RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 NGEFQ8N5V2 710 aa28.62■■■□□ 2.17
SMC4-221ENST00000489573 FCHSD2O94868 740 aa28.62■■■□□ 2.17
SMC4-221ENST00000489573 ROBO1Q9Y6N7 1651 aa28.61■■■□□ 2.17
SMC4-221ENST00000489573 UBAP1LF5GYI3 381 aa28.61■■■□□ 2.17
SMC4-221ENST00000489573 PLEKHF1Q96S99 279 aa28.6■■■□□ 2.17
SMC4-221ENST00000489573 PLEKHG5O94827 1062 aa28.59■■■□□ 2.17
SMC4-221ENST00000489573 RSPH6AQ9H0K4 717 aa28.59■■■□□ 2.17
SMC4-221ENST00000489573 PDE3BQ13370 1112 aa28.58■■■□□ 2.17
SMC4-221ENST00000489573 IP6K1Q92551 441 aa28.58■■■□□ 2.17
SMC4-221ENST00000489573 RGPD1P0DJD0 1748 aa28.58■■■□□ 2.17
SMC4-221ENST00000489573 ARHGEF25Q86VW2 580 aa28.58■■■□□ 2.17
SMC4-221ENST00000489573 TCP11L2Q8N4U5 519 aa28.58■■■□□ 2.17
SMC4-221ENST00000489573 MAPK8IP3Q9UPT6 1336 aa28.57■■■□□ 2.16
SMC4-221ENST00000489573 CRYBG1Q9Y4K1 1723 aa28.57■■■□□ 2.16
SMC4-221ENST00000489573 AHDC1Q5TGY3 1603 aaPredicted RBP28.56■■■□□ 2.16
SMC4-221ENST00000489573 HMOX1P09601 288 aa28.56■■■□□ 2.16
SMC4-221ENST00000489573 ZNF521Q96K83 1311 aa28.55■■■□□ 2.16
SMC4-221ENST00000489573 ZBTB7CA1YPR0 619 aa28.54■■■□□ 2.16
SMC4-221ENST00000489573 PRKAR2BP31323 418 aa28.54■■■□□ 2.16
SMC4-221ENST00000489573 TOM1O60784 492 aa28.53■■■□□ 2.16
SMC4-221ENST00000489573 NEFMP07197 916 aa28.53■■■□□ 2.16
SMC4-221ENST00000489573 NCBP3Q53F19 620 aaKnown RBP28.53■■■□□ 2.16
SMC4-221ENST00000489573 CABLES1Q8TDN4 633 aa28.51■■■□□ 2.15
SMC4-221ENST00000489573 RRP7AQ9Y3A4 280 aaKnown RBP28.5■■■□□ 2.15
SMC4-221ENST00000489573 SULT6B1Q6IMI4 303 aa28.5■■■□□ 2.15
SMC4-221ENST00000489573 IGSF1Q8N6C5 1336 aa28.49■■■□□ 2.15
SMC4-221ENST00000489573 ZC3H6P61129 1189 aaKnown RBP28.49■■■□□ 2.15
SMC4-221ENST00000489573 NEUROD2Q15784 382 aa28.48■■■□□ 2.15
SMC4-221ENST00000489573 CCDC27Q2M243 656 aa28.48■■■□□ 2.15
SMC4-221ENST00000489573 LTV1Q96GA3 475 aaPredicted RBP28.48■■■□□ 2.15
SMC4-221ENST00000489573 EYA1Q99502 592 aa28.48■■■□□ 2.15
SMC4-221ENST00000489573 TMPOP42166 694 aaKnown RBP28.47■■■□□ 2.15
SMC4-221ENST00000489573 AEBP1Q8IUX7 1158 aa28.47■■■□□ 2.15
SMC4-221ENST00000489573 ABCC6O95255 1503 aa28.47■■■□□ 2.15
SMC4-221ENST00000489573 CPDO75976 1380 aa28.46■■■□□ 2.15
SMC4-221ENST00000489573 PHF23Q9BUL5 403 aaPredicted RBP28.46■■■□□ 2.15
SMC4-221ENST00000489573 KDRP35968 1356 aa28.46■■■□□ 2.15
SMC4-221ENST00000489573 GOLGA2Q08379 1002 aa28.45■■■□□ 2.15
SMC4-221ENST00000489573 WWC1Q8IX03 1113 aa28.45■■■□□ 2.15
SMC4-221ENST00000489573 CDCA7LQ96GN5 454 aa28.45■■■□□ 2.15
SMC4-221ENST00000489573 ABCA3Q99758 1704 aa28.45■■■□□ 2.15
SMC4-221ENST00000489573 LRRC59Q96AG4 307 aaKnown RBP28.45■■■□□ 2.14
SMC4-221ENST00000489573 PIP4K2BP78356 416 aa28.44■■■□□ 2.14
SMC4-221ENST00000489573 PHACTR3Q96KR7 559 aa28.44■■■□□ 2.14
SMC4-221ENST00000489573 KIAA0232Q92628 1395 aa28.42■■■□□ 2.14
SMC4-221ENST00000489573 NFE2L2Q16236 605 aa28.41■■■□□ 2.14
SMC4-221ENST00000489573 HAP1P54257 671 aaPredicted RBP28.41■■■□□ 2.14
SMC4-221ENST00000489573 COL18A1P39060 1754 aa28.41■■■□□ 2.14
SMC4-221ENST00000489573 RIPK4P57078 832 aa28.4■■■□□ 2.14
SMC4-221ENST00000489573 ANKRD24Q8TF21 1146 aa28.4■■■□□ 2.14
SMC4-221ENST00000489573 AXIN2Q9Y2T1 843 aa28.4■■■□□ 2.14
SMC4-221ENST00000489573 PHLPP1O60346 1717 aa28.4■■■□□ 2.14
SMC4-221ENST00000489573 WDR63Q8IWG1 891 aa28.39■■■□□ 2.14
SMC4-221ENST00000489573 COL16A1Q07092 1604 aaPredicted RBP28.39■■■□□ 2.13
SMC4-221ENST00000489573 SLFN5Q08AF3 891 aa28.37■■■□□ 2.13
SMC4-221ENST00000489573 COL22A1Q8NFW1 1626 aaPredicted RBP28.37■■■□□ 2.13
SMC4-221ENST00000489573 E9PSI1 815 aa28.37■■■□□ 2.13
SMC4-221ENST00000489573 TRIM35Q9UPQ4 493 aa28.37■■■□□ 2.13
SMC4-221ENST00000489573 ERBB3P21860 1342 aa28.36■■■□□ 2.13
SMC4-221ENST00000489573 NBPF6Q5VWK0 638 aa28.36■■■□□ 2.13
SMC4-221ENST00000489573 NBPF4Q96M43 638 aa28.36■■■□□ 2.13
SMC4-221ENST00000489573 RGPD5Q99666 1765 aa28.35■■■□□ 2.13
SMC4-221ENST00000489573 CHRNA2Q15822 529 aa28.35■■■□□ 2.13
SMC4-221ENST00000489573 PRDM11Q9NQV5 511 aa28.35■■■□□ 2.13
SMC4-221ENST00000489573 CAMTA1Q9Y6Y1 1673 aa28.35■■■□□ 2.13
SMC4-221ENST00000489573 NCAPD2Q15021 1401 aa28.34■■■□□ 2.13
SMC4-221ENST00000489573 DUSP27Q5VZP5 1158 aa28.33■■■□□ 2.13
SMC4-221ENST00000489573 USHBP1Q8N6Y0 703 aa28.33■■■□□ 2.13
SMC4-221ENST00000489573 SPINK5Q9NQ38 1064 aaPredicted RBP28.33■■■□□ 2.13
SMC4-221ENST00000489573 TRMT2AQ8IZ69 625 aaKnown RBP28.33■■■□□ 2.12
SMC4-221ENST00000489573 RGPD2P0DJD1 1756 aa28.32■■■□□ 2.12
SMC4-221ENST00000489573 HSPA1LP34931 641 aa28.32■■■□□ 2.12
SMC4-221ENST00000489573 LMOD3Q0VAK6 560 aa28.32■■■□□ 2.12
SMC4-221ENST00000489573 LMO7Q8WWI1 1683 aa28.3■■■□□ 2.12
SMC4-221ENST00000489573 FAM208AQ9UK61 1670 aaKnown RBP28.3■■■□□ 2.12
SMC4-221ENST00000489573 SUPT16HQ9Y5B9 1047 aaKnown RBP28.28■■■□□ 2.12
SMC4-221ENST00000489573 GTF3C3Q9Y5Q9 886 aa28.28■■■□□ 2.12
SMC4-221ENST00000489573 IL16Q14005 1332 aa28.28■■■□□ 2.12
SMC4-221ENST00000489573 DLG5Q8TDM6 1919 aa28.27■■■□□ 2.12
SMC4-221ENST00000489573 GAS2L2Q8NHY3 880 aa28.27■■■□□ 2.12
SMC4-221ENST00000489573 CSB-PGBD3P0DP91 1061 aa28.26■■■□□ 2.11
SMC4-221ENST00000489573 MTHFSDQ2M296 383 aaKnown RBP28.26■■■□□ 2.11
SMC4-221ENST00000489573 CALD1Q05682 793 aaKnown RBP28.24■■■□□ 2.11
SMC4-221ENST00000489573 MYH16Q9H6N6 1097 aa28.24■■■□□ 2.11
SMC4-221ENST00000489573 NLRP2Q9NX02 1062 aa28.24■■■□□ 2.11
SMC4-221ENST00000489573 COL5A2P05997 1499 aaPredicted RBP28.22■■■□□ 2.11
SMC4-221ENST00000489573 RCAN3Q9UKA8 241 aa28.22■■■□□ 2.11
SMC4-221ENST00000489573 ILDR2Q71H61 639 aa28.21■■■□□ 2.11
SMC4-221ENST00000489573 FAM83GA6ND36 823 aa28.2■■■□□ 2.11
SMC4-221ENST00000489573 WDR17Q8IZU2 1322 aa28.19■■■□□ 2.1
SMC4-221ENST00000489573 COL14A1Q05707 1796 aaKnown RBP28.19■■■□□ 2.1
SMC4-221ENST00000489573 NEFLP07196 543 aa28.19■■■□□ 2.1
SMC4-221ENST00000489573 THUMPD2Q9BTF0 503 aaKnown RBP28.19■■■□□ 2.1
SMC4-221ENST00000489573 FANCIQ9NVI1 1328 aa28.17■■■□□ 2.1
SMC4-221ENST00000489573 AMOTQ4VCS5 1084 aa28.16■■■□□ 2.1
SMC4-221ENST00000489573 PLEKHO1Q53GL0 409 aaPredicted RBP28.16■■■□□ 2.1
SMC4-221ENST00000489573 MAP3K5Q99683 1374 aa28.16■■■□□ 2.1
SMC4-221ENST00000489573 HTATSF1O43719 755 aaKnown RBP28.16■■■□□ 2.1
SMC4-221ENST00000489573 DCTN1Q14203 1278 aa28.16■■■□□ 2.1
SMC4-221ENST00000489573 RTF1Q92541 710 aaKnown RBP28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms