RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 WNK3Q9BYP7 1800 aa21.12■□□□□ 0.97
USP39-217ENST00000491659 CRB1P82279 1406 aa21.12■□□□□ 0.97
USP39-217ENST00000491659 ANKRD36BQ8N2N9 1353 aa21.1■□□□□ 0.97
USP39-217ENST00000491659 RGPD1P0DJD0 1748 aa21.1■□□□□ 0.97
USP39-217ENST00000491659 PARP4Q9UKK3 1724 aaKnown RBP21.1■□□□□ 0.97
USP39-217ENST00000491659 MYOM1P52179 1685 aa21.1■□□□□ 0.97
USP39-217ENST00000491659 ARHGEF25Q86VW2 580 aa21.1■□□□□ 0.97
USP39-217ENST00000491659 BARGINQ6ZT62 677 aa21.09■□□□□ 0.97
USP39-217ENST00000491659 TCP11L2Q8N4U5 519 aa21.09■□□□□ 0.97
USP39-217ENST00000491659 ZRANB1Q9UGI0 708 aa21.09■□□□□ 0.97
USP39-217ENST00000491659 OVOS2A0A0J9YW53 1432 aa21.09■□□□□ 0.97
USP39-217ENST00000491659 OVOS2Q6IE36 1432 aa21.09■□□□□ 0.97
USP39-217ENST00000491659 SF3B2Q13435 895 aaKnown RBP21.08■□□□□ 0.97
USP39-217ENST00000491659 THRAP3Q9Y2W1 955 aaKnown RBP21.08■□□□□ 0.97
USP39-217ENST00000491659 KIF20BQ96Q89 1820 aa21.07■□□□□ 0.96
USP39-217ENST00000491659 WDR17Q8IZU2 1322 aa21.05■□□□□ 0.96
USP39-217ENST00000491659 TOM1L2Q6ZVM7 507 aa21.05■□□□□ 0.96
USP39-217ENST00000491659 LRRC37A3O60309 1634 aa21.04■□□□□ 0.96
USP39-217ENST00000491659 AXIN2Q9Y2T1 843 aa21.04■□□□□ 0.96
USP39-217ENST00000491659 TNS1Q9HBL0 1735 aaKnown RBP21.04■□□□□ 0.96
USP39-217ENST00000491659 CSB-PGBD3P0DP91 1061 aa21.03■□□□□ 0.96
USP39-217ENST00000491659 COG3Q96JB2 828 aa21.02■□□□□ 0.96
USP39-217ENST00000491659 PDE3BQ13370 1112 aa21.01■□□□□ 0.95
USP39-217ENST00000491659 FAM182BQ5T319 152 aa21.01■□□□□ 0.95
USP39-217ENST00000491659 EIF4G2P78344 907 aaKnown RBP eCLIP21■□□□□ 0.95
USP39-217ENST00000491659 FAM208AQ9UK61 1670 aaKnown RBP20.99■□□□□ 0.95
USP39-217ENST00000491659 BAG6P46379 1132 aa20.98■□□□□ 0.95
USP39-217ENST00000491659 FAM196AQ6ZSG2 479 aa20.98■□□□□ 0.95
USP39-217ENST00000491659 CCDC7Q96M83 1385 aa20.97■□□□□ 0.95
USP39-217ENST00000491659 DEFB132Q7Z7B7 95 aa20.97■□□□□ 0.95
USP39-217ENST00000491659 CARD10Q9BWT7 1032 aa20.97■□□□□ 0.95
USP39-217ENST00000491659 HSPA5P11021 654 aaKnown RBP20.96■□□□□ 0.95
USP39-217ENST00000491659 CDCA7Q9BWT1 371 aaPredicted RBP20.96■□□□□ 0.95
USP39-217ENST00000491659 ERBB3P21860 1342 aa20.96■□□□□ 0.95
USP39-217ENST00000491659 PEAK1Q9H792 1746 aa20.95■□□□□ 0.94
USP39-217ENST00000491659 NSD3Q9BZ95 1437 aa20.95■□□□□ 0.94
USP39-217ENST00000491659 DDB1Q16531 1140 aa20.94■□□□□ 0.94
USP39-217ENST00000491659 POLR3GLQ9BT43 218 aa20.94■□□□□ 0.94
USP39-217ENST00000491659 OVOS2A0A0G2JMS6 1433 aa20.94■□□□□ 0.94
USP39-217ENST00000491659 GGNBP2Q9H3C7 697 aa20.93■□□□□ 0.94
USP39-217ENST00000491659 DISP2A7MBM2 1401 aa20.93■□□□□ 0.94
USP39-217ENST00000491659 C11orf95C9JLR9 678 aaPredicted RBP20.92■□□□□ 0.94
USP39-217ENST00000491659 FYB1O15117 783 aa20.92■□□□□ 0.94
USP39-217ENST00000491659 ANKRD24Q8TF21 1146 aa20.92■□□□□ 0.94
USP39-217ENST00000491659 SBF2Q86WG5 1849 aa20.92■□□□□ 0.94
USP39-217ENST00000491659 RTL1A6NKG5 1358 aa20.91■□□□□ 0.94
USP39-217ENST00000491659 TRIM37O94972 964 aa20.91■□□□□ 0.94
USP39-217ENST00000491659 IP6K1Q92551 441 aa20.91■□□□□ 0.94
USP39-217ENST00000491659 NLRP2Q9NX02 1062 aa20.91■□□□□ 0.94
USP39-217ENST00000491659 MAP3K19Q56UN5 1328 aa20.9■□□□□ 0.94
USP39-217ENST00000491659 ANKRD26Q9UPS8 1709 aa20.9■□□□□ 0.94
USP39-217ENST00000491659 TNS2Q63HR2 1409 aa20.89■□□□□ 0.94
USP39-217ENST00000491659 AMPHP49418 695 aa20.89■□□□□ 0.93
USP39-217ENST00000491659 RGPD2P0DJD1 1756 aa20.87■□□□□ 0.93
USP39-217ENST00000491659 HOXC9P31274 260 aa20.87■□□□□ 0.93
USP39-217ENST00000491659 EN1Q05925 392 aaPredicted RBP20.87■□□□□ 0.93
USP39-217ENST00000491659 CARD14Q9BXL6 1004 aa20.87■□□□□ 0.93
USP39-217ENST00000491659 RREB1Q92766 1687 aa20.86■□□□□ 0.93
USP39-217ENST00000491659 LTV1Q96GA3 475 aaPredicted RBP20.86■□□□□ 0.93
USP39-217ENST00000491659 CGNL1Q0VF96 1302 aa20.85■□□□□ 0.93
USP39-217ENST00000491659 FBLN1P23142 703 aa20.85■□□□□ 0.93
USP39-217ENST00000491659 RRS1Q15050 365 aaKnown RBP20.85■□□□□ 0.93
USP39-217ENST00000491659 SMG6Q86US8 1419 aaKnown RBP20.85■□□□□ 0.93
USP39-217ENST00000491659 RGPD3A6NKT7 1758 aaPredicted RBP20.85■□□□□ 0.93
USP39-217ENST00000491659 RGPD4Q7Z3J3 1758 aa20.85■□□□□ 0.93
USP39-217ENST00000491659 PARD3Q8TEW0 1356 aa20.85■□□□□ 0.93
USP39-217ENST00000491659 EXOC5O00471 708 aa20.84■□□□□ 0.93
USP39-217ENST00000491659 APBA3O96018 575 aa20.84■□□□□ 0.93
USP39-217ENST00000491659 IL2RBP14784 551 aa20.84■□□□□ 0.93
USP39-217ENST00000491659 BCL9O00512 1426 aa20.83■□□□□ 0.93
USP39-217ENST00000491659 KIF24Q5T7B8 1368 aa20.83■□□□□ 0.92
USP39-217ENST00000491659 NUP188Q5SRE5 1749 aa20.82■□□□□ 0.92
USP39-217ENST00000491659 MARCH10Q8NA82 808 aaPredicted RBP20.82■□□□□ 0.92
USP39-217ENST00000491659 FLT4P35916 1363 aa20.82■□□□□ 0.92
USP39-217ENST00000491659 EZH2Q15910 746 aaKnown RBP20.81■□□□□ 0.92
USP39-217ENST00000491659 MAP2P11137 1827 aaKnown RBP20.81■□□□□ 0.92
USP39-217ENST00000491659 NHSQ6T4R5 1651 aa20.8■□□□□ 0.92
USP39-217ENST00000491659 CAMKK2Q96RR4 588 aa20.79■□□□□ 0.92
USP39-217ENST00000491659 INSRP06213 1382 aa20.78■□□□□ 0.92
USP39-217ENST00000491659 PANK3Q9H999 370 aa20.77■□□□□ 0.92
USP39-217ENST00000491659 SHANK3Q9BYB0 1731 aa20.76■□□□□ 0.91
USP39-217ENST00000491659 BCL11BQ9C0K0 894 aaPredicted RBP20.76■□□□□ 0.91
USP39-217ENST00000491659 NSD2O96028 1365 aa20.75■□□□□ 0.91
USP39-217ENST00000491659 EMILIN1Q9Y6C2 1016 aa20.75■□□□□ 0.91
USP39-217ENST00000491659 MEGF6O75095 1541 aa20.74■□□□□ 0.91
USP39-217ENST00000491659 HSP90AB2PQ58FF8 381 aa20.74■□□□□ 0.91
USP39-217ENST00000491659 PSDA5PKW4 1024 aaPredicted RBP20.73■□□□□ 0.91
USP39-217ENST00000491659 PPM1GO15355 546 aaPredicted RBP20.73■□□□□ 0.91
USP39-217ENST00000491659 KIF7Q2M1P5 1343 aa20.73■□□□□ 0.91
USP39-217ENST00000491659 NBPF6Q5VWK0 638 aa20.72■□□□□ 0.91
USP39-217ENST00000491659 NBPF4Q96M43 638 aa20.72■□□□□ 0.91
USP39-217ENST00000491659 BTAF1O14981 1849 aa20.71■□□□□ 0.91
USP39-217ENST00000491659 LRP5O75197 1615 aa20.71■□□□□ 0.91
USP39-217ENST00000491659 DOT1LQ8TEK3 1739 aa20.71■□□□□ 0.91
USP39-217ENST00000491659 PLSCR1O15162 318 aa20.7■□□□□ 0.9
USP39-217ENST00000491659 USHBP1Q8N6Y0 703 aa20.7■□□□□ 0.9
USP39-217ENST00000491659 KAT6BQ8WYB5 2073 aa20.69■□□□□ 0.9
USP39-217ENST00000491659 TNNT2P45379 298 aaPredicted RBP20.69■□□□□ 0.9
USP39-217ENST00000491659 R3HDM1Q15032 1099 aaKnown RBP20.69■□□□□ 0.9
USP39-217ENST00000491659 NBPF14Q5TI25 921 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms