RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ZNF526Q8TF50 670 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 DDX19BQ9UMR2 479 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 BICRAQ9NZM4 1560 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 SNAPC4Q5SXM2 1469 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 KDM4AO75164 1064 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 SAFB2Q14151 953 aaKnown RBP eCLIP8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 FBXO38Q6PIJ6 1188 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 CCDC112Q8NEF3 446 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 USP26Q9BXU7 913 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 SLC12A5Q9H2X9 1139 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 EXOC6BQ9Y2D4 811 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 SPAG9O60271 1321 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 RBM6P78332 1123 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 HDAC1Q13547 482 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 BMP2KLQ5H9B9 411 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 TAF3Q5VWG9 929 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 CDC45O75419 566 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 CPA1P15085 419 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 ST5P78524 1137 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 KRT222Q8N1A0 295 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 DRC1Q96MC2 740 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 PALD1Q9ULE6 856 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 HDAC5Q9UQL6 1122 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 RALGAPBQ86X10 1494 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 MBD5Q9P267 1494 aa8.75□□□□□ -1.01
LIMCH1-207ENST00000508466 SYT10Q6XYQ8 523 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 RUNDC1Q96C34 613 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 FEZ1Q99689 392 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 ST18O60284 1047 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 RABEP1Q15276 862 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 NOL10Q9BSC4 688 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 KRBA2Q6ZNG9 492 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 FAM212AQ96EL1 285 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 SPTLC3Q9NUV7 552 aa8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 IBTKQ9P2D0 1353 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-207ENST00000508466 TSPY4P0CV99 314 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 TSPY10P0CW01 314 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 IBSPP21815 317 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 ERCC6LQ2NKX8 1250 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 FERMT3Q86UX7 667 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 SEC31AO94979 1220 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 MAP4K4O95819 1239 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 SDSP20132 328 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 FILIP1Q7Z7B0 1213 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 TEX2Q8IWB9 1127 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 NFATC2IPQ8NCF5 419 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 TRIM5Q9C035 493 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 PLEKHA4Q9H4M7 779 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 ZNF446Q9NWS9 450 aa8.73□□□□□ -1.01
LIMCH1-207ENST00000508466 CTIFO43310 598 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 GTF2A1P52655 376 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 KRT24Q2M2I5 525 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 TSPYL6Q8N831 410 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 CCDC34Q96HJ3 373 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 PLEKHH2Q8IVE3 1493 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 CLEC17AQ6ZS10 378 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 PLEKHM2Q8IWE5 1019 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 CALCOCO1Q9P1Z2 691 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 GABPB1Q06547 395 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 PTPN21Q16825 1174 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 ERCC4Q92889 916 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 MORC2Q9Y6X9 1032 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 UGGT2Q9NYU1 1516 aa8.72□□□□□ -1.01
LIMCH1-207ENST00000508466 ANKRD50Q9ULJ7 1429 aa8.71□□□□□ -1.01
LIMCH1-207ENST00000508466 MBD3O95983 291 aa8.71□□□□□ -1.01
LIMCH1-207ENST00000508466 NUTM2DQ5VT03 806 aaPredicted RBP8.71□□□□□ -1.01
LIMCH1-207ENST00000508466 RILPL2Q969X0 211 aa8.71□□□□□ -1.01
LIMCH1-207ENST00000508466 SRCIN1Q9C0H9 1055 aa8.71□□□□□ -1.01
LIMCH1-207ENST00000508466 ANO2Q9NQ90 1003 aa8.71□□□□□ -1.01
LIMCH1-207ENST00000508466 TAOK2Q9UL54 1235 aa8.71□□□□□ -1.01
LIMCH1-207ENST00000508466 PPFIA3O75145 1194 aa8.71□□□□□ -1.02
LIMCH1-207ENST00000508466 FAM177A1Q8N128 213 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-207ENST00000508466 CACTINQ8WUQ7 758 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-207ENST00000508466 GPRASP1Q5JY77 1395 aa8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 CCDC144BQ3MJ40 725 aa8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 CEP135Q66GS9 1140 aa8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 CCDC144CPQ8IYA2 1237 aa8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 SRRTQ9BXP5 876 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 POLR1AO95602 1720 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 SUPT6HQ7KZ85 1726 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 PATL2C9JE40 543 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 DNAJC21Q5F1R6 531 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 CNPY4Q8N129 248 aa8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 CCDC191Q8NCU4 936 aa8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 SYAP1Q96A49 352 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 TFIP11Q9UBB9 837 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-207ENST00000508466 TULP2O00295 520 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 DNM1Q05193 864 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 CDCA8Q53HL2 280 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 CFAP70Q5T0N1 1121 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 PRG4Q92954 1404 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 DHX16O60231 1041 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 BRD1O95696 1058 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 TTLL5Q6EMB2 1281 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 SMARCE1Q969G3 411 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 ZBTB7BO15156 539 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 CHGAP10645 457 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 FOXR1Q6PIV2 292 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 ZNF428Q96B54 188 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 CWC22Q9HCG8 908 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms