RNA–Protein interactions for RNA: ENST00000493039.5

CSTF1-206, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 5

Gene CSTF1, Length 2,234 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-206ENST00000493039 INSRP06213 1382 aa12.63□□□□□ -0.39
CSTF1-206ENST00000493039 HOXC9P31274 260 aa12.63□□□□□ -0.39
CSTF1-206ENST00000493039 MAP2P11137 1827 aaKnown RBP12.63□□□□□ -0.39
CSTF1-206ENST00000493039 ABCA3Q99758 1704 aa12.63□□□□□ -0.39
CSTF1-206ENST00000493039 NUTM2BA6NNL0 878 aaPredicted RBP12.62□□□□□ -0.39
CSTF1-206ENST00000493039 NUTM2EB1AL46 878 aaPredicted RBP12.62□□□□□ -0.39
CSTF1-206ENST00000493039 NUTM2AQ8IVF1 878 aaPredicted RBP12.62□□□□□ -0.39
CSTF1-206ENST00000493039 IP6K1Q92551 441 aa12.62□□□□□ -0.39
CSTF1-206ENST00000493039 SHPRHQ149N8 1683 aa12.62□□□□□ -0.39
CSTF1-206ENST00000493039 CCER2I3L3R5 266 aa12.62□□□□□ -0.39
CSTF1-206ENST00000493039 ADAMTS2O95450 1211 aa12.61□□□□□ -0.39
CSTF1-206ENST00000493039 AMPHP49418 695 aa12.61□□□□□ -0.39
CSTF1-206ENST00000493039 LRP6O75581 1613 aa12.61□□□□□ -0.39
CSTF1-206ENST00000493039 COL3A1P02461 1466 aaPredicted RBP12.61□□□□□ -0.39
CSTF1-206ENST00000493039 SPATA31A6Q5VVP1 1343 aa12.61□□□□□ -0.39
CSTF1-206ENST00000493039 ZBTB7CA1YPR0 619 aa12.61□□□□□ -0.39
CSTF1-206ENST00000493039 HAP1P54257 671 aaPredicted RBP12.61□□□□□ -0.39
CSTF1-206ENST00000493039 PRDM11Q9NQV5 511 aa12.61□□□□□ -0.39
CSTF1-206ENST00000493039 FLT4P35916 1363 aa12.6□□□□□ -0.39
CSTF1-206ENST00000493039 KIF24Q5T7B8 1368 aa12.6□□□□□ -0.39
CSTF1-206ENST00000493039 CDK12Q9NYV4 1490 aaPredicted RBP12.6□□□□□ -0.39
CSTF1-206ENST00000493039 COL18A1P39060 1754 aa12.6□□□□□ -0.39
CSTF1-206ENST00000493039 IL13P35225 146 aa12.6□□□□□ -0.39
CSTF1-206ENST00000493039 PNISRQ8TF01 805 aaKnown RBP12.6□□□□□ -0.39
CSTF1-206ENST00000493039 MRS2Q9HD23 443 aa12.6□□□□□ -0.39
CSTF1-206ENST00000493039 EIF4A2Q14240 407 aaKnown RBP12.59□□□□□ -0.39
CSTF1-206ENST00000493039 CAMTA1Q9Y6Y1 1673 aa12.59□□□□□ -0.39
CSTF1-206ENST00000493039 RTL1A6NKG5 1358 aa12.59□□□□□ -0.39
CSTF1-206ENST00000493039 LTN1O94822 1766 aa12.58□□□□□ -0.4
CSTF1-206ENST00000493039 DIAPH1O60610 1272 aaKnown RBP12.57□□□□□ -0.4
CSTF1-206ENST00000493039 LMO7Q8WWI1 1683 aa12.57□□□□□ -0.4
CSTF1-206ENST00000493039 ERBB3P21860 1342 aa12.56□□□□□ -0.4
CSTF1-206ENST00000493039 LTV1Q96GA3 475 aaPredicted RBP12.56□□□□□ -0.4
CSTF1-206ENST00000493039 CFAP53Q96M91 514 aa12.56□□□□□ -0.4
CSTF1-206ENST00000493039 BTG4Q9NY30 223 aa12.56□□□□□ -0.4
CSTF1-206ENST00000493039 BLMP54132 1417 aaPredicted RBP12.56□□□□□ -0.4
CSTF1-206ENST00000493039 ILDR1Q86SU0 546 aaPredicted RBP12.56□□□□□ -0.4
CSTF1-206ENST00000493039 ANKRD24Q8TF21 1146 aa12.56□□□□□ -0.4
CSTF1-206ENST00000493039 TAOK2Q9UL54 1235 aa12.56□□□□□ -0.4
CSTF1-206ENST00000493039 NBPF6Q5VWK0 638 aa12.55□□□□□ -0.4
CSTF1-206ENST00000493039 NBPF4Q96M43 638 aa12.55□□□□□ -0.4
CSTF1-206ENST00000493039 EYA1Q99502 592 aa12.55□□□□□ -0.4
CSTF1-206ENST00000493039 FNBP4Q8N3X1 1017 aaPredicted RBP12.54□□□□□ -0.4
CSTF1-206ENST00000493039 C8orf37Q96NL8 207 aa12.54□□□□□ -0.4
CSTF1-206ENST00000493039 ADAMTS8Q9UP79 889 aa12.54□□□□□ -0.4
CSTF1-206ENST00000493039 SLIT2O94813 1529 aa12.54□□□□□ -0.4
CSTF1-206ENST00000493039 COL5A2P05997 1499 aaPredicted RBP12.54□□□□□ -0.4
CSTF1-206ENST00000493039 KCNA4P22459 653 aa12.54□□□□□ -0.4
CSTF1-206ENST00000493039 ABCC6O95255 1503 aa12.54□□□□□ -0.4
CSTF1-206ENST00000493039 RGPD5Q99666 1765 aa12.53□□□□□ -0.4
CSTF1-206ENST00000493039 LARP1Q6PKG0 1096 aaKnown RBP12.53□□□□□ -0.4
CSTF1-206ENST00000493039 BCL9LQ86UU0 1499 aa12.53□□□□□ -0.4
CSTF1-206ENST00000493039 AEBP1Q8IUX7 1158 aa12.53□□□□□ -0.4
CSTF1-206ENST00000493039 NGLY1Q96IV0 654 aa12.53□□□□□ -0.4
CSTF1-206ENST00000493039 IGSF1Q8N6C5 1336 aa12.52□□□□□ -0.4
CSTF1-206ENST00000493039 COL14A1Q05707 1796 aaKnown RBP12.52□□□□□ -0.4
CSTF1-206ENST00000493039 U2SURPO15042 1029 aaKnown RBP12.52□□□□□ -0.41
CSTF1-206ENST00000493039 PDIA4P13667 645 aaKnown RBP12.52□□□□□ -0.41
CSTF1-206ENST00000493039 FAM9BQ8IZU0 186 aa12.52□□□□□ -0.41
CSTF1-206ENST00000493039 WDR17Q8IZU2 1322 aa12.52□□□□□ -0.41
CSTF1-206ENST00000493039 USHBP1Q8N6Y0 703 aa12.52□□□□□ -0.41
CSTF1-206ENST00000493039 STRN4Q9NRL3 753 aa12.52□□□□□ -0.41
CSTF1-206ENST00000493039 U2AF1L5P0DN76 240 aaPredicted RBP12.51□□□□□ -0.41
CSTF1-206ENST00000493039 U2AF1Q01081 240 aaKnown RBP eCLIP12.51□□□□□ -0.41
CSTF1-206ENST00000493039 HMOX1P09601 288 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 NUDCQ9Y266 331 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 NCAPD2Q15021 1401 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 RGPD1P0DJD0 1748 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 SULT6B1Q6IMI4 303 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 UNC5CLQ8IV45 518 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 RSPH6AQ9H0K4 717 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 KDRP35968 1356 aa12.5□□□□□ -0.41
CSTF1-206ENST00000493039 EVA1CP58658 441 aa12.49□□□□□ -0.41
CSTF1-206ENST00000493039 MEX3CQ5U5Q3 659 aaKnown RBP12.49□□□□□ -0.41
CSTF1-206ENST00000493039 PLEKHF1Q96S99 279 aa12.49□□□□□ -0.41
CSTF1-206ENST00000493039 NLRP2Q9NX02 1062 aa12.49□□□□□ -0.41
CSTF1-206ENST00000493039 AFF2P51816 1311 aa12.49□□□□□ -0.41
CSTF1-206ENST00000493039 CSB-PGBD3P0DP91 1061 aa12.49□□□□□ -0.41
CSTF1-206ENST00000493039 WDR43Q15061 677 aaKnown RBP eCLIP12.49□□□□□ -0.41
CSTF1-206ENST00000493039 PLCH1Q4KWH8 1693 aa12.48□□□□□ -0.41
CSTF1-206ENST00000493039 TOM1L2Q6ZVM7 507 aa12.48□□□□□ -0.41
CSTF1-206ENST00000493039 CARD10Q9BWT7 1032 aa12.48□□□□□ -0.41
CSTF1-206ENST00000493039 USP21Q9UK80 565 aa12.48□□□□□ -0.41
CSTF1-206ENST00000493039 RGPD2P0DJD1 1756 aa12.48□□□□□ -0.41
CSTF1-206ENST00000493039 FCHSD2O94868 740 aa12.47□□□□□ -0.41
CSTF1-206ENST00000493039 PHACTR3Q96KR7 559 aa12.47□□□□□ -0.41
CSTF1-206ENST00000493039 CRB1P82279 1406 aa12.47□□□□□ -0.41
CSTF1-206ENST00000493039 NRAPQ86VF7 1730 aa12.47□□□□□ -0.41
CSTF1-206ENST00000493039 CCDC146Q8IYE0 955 aa12.47□□□□□ -0.41
CSTF1-206ENST00000493039 USP35Q9P2H5 1018 aa12.46□□□□□ -0.41
CSTF1-206ENST00000493039 RGS17Q9UGC6 210 aaPredicted RBP12.46□□□□□ -0.41
CSTF1-206ENST00000493039 SPATA31A5Q5VU36 1347 aa12.46□□□□□ -0.41
CSTF1-206ENST00000493039 SPATA31A7Q8IWB4 1347 aa12.46□□□□□ -0.41
CSTF1-206ENST00000493039 SENP3-EIF4A1A0A087X0R7 540 aa12.46□□□□□ -0.42
CSTF1-206ENST00000493039 PRKAR2BP31323 418 aa12.46□□□□□ -0.42
CSTF1-206ENST00000493039 VPS72Q15906 364 aa12.46□□□□□ -0.42
CSTF1-206ENST00000493039 PKNOX2Q96KN3 472 aa12.46□□□□□ -0.42
CSTF1-206ENST00000493039 NWD2Q9ULI1 1742 aa12.46□□□□□ -0.42
CSTF1-206ENST00000493039 SPATA31A1Q5TZJ5 1347 aa12.46□□□□□ -0.42
CSTF1-206ENST00000493039 FAM208AQ9UK61 1670 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9334.5 ms