST00000521621 RREB1Q92766 1687 aa12.94□□□□□ -0.34
CLK4-209ENST00000521621 IL2RBP14784 551 aa12.93□□□□□ -0.34
CLK4-209ENST00000521621 CSB-PGBD3P0DP91 1061 aa12.92□□□□□ -0.34
CLK4-209ENST00000521621 MORC1Q86VD1 984 aa12.92□□□□□ -0.34
CLK4-209ENST00000521621 COL3A1P02461 1466 aaPredicted RBP12.92□□□□□ -0.34
CLK4-209ENST00000521621 RRS1Q15050 365 aaKnown RBP12.92□□□□□ -0.34
CLK4-209ENST00000521621 DDB1Q16531 1140 aa12.92□□□□□ -0.34
CLK4-209ENST00000521621 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.91□□□□□ -0.347e-7■■■■□ 25.1
CLK4-209ENST00000521621 SOX12O15370 315 aa12.91□□□□□ -0.34
CLK4-209ENST00000521621 PDE3BQ13370 1112 aa12.91□□□□□ -0.34
CLK4-209ENST00000521621 POLR3GLQ9BT43 218 aa12.9□□□□□ -0.34
CLK4-209ENST00000521621 EMILIN1Q9Y6C2 1016 aa12.9□□□□□ -0.34
CLK4-209ENST00000521621 ZBTB7CA1YPR0 619 aa12.9□□□□□ -0.34
CLK4-209ENST00000521621 HSP90AB2PQ58FF8 381 aa12.9□□□□□ -0.34
CLK4-209ENST00000521621 NLRP2Q9NX02 1062 aa12.9□□□□□ -0.34
CLK4-209ENST00000521621 IGSF1Q8N6C5 1336 aa12.9□□□□□ -0.34
CLK4-209ENST00000521621 KDRP35968 1356 aa12.9□□□□□ -0.34
CLK4-209ENST00000521621 MEGF6O75095 1541 aa12.9□□□□□ -0.35
CLK4-209ENST00000521621 EXOC5O00471 708 aa12.89□□□□□ -0.35
CLK4-209ENST00000521621 NBPF6Q5VWK0 638 aa12.88□□□□□ -0.35
CLK4-209ENST00000521621 NBPF4Q96M43 638 aa12.88□□□□□ -0.35
CLK4-209ENST00000521621 FBLN1P23142 703 aa12.87□□□□□ -0.35
CLK4-209ENST00000521621 MARCH10Q8NA82 808 aaPredicted RBP12.87□□□□□ -0.35
CLK4-209ENST00000521621 EIF4A2Q14240 407 aaKnown RBP12.86□□□□□ -0.35
CLK4-209ENST00000521621 NUP188Q5SRE5 1749 aa12.86□□□□□ -0.35
CLK4-209ENST00000521621 BCL11BQ9C0K0 894 aaPredicted RBP12.86□□□□□ -0.35
CLK4-209ENST00000521621 USP35Q9P2H5 1018 aa12.86□□□□□ -0.35
CLK4-209ENST00000521621 ADAMTS7Q9UKP4 1686 aa12.86□□□□□ -0.35
CLK4-209ENST00000521621 IL13P35225 146 aa12.85□□□□□ -0.35
CLK4-209ENST00000521621 NKX1-1Q15270 411 aaPredicted RBP12.85□□□□□ -0.35
CLK4-209ENST00000521621 DOT1LQ8TEK3 1739 aa12.85□□□□□ -0.35
CLK4-209ENST00000521621 ZNF831Q5JPB2 1677 aa12.85□□□□□ -0.35
CLK4-209ENST00000521621 PLSCR1O15162 318 aa12.85□□□□□ -0.35
CLK4-209ENST00000521621 TATP17735 454 aaPredicted RBP12.84□□□□□ -0.35
CLK4-209ENST00000521621 EYA1Q99502 592 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms