RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 ERICH6BQ5W0A0 696 aa8.54□□□□□ -1.04
SF3A3-208ENST00000489537 NGEFQ8N5V2 710 aa8.54□□□□□ -1.04
SF3A3-208ENST00000489537 GTF3C3Q9Y5Q9 886 aa8.54□□□□□ -1.04
SF3A3-208ENST00000489537 NEXMIFQ5QGS0 1516 aa8.54□□□□□ -1.04
SF3A3-208ENST00000489537 RIMS2Q9UQ26 1411 aa8.54□□□□□ -1.04
SF3A3-208ENST00000489537 ZBED9Q6R2W3 1325 aa8.54□□□□□ -1.04
SF3A3-208ENST00000489537 PER1O15534 1290 aaPredicted RBP8.53□□□□□ -1.04
SF3A3-208ENST00000489537 HNRNPUQ00839 825 aaKnown RBP eCLIP8.53□□□□□ -1.04
SF3A3-208ENST00000489537 SIRT1Q96EB6 747 aa8.53□□□□□ -1.04
SF3A3-208ENST00000489537 PANK3Q9H999 370 aa8.53□□□□□ -1.04
SF3A3-208ENST00000489537 EID1Q9Y6B2 187 aa8.53□□□□□ -1.04
SF3A3-208ENST00000489537 PTPRUQ92729 1446 aa8.53□□□□□ -1.04
SF3A3-208ENST00000489537 NWD1Q149M9 1564 aa8.52□□□□□ -1.04
SF3A3-208ENST00000489537 ATAD2Q6PL18 1390 aa8.52□□□□□ -1.05
SF3A3-208ENST00000489537 PPP1R37O75864 691 aa8.52□□□□□ -1.05
SF3A3-208ENST00000489537 ZNF687Q8N1G0 1237 aa8.52□□□□□ -1.05
SF3A3-208ENST00000489537 ADGRB1O14514 1584 aa8.52□□□□□ -1.05
SF3A3-208ENST00000489537 NSD2O96028 1365 aa8.51□□□□□ -1.05
SF3A3-208ENST00000489537 SLC34A2O95436 690 aa8.51□□□□□ -1.05
SF3A3-208ENST00000489537 PDE3BQ13370 1112 aa8.51□□□□□ -1.05
SF3A3-208ENST00000489537 PROSER2Q86WR7 435 aaPredicted RBP8.51□□□□□ -1.05
SF3A3-208ENST00000489537 PLEKHG1Q9ULL1 1385 aa8.5□□□□□ -1.05
SF3A3-208ENST00000489537 ASXL1Q8IXJ9 1541 aa8.5□□□□□ -1.05
SF3A3-208ENST00000489537 CHD2O14647 1828 aaKnown RBP8.5□□□□□ -1.05
SF3A3-208ENST00000489537 TERF2IPQ9NYB0 399 aa8.5□□□□□ -1.05
SF3A3-208ENST00000489537 POGKQ9P215 609 aa8.5□□□□□ -1.05
SF3A3-208ENST00000489537 NRXN3Q9Y4C0 1643 aa8.5□□□□□ -1.05
SF3A3-208ENST00000489537 DLC1Q96QB1 1528 aa8.49□□□□□ -1.05
SF3A3-208ENST00000489537 ABCC11Q96J66 1382 aa8.49□□□□□ -1.05
SF3A3-208ENST00000489537 FAM135BQ49AJ0 1406 aa8.49□□□□□ -1.05
SF3A3-208ENST00000489537 FAM9BQ8IZU0 186 aa8.49□□□□□ -1.05
SF3A3-208ENST00000489537 PNISRQ8TF01 805 aaKnown RBP8.49□□□□□ -1.05
SF3A3-208ENST00000489537 TRAK1Q9UPV9 953 aa8.49□□□□□ -1.05
SF3A3-208ENST00000489537 ROBO1Q9Y6N7 1651 aa8.49□□□□□ -1.05
SF3A3-208ENST00000489537 CGNL1Q0VF96 1302 aa8.49□□□□□ -1.05
SF3A3-208ENST00000489537 LRPPRCP42704 1394 aaKnown RBP8.48□□□□□ -1.05
SF3A3-208ENST00000489537 YTHDC2Q9H6S0 1430 aaKnown RBP8.48□□□□□ -1.05
SF3A3-208ENST00000489537 NUDT7P0C024 238 aa8.48□□□□□ -1.05
SF3A3-208ENST00000489537 KHSRPQ92945 711 aaKnown RBP eCLIP8.48□□□□□ -1.05
SF3A3-208ENST00000489537 PCDHGA4Q9Y5G9 962 aa8.48□□□□□ -1.05
SF3A3-208ENST00000489537 METP08581 1390 aa8.48□□□□□ -1.05
SF3A3-208ENST00000489537 NKTRP30414 1462 aaKnown RBP8.47□□□□□ -1.05
SF3A3-208ENST00000489537 POTEAQ6S8J7 498 aa8.47□□□□□ -1.05
SF3A3-208ENST00000489537 BCANQ96GW7 911 aa8.47□□□□□ -1.05
SF3A3-208ENST00000489537 TBX22Q9Y458 520 aa8.47□□□□□ -1.05
SF3A3-208ENST00000489537 ANKRD36BQ8N2N9 1353 aa8.47□□□□□ -1.05
SF3A3-208ENST00000489537 TBC1D12O60347 775 aa8.46□□□□□ -1.06
SF3A3-208ENST00000489537 WDR43Q15061 677 aaKnown RBP eCLIP8.46□□□□□ -1.06
SF3A3-208ENST00000489537 AMER1Q5JTC6 1135 aaPredicted RBP8.46□□□□□ -1.06
SF3A3-208ENST00000489537 HDGFL2Q7Z4V5 671 aaPredicted RBP8.46□□□□□ -1.06
SF3A3-208ENST00000489537 CFAP53Q96M91 514 aa8.46□□□□□ -1.06
SF3A3-208ENST00000489537 GPHNQ9NQX3 736 aaPredicted RBP8.46□□□□□ -1.06
SF3A3-208ENST00000489537 SLAIN2Q9P270 581 aa8.46□□□□□ -1.06
SF3A3-208ENST00000489537 PSDA5PKW4 1024 aaPredicted RBP8.45□□□□□ -1.06
SF3A3-208ENST00000489537 PTGER2P43116 358 aa8.45□□□□□ -1.06
SF3A3-208ENST00000489537 FOXK1P85037 733 aa8.45□□□□□ -1.06
SF3A3-208ENST00000489537 TECPR2O15040 1411 aa8.45□□□□□ -1.06
SF3A3-208ENST00000489537 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.44□□□□□ -1.06
SF3A3-208ENST00000489537 SRPK2P78362 688 aaKnown RBP8.44□□□□□ -1.06
SF3A3-208ENST00000489537 CC2D1BQ5T0F9 858 aaKnown RBP8.44□□□□□ -1.06
SF3A3-208ENST00000489537 TMEM132EQ6IEE7 984 aa8.44□□□□□ -1.06
SF3A3-208ENST00000489537 PLPP6Q8IY26 295 aa8.44□□□□□ -1.06
SF3A3-208ENST00000489537 DDX17Q92841 729 aaKnown RBP8.44□□□□□ -1.06
SF3A3-208ENST00000489537 AMOTL2Q9Y2J4 779 aa8.44□□□□□ -1.06
SF3A3-208ENST00000489537 LRP6O75581 1613 aa8.43□□□□□ -1.06
SF3A3-208ENST00000489537 COL16A1Q07092 1604 aaPredicted RBP8.43□□□□□ -1.06
SF3A3-208ENST00000489537 USP32Q8NFA0 1604 aa8.43□□□□□ -1.06
SF3A3-208ENST00000489537 QRICH2Q9H0J4 1663 aa8.43□□□□□ -1.06
SF3A3-208ENST00000489537 XRN1Q8IZH2 1706 aaKnown RBP8.43□□□□□ -1.06
SF3A3-208ENST00000489537 PBX2P40425 430 aa8.43□□□□□ -1.06
SF3A3-208ENST00000489537 PRAM1Q96QH2 718 aa8.43□□□□□ -1.06
SF3A3-208ENST00000489537 PNNQ9H307 717 aaKnown RBP8.43□□□□□ -1.06
SF3A3-208ENST00000489537 PIK3R4Q99570 1358 aa8.43□□□□□ -1.06
SF3A3-208ENST00000489537 PPP2R1AP30153 589 aa8.42□□□□□ -1.06
SF3A3-208ENST00000489537 NKX1-1Q15270 411 aaPredicted RBP8.42□□□□□ -1.06
SF3A3-208ENST00000489537 MORC1Q86VD1 984 aa8.42□□□□□ -1.06
SF3A3-208ENST00000489537 LHX6Q9UPM6 363 aa8.42□□□□□ -1.06
SF3A3-208ENST00000489537 MSH6P52701 1360 aa8.42□□□□□ -1.06
SF3A3-208ENST00000489537 SMG6Q86US8 1419 aaKnown RBP8.42□□□□□ -1.06
SF3A3-208ENST00000489537 DIP2AQ14689 1571 aa8.42□□□□□ -1.06
SF3A3-208ENST00000489537 SETD1AO15047 1707 aaKnown RBP8.42□□□□□ -1.06
SF3A3-208ENST00000489537 PHLPP1O60346 1717 aa8.41□□□□□ -1.06
SF3A3-208ENST00000489537 ARHGEF28Q8N1W1 1705 aaKnown RBP8.41□□□□□ -1.06
SF3A3-208ENST00000489537 POLR3AO14802 1390 aaPredicted RBP8.41□□□□□ -1.06
SF3A3-208ENST00000489537 ANKRD13DQ6ZTN6 518 aa8.41□□□□□ -1.06
SF3A3-208ENST00000489537 PTCD2Q8WV60 388 aaKnown RBP8.41□□□□□ -1.06
SF3A3-208ENST00000489537 RNF166Q96A37 237 aaPredicted RBP8.41□□□□□ -1.06
SF3A3-208ENST00000489537 STK26Q9P289 416 aa8.41□□□□□ -1.06
SF3A3-208ENST00000489537 NUDCQ9Y266 331 aa8.41□□□□□ -1.06
SF3A3-208ENST00000489537 ATP7BP35670 1465 aa8.4□□□□□ -1.06
SF3A3-208ENST00000489537 ROBO2Q9HCK4 1378 aa8.4□□□□□ -1.06
SF3A3-208ENST00000489537 BRINP3Q76B58 766 aa8.4□□□□□ -1.06
SF3A3-208ENST00000489537 BLMP54132 1417 aaPredicted RBP8.39□□□□□ -1.07
SF3A3-208ENST00000489537 MST1RQ04912 1400 aa8.39□□□□□ -1.07
SF3A3-208ENST00000489537 NSD3Q9BZ95 1437 aa8.39□□□□□ -1.07
SF3A3-208ENST00000489537 DSG2Q14126 1118 aa8.39□□□□□ -1.07
SF3A3-208ENST00000489537 CCDC184Q52MB2 194 aa8.39□□□□□ -1.07
SF3A3-208ENST00000489537 CDK19Q9BWU1 502 aa8.39□□□□□ -1.07
SF3A3-208ENST00000489537 SLC12A5Q9H2X9 1139 aa8.39□□□□□ -1.07
SF3A3-208ENST00000489537 C19orf44Q9H6X5 657 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms