RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 LINC00528Q8N1L1 170 aa10.17□□□□□ -0.78
SMC4-227ENST00000497984 BCANQ96GW7 911 aa10.17□□□□□ -0.78
SMC4-227ENST00000497984 CCDC116Q8IYX3 515 aa10.16□□□□□ -0.78
SMC4-227ENST00000497984 OCSTAMPQ9BR26 566 aa10.15□□□□□ -0.78
SMC4-227ENST00000497984 ARHGAP9Q9BRR9 750 aa10.15□□□□□ -0.78
SMC4-227ENST00000497984 EMILIN1Q9Y6C2 1016 aa10.15□□□□□ -0.78
SMC4-227ENST00000497984 ZC3H4Q9UPT8 1303 aaKnown RBP10.14□□□□□ -0.79
SMC4-227ENST00000497984 BMP2P12643 396 aa10.14□□□□□ -0.79
SMC4-227ENST00000497984 SOS2Q07890 1332 aaPredicted RBP10.13□□□□□ -0.79
SMC4-227ENST00000497984 MAN1A2O60476 641 aa10.13□□□□□ -0.79
SMC4-227ENST00000497984 AP1G2O75843 785 aa10.12□□□□□ -0.79
SMC4-227ENST00000497984 UPP2O95045 317 aa10.12□□□□□ -0.79
SMC4-227ENST00000497984 VSIG8P0DPA2 414 aa10.12□□□□□ -0.79
SMC4-227ENST00000497984 PPP1R26Q5T8A7 1209 aaPredicted RBP10.12□□□□□ -0.79
SMC4-227ENST00000497984 EPS8L1Q8TE68 723 aa10.12□□□□□ -0.79
SMC4-227ENST00000497984 TSEN34Q9BSV6 310 aaKnown RBP10.11□□□□□ -0.79
SMC4-227ENST00000497984 HMX1Q9NP08 348 aaPredicted RBP10.11□□□□□ -0.79
SMC4-227ENST00000497984 DNMT3LQ9UJW3 386 aa10.11□□□□□ -0.79
SMC4-227ENST00000497984 SLC10A4Q96EP9 437 aa10.1□□□□□ -0.79
SMC4-227ENST00000497984 KCTD15Q96SI1 283 aaPredicted RBP10.1□□□□□ -0.79
SMC4-227ENST00000497984 CDV3Q9UKY7 258 aaKnown RBP10.1□□□□□ -0.79
SMC4-227ENST00000497984 USP17L8P0C7I0 530 aa10.09□□□□□ -0.79
SMC4-227ENST00000497984 CBLBQ13191 982 aa10.09□□□□□ -0.79
SMC4-227ENST00000497984 Q6ZVU0 165 aa10.09□□□□□ -0.79
SMC4-227ENST00000497984 ZBTB33Q86T24 672 aa10.09□□□□□ -0.79
SMC4-227ENST00000497984 ZSCAN1Q8NBB4 408 aa10.09□□□□□ -0.79
SMC4-227ENST00000497984 ATP1B4Q9UN42 357 aaPredicted RBP10.09□□□□□ -0.79
SMC4-227ENST00000497984 GPSM3Q9Y4H4 160 aa10.09□□□□□ -0.79
SMC4-227ENST00000497984 PPFIA3O75145 1194 aa10.08□□□□□ -0.8
SMC4-227ENST00000497984 PTK2Q05397 1052 aa10.08□□□□□ -0.8
SMC4-227ENST00000497984 INTS6LQ5JSJ4 861 aaKnown RBP10.08□□□□□ -0.8
SMC4-227ENST00000497984 PGPEP1Q9NXJ5 209 aa10.08□□□□□ -0.8
SMC4-227ENST00000497984 ADAM32Q8TC27 787 aa10.07□□□□□ -0.8
SMC4-227ENST00000497984 RFC5P40937 340 aa10.06□□□□□ -0.8
SMC4-227ENST00000497984 SPINT1O43278 529 aa10.05□□□□□ -0.8
SMC4-227ENST00000497984 TTLL8A6PVC2 850 aa10.04□□□□□ -0.8
SMC4-227ENST00000497984 DHX9Q08211 1270 aaKnown RBP10.04□□□□□ -0.8
SMC4-227ENST00000497984 GOPCQ9HD26 462 aa10.04□□□□□ -0.8
SMC4-227ENST00000497984 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.03□□□□□ -0.82e-41■■■■■ 207.1
SMC4-227ENST00000497984 FAM181BA6NEQ2 426 aa10.02□□□□□ -0.81
SMC4-227ENST00000497984 TRIM34Q9BYJ4 488 aa10.02□□□□□ -0.81
SMC4-227ENST00000497984 AGBL1Q96MI9 1066 aa10.01□□□□□ -0.81
SMC4-227ENST00000497984 FIGNL2A6NMB9 653 aa10□□□□□ -0.81
SMC4-227ENST00000497984 SLC24A1O60721 1099 aa10□□□□□ -0.81
SMC4-227ENST00000497984 PTSQ03393 145 aa10□□□□□ -0.81
SMC4-227ENST00000497984 NBPF20Q3BBV1 942 aa10□□□□□ -0.81
SMC4-227ENST00000497984 PNMA1Q8ND90 353 aa10□□□□□ -0.81
SMC4-227ENST00000497984 TMPRSS4Q9NRS4 437 aa10□□□□□ -0.81
SMC4-227ENST00000497984 ESPNB1AK53 854 aa9.98□□□□□ -0.81
SMC4-227ENST00000497984 PCMTD1Q96MG8 357 aaPredicted RBP9.98□□□□□ -0.81
SMC4-227ENST00000497984 LILRA1O75019 489 aa9.97□□□□□ -0.81
SMC4-227ENST00000497984 CTSOP43234 321 aaPredicted RBP9.97□□□□□ -0.81
SMC4-227ENST00000497984 RELBQ01201 579 aa9.97□□□□□ -0.81
SMC4-227ENST00000497984 TMEM259Q4ZIN3 620 aa9.97□□□□□ -0.81
SMC4-227ENST00000497984 DZIP3Q86Y13 1208 aaKnown RBP9.97□□□□□ -0.81
SMC4-227ENST00000497984 GPR161Q8N6U8 529 aaKnown RBP9.97□□□□□ -0.81
SMC4-227ENST00000497984 ZNF784Q8NCA9 323 aaPredicted RBP9.97□□□□□ -0.81
SMC4-227ENST00000497984 ERVH48-1M5A8F1 160 aa9.96□□□□□ -0.82
SMC4-227ENST00000497984 INSM2Q96T92 566 aaPredicted RBP9.96□□□□□ -0.82
SMC4-227ENST00000497984 SLC35F4A4IF30 521 aa9.95□□□□□ -0.82
SMC4-227ENST00000497984 ADD1P35611 737 aaKnown RBP9.95□□□□□ -0.82
SMC4-227ENST00000497984 RAB15P59190 212 aa9.95□□□□□ -0.82
SMC4-227ENST00000497984 KRT76Q01546 638 aa9.95□□□□□ -0.82
SMC4-227ENST00000497984 NEUROD2Q15784 382 aa9.95□□□□□ -0.82
SMC4-227ENST00000497984 CCDC155Q8N6L0 562 aa9.95□□□□□ -0.82
SMC4-227ENST00000497984 KDF1Q8NAX2 398 aaPredicted RBP9.95□□□□□ -0.82
SMC4-227ENST00000497984 GJD4Q96KN9 370 aaPredicted RBP9.95□□□□□ -0.82
SMC4-227ENST00000497984 ADH1AP07327 375 aa9.94□□□□□ -0.82
SMC4-227ENST00000497984 IL27Q8NEV9 243 aa9.94□□□□□ -0.82
SMC4-227ENST00000497984 NANOS1Q8WY41 292 aaKnown RBP9.94□□□□□ -0.82
SMC4-227ENST00000497984 RNF217Q8TC41 542 aa9.93□□□□□ -0.82
SMC4-227ENST00000497984 ZNF395Q9H8N7 513 aaPredicted RBP9.93□□□□□ -0.82
SMC4-227ENST00000497984 ZBBXA8MT70 800 aa9.91□□□□□ -0.82
SMC4-227ENST00000497984 FOXD4L5Q5VV16 416 aaPredicted RBP9.91□□□□□ -0.82
SMC4-227ENST00000497984 SEPT12Q8IYM1 358 aa9.91□□□□□ -0.82
SMC4-227ENST00000497984 POLMQ9NP87 494 aaPredicted RBP9.91□□□□□ -0.82
SMC4-227ENST00000497984 FBXO45P0C2W1 286 aa9.9□□□□□ -0.82
SMC4-227ENST00000497984 PTGIRP43119 386 aa9.9□□□□□ -0.82
SMC4-227ENST00000497984 SENP3-EIF4A1A0A087X0R7 540 aa9.89□□□□□ -0.83
SMC4-227ENST00000497984 ITGA6P23229 1130 aa9.89□□□□□ -0.83
SMC4-227ENST00000497984 BRPF1P55201 1214 aaPredicted RBP9.89□□□□□ -0.83
SMC4-227ENST00000497984 CNTNAP3BQ96NU0 1288 aa9.89□□□□□ -0.83
SMC4-227ENST00000497984 CNTNAP3Q9BZ76 1288 aa9.89□□□□□ -0.83
SMC4-227ENST00000497984 GIGYF1O75420 1035 aaPredicted RBP9.88□□□□□ -0.83
SMC4-227ENST00000497984 COL25A1Q9BXS0 654 aaPredicted RBP9.88□□□□□ -0.83
SMC4-227ENST00000497984 CYLDQ9NQC7 956 aa9.88□□□□□ -0.83
SMC4-227ENST00000497984 GPR37L1O60883 481 aa9.87□□□□□ -0.83
SMC4-227ENST00000497984 RNFT1Q5M7Z0 435 aa9.87□□□□□ -0.83
SMC4-227ENST00000497984 PCDHB9Q9Y5E1 797 aa9.87□□□□□ -0.83
SMC4-227ENST00000497984 VWA5B2Q8N398 1253 aa9.86□□□□□ -0.83
SMC4-227ENST00000497984 SOCS7O14512 581 aa9.83□□□□□ -0.84
SMC4-227ENST00000497984 KCTD17Q8N5Z5 321 aa9.83□□□□□ -0.84
SMC4-227ENST00000497984 BANK1Q8NDB2 785 aa9.83□□□□□ -0.84
SMC4-227ENST00000497984 CDC14CA4D256 554 aa9.82□□□□□ -0.84
SMC4-227ENST00000497984 RNF144AP50876 292 aaPredicted RBP9.82□□□□□ -0.84
SMC4-227ENST00000497984 ERVK-9P63128 1117 aa9.82□□□□□ -0.84
SMC4-227ENST00000497984 NR1H3Q13133 447 aa9.82□□□□□ -0.84
SMC4-227ENST00000497984 SV2AQ7L0J3 742 aa9.82□□□□□ -0.84
SMC4-227ENST00000497984 LYSMD3Q7Z3D4 306 aa9.82□□□□□ -0.84
SMC4-227ENST00000497984 MTMR14Q8NCE2 650 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms