RNA–Protein interactions for RNA: ENST00000489728.1

CPSF7-212, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 488 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-212ENST00000489728 ILDR2Q71H61 639 aa15.22■□□□□ 0.03
CPSF7-212ENST00000489728 GGNBP2Q9H3C7 697 aa15.22■□□□□ 0.03
CPSF7-212ENST00000489728 KNSTRNQ9Y448 316 aa15.21■□□□□ 0.03
CPSF7-212ENST00000489728 SPATA31A5Q5VU36 1347 aa15.2■□□□□ 0.02
CPSF7-212ENST00000489728 SPATA31A7Q8IWB4 1347 aa15.2■□□□□ 0.02
CPSF7-212ENST00000489728 RGS12O14924 1447 aa15.2■□□□□ 0.02
CPSF7-212ENST00000489728 FAM208AQ9UK61 1670 aaKnown RBP15.2■□□□□ 0.02
CPSF7-212ENST00000489728 NPC1L1Q9UHC9 1359 aa15.2■□□□□ 0.02
CPSF7-212ENST00000489728 CRB1P82279 1406 aa15.19■□□□□ 0.02
CPSF7-212ENST00000489728 SOX12O15370 315 aa15.19■□□□□ 0.02
CPSF7-212ENST00000489728 EVA1CP58658 441 aa15.19■□□□□ 0.02
CPSF7-212ENST00000489728 SPATA31A1Q5TZJ5 1347 aa15.18■□□□□ 0.02
CPSF7-212ENST00000489728 WDR17Q8IZU2 1322 aa15.18■□□□□ 0.02
CPSF7-212ENST00000489728 ONECUT3O60422 494 aaPredicted RBP15.18■□□□□ 0.02
CPSF7-212ENST00000489728 THRAP3Q9Y2W1 955 aaKnown RBP15.18■□□□□ 0.02
CPSF7-212ENST00000489728 THSD7AQ9UPZ6 1657 aa15.18■□□□□ 0.02
CPSF7-212ENST00000489728 RGPD5Q99666 1765 aa15.18■□□□□ 0.02
CPSF7-212ENST00000489728 MAP3K19Q56UN5 1328 aa15.17■□□□□ 0.02
CPSF7-212ENST00000489728 PER1O15534 1290 aaPredicted RBP15.17■□□□□ 0.02
CPSF7-212ENST00000489728 IP6K1Q92551 441 aa15.17■□□□□ 0.02
CPSF7-212ENST00000489728 STRN4Q9NRL3 753 aa15.17■□□□□ 0.02
CPSF7-212ENST00000489728 CCDC9Q9Y3X0 531 aaKnown RBP15.17■□□□□ 0.02
CPSF7-212ENST00000489728 ERBB3P21860 1342 aa15.17■□□□□ 0.02
CPSF7-212ENST00000489728 ZBTB7CA1YPR0 619 aa15.16■□□□□ 0.02
CPSF7-212ENST00000489728 AMER1Q5JTC6 1135 aaPredicted RBP15.16■□□□□ 0.02
CPSF7-212ENST00000489728 BARGINQ6ZT62 677 aa15.16■□□□□ 0.02
CPSF7-212ENST00000489728 AXIN2Q9Y2T1 843 aa15.16■□□□□ 0.02
CPSF7-212ENST00000489728 FLT4P35916 1363 aa15.15■□□□□ 0.02
CPSF7-212ENST00000489728 LARP1Q6PKG0 1096 aaKnown RBP15.15■□□□□ 0.02
CPSF7-212ENST00000489728 SMG6Q86US8 1419 aaKnown RBP15.15■□□□□ 0.02
CPSF7-212ENST00000489728 HOXC9P31274 260 aa15.14■□□□□ 0.01
CPSF7-212ENST00000489728 AMPHP49418 695 aa15.14■□□□□ 0.01
CPSF7-212ENST00000489728 TCP11L2Q8N4U5 519 aa15.14■□□□□ 0.01
CPSF7-212ENST00000489728 WNK3Q9BYP7 1800 aa15.14■□□□□ 0.01
CPSF7-212ENST00000489728 INSRP06213 1382 aa15.13■□□□□ 0.01
CPSF7-212ENST00000489728 CARD10Q9BWT7 1032 aa15.13■□□□□ 0.01
CPSF7-212ENST00000489728 PEAK1Q9H792 1746 aa15.13■□□□□ 0.01
CPSF7-212ENST00000489728 PARP4Q9UKK3 1724 aaKnown RBP15.13■□□□□ 0.01
CPSF7-212ENST00000489728 TOM1L2Q6ZVM7 507 aa15.12■□□□□ 0.01
CPSF7-212ENST00000489728 MORC1Q86VD1 984 aa15.12■□□□□ 0.01
CPSF7-212ENST00000489728 CDCA7Q9BWT1 371 aaPredicted RBP15.12■□□□□ 0.01
CPSF7-212ENST00000489728 MAP2P11137 1827 aaKnown RBP15.12■□□□□ 0.01
CPSF7-212ENST00000489728 SOCS7O14512 581 aa15.11■□□□□ 0.01
CPSF7-212ENST00000489728 CSB-PGBD3P0DP91 1061 aa15.11■□□□□ 0.01
CPSF7-212ENST00000489728 RRS1Q15050 365 aaKnown RBP15.11■□□□□ 0.01
CPSF7-212ENST00000489728 ANKRD24Q8TF21 1146 aa15.11■□□□□ 0.01
CPSF7-212ENST00000489728 FAM98CQ17RN3 349 aaKnown RBP15.1■□□□□ 0.01
CPSF7-212ENST00000489728 SEPT12Q8IYM1 358 aa15.1■□□□□ 0.01
CPSF7-212ENST00000489728 BRWD3Q6RI45 1802 aa15.1■□□□□ 0.01
CPSF7-212ENST00000489728 DISP2A7MBM2 1401 aa15.09■□□□□ 0.01
CPSF7-212ENST00000489728 POLKQ9UBT6 870 aa15.09■□□□□ 0.01
CPSF7-212ENST00000489728 FBLN1P23142 703 aa15.08■□□□□ 0
CPSF7-212ENST00000489728 EMILIN1Q9Y6C2 1016 aa15.08■□□□□ 0
CPSF7-212ENST00000489728 LRRC37A3O60309 1634 aa15.07■□□□□ 0
CPSF7-212ENST00000489728 USP35Q9P2H5 1018 aa15.07■□□□□ 0
CPSF7-212ENST00000489728 A0A0G2JS52 829 aa15.06■□□□□ 0
CPSF7-212ENST00000489728 MYT1Q01538 1121 aa15.06■□□□□ 0
CPSF7-212ENST00000489728 NLRP2Q9NX02 1062 aa15.06■□□□□ 0
CPSF7-212ENST00000489728 NCAPD2Q15021 1401 aa15.06■□□□□ 0
CPSF7-212ENST00000489728 HSP90AB2PQ58FF8 381 aa15.05■□□□□ -0
CPSF7-212ENST00000489728 KRT27Q7Z3Y8 459 aa15.05■□□□□ -0
CPSF7-212ENST00000489728 PLEKHG2Q9H7P9 1386 aa15.05■□□□□ -0
CPSF7-212ENST00000489728 TNS2Q63HR2 1409 aa15.04■□□□□ -0
CPSF7-212ENST00000489728 TNNT2P45379 298 aaPredicted RBP15.04■□□□□ -0
CPSF7-212ENST00000489728 CC2D1BQ5T0F9 858 aaKnown RBP15.04■□□□□ -0
CPSF7-212ENST00000489728 EP400Q96L91 3159 aa15.03■□□□□ -0
CPSF7-212ENST00000489728 PPM1GO15355 546 aaPredicted RBP15.03■□□□□ -0
CPSF7-212ENST00000489728 IL2RBP14784 551 aa15.02■□□□□ -0
CPSF7-212ENST00000489728 LTV1Q96GA3 475 aaPredicted RBP15.02■□□□□ -0
CPSF7-212ENST00000489728 RGPD2P0DJD1 1756 aa15.02□□□□□ -0.01
CPSF7-212ENST00000489728 BCL9O00512 1426 aa15.01□□□□□ -0.01
CPSF7-212ENST00000489728 PDE3BQ13370 1112 aa15.01□□□□□ -0.01
CPSF7-212ENST00000489728 DDB1Q16531 1140 aa15.01□□□□□ -0.01
CPSF7-212ENST00000489728 CCDC125Q86Z20 511 aa15.01□□□□□ -0.01
CPSF7-212ENST00000489728 OVOS2A0A0G2JMS6 1433 aa15□□□□□ -0.01
CPSF7-212ENST00000489728 PARD3Q8TEW0 1356 aa15□□□□□ -0.01
CPSF7-212ENST00000489728 NBPF6Q5VWK0 638 aa15□□□□□ -0.01
CPSF7-212ENST00000489728 NBPF4Q96M43 638 aa15□□□□□ -0.01
CPSF7-212ENST00000489728 ZNF316A6NFI3 1004 aaPredicted RBP14.99□□□□□ -0.01
CPSF7-212ENST00000489728 EIF4A2Q14240 407 aaKnown RBP14.99□□□□□ -0.01
CPSF7-212ENST00000489728 RGPD1P0DJD0 1748 aa14.99□□□□□ -0.01
CPSF7-212ENST00000489728 IGSF1Q8N6C5 1336 aa14.98□□□□□ -0.01
CPSF7-212ENST00000489728 EXOC5O00471 708 aa14.98□□□□□ -0.01
CPSF7-212ENST00000489728 MTHFSP49914 203 aa14.98□□□□□ -0.01
CPSF7-212ENST00000489728 DDX10Q13206 875 aaKnown RBP14.98□□□□□ -0.01
CPSF7-212ENST00000489728 FAM196AQ6ZSG2 479 aa14.98□□□□□ -0.01
CPSF7-212ENST00000489728 UPF1Q92900 1129 aaKnown RBP eCLIP14.98□□□□□ -0.01
CPSF7-212ENST00000489728 MEGF6O75095 1541 aa14.97□□□□□ -0.01
CPSF7-212ENST00000489728 RAPGEF4Q8WZA2 1011 aa14.97□□□□□ -0.01
CPSF7-212ENST00000489728 PKD1L3Q7Z443 1732 aa14.97□□□□□ -0.01
CPSF7-212ENST00000489728 COL3A1P02461 1466 aaPredicted RBP14.96□□□□□ -0.01
CPSF7-212ENST00000489728 EYA1Q99502 592 aa14.96□□□□□ -0.01
CPSF7-212ENST00000489728 TATP17735 454 aaPredicted RBP14.95□□□□□ -0.02
CPSF7-212ENST00000489728 RALBP1Q15311 655 aa14.95□□□□□ -0.02
CPSF7-212ENST00000489728 KDRP35968 1356 aa14.95□□□□□ -0.02
CPSF7-212ENST00000489728 SHANK3Q9BYB0 1731 aa14.95□□□□□ -0.02
CPSF7-212ENST00000489728 PPP2R1AP30153 589 aa14.94□□□□□ -0.02
CPSF7-212ENST00000489728 IL13P35225 146 aa14.94□□□□□ -0.02
CPSF7-212ENST00000489728 CFAP53Q96M91 514 aa14.94□□□□□ -0.02
CPSF7-212ENST00000489728 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms