RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 SEPT12Q8IYM1 358 aa16.99■□□□□ 0.31
NELFE-209ENST00000488426 NRKQ7Z2Y5 1582 aa16.98■□□□□ 0.31
NELFE-209ENST00000488426 USP6P35125 1406 aa16.98■□□□□ 0.31
NELFE-209ENST00000488426 SSH2Q76I76 1423 aa16.98■□□□□ 0.31
NELFE-209ENST00000488426 SRCAPQ6ZRS2 3230 aa16.98■□□□□ 0.31
NELFE-209ENST00000488426 NWD2Q9ULI1 1742 aa16.98■□□□□ 0.31
NELFE-209ENST00000488426 ONECUT3O60422 494 aaPredicted RBP16.97■□□□□ 0.31
NELFE-209ENST00000488426 NRAPQ86VF7 1730 aa16.97■□□□□ 0.31
NELFE-209ENST00000488426 PHRF1Q9P1Y6 1649 aaKnown RBP16.97■□□□□ 0.31
NELFE-209ENST00000488426 WDR43Q15061 677 aaKnown RBP eCLIP16.97■□□□□ 0.31
NELFE-209ENST00000488426 FAM98CQ17RN3 349 aaKnown RBP16.97■□□□□ 0.31
NELFE-209ENST00000488426 USP19O94966 1318 aa16.96■□□□□ 0.31
NELFE-209ENST00000488426 GCP02774 474 aa16.96■□□□□ 0.31
NELFE-209ENST00000488426 BRWD3Q6RI45 1802 aa16.96■□□□□ 0.3
NELFE-209ENST00000488426 COL14A1Q05707 1796 aaKnown RBP16.95■□□□□ 0.3
NELFE-209ENST00000488426 NLRP6P59044 892 aa16.95■□□□□ 0.3
NELFE-209ENST00000488426 GGNBP2Q9H3C7 697 aa16.95■□□□□ 0.3
NELFE-209ENST00000488426 STRN4Q9NRL3 753 aa16.95■□□□□ 0.3
NELFE-209ENST00000488426 ZRANB1Q9UGI0 708 aa16.95■□□□□ 0.3
NELFE-209ENST00000488426 TTC21BQ7Z4L5 1316 aa16.94■□□□□ 0.3
NELFE-209ENST00000488426 SPATA31A5Q5VU36 1347 aa16.93■□□□□ 0.3
NELFE-209ENST00000488426 SPATA31A7Q8IWB4 1347 aa16.93■□□□□ 0.3
NELFE-209ENST00000488426 TNNT2P45379 298 aaPredicted RBP16.93■□□□□ 0.3
NELFE-209ENST00000488426 CFAP53Q96M91 514 aa16.93■□□□□ 0.3
NELFE-209ENST00000488426 FAM182BQ5T319 152 aa16.93■□□□□ 0.3
NELFE-209ENST00000488426 GTF3C3Q9Y5Q9 886 aa16.93■□□□□ 0.3
NELFE-209ENST00000488426 CAMTA1Q9Y6Y1 1673 aa16.92■□□□□ 0.3
NELFE-209ENST00000488426 ZBTB7CA1YPR0 619 aa16.92■□□□□ 0.3
NELFE-209ENST00000488426 MTHFSP49914 203 aa16.92■□□□□ 0.3
NELFE-209ENST00000488426 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.92■□□□□ 0.3
NELFE-209ENST00000488426 ADAMTS8Q9UP79 889 aa16.92■□□□□ 0.3
NELFE-209ENST00000488426 USP35Q9P2H5 1018 aa16.91■□□□□ 0.3
NELFE-209ENST00000488426 PIK3C2AO00443 1686 aa16.91■□□□□ 0.3
NELFE-209ENST00000488426 A0A0G2JS52 829 aa16.9■□□□□ 0.3
NELFE-209ENST00000488426 SOX12O15370 315 aa16.9■□□□□ 0.3
NELFE-209ENST00000488426 LARP1Q6PKG0 1096 aaKnown RBP16.9■□□□□ 0.3
NELFE-209ENST00000488426 SPATA31A1Q5TZJ5 1347 aa16.9■□□□□ 0.3
NELFE-209ENST00000488426 CPDO75976 1380 aa16.89■□□□□ 0.29
NELFE-209ENST00000488426 KRT27Q7Z3Y8 459 aa16.89■□□□□ 0.29
NELFE-209ENST00000488426 AXIN2Q9Y2T1 843 aa16.89■□□□□ 0.29
NELFE-209ENST00000488426 EVA1CP58658 441 aa16.88■□□□□ 0.29
NELFE-209ENST00000488426 NME9Q86XW9 330 aa16.88■□□□□ 0.29
NELFE-209ENST00000488426 TTC21AQ8NDW8 1320 aa16.88■□□□□ 0.29
NELFE-209ENST00000488426 AATKQ6ZMQ8 1374 aa16.87■□□□□ 0.29
NELFE-209ENST00000488426 COL3A1P02461 1466 aaPredicted RBP16.87■□□□□ 0.29
NELFE-209ENST00000488426 COG3Q96JB2 828 aa16.86■□□□□ 0.29
NELFE-209ENST00000488426 LMO7Q8WWI1 1683 aa16.86■□□□□ 0.29
NELFE-209ENST00000488426 MAP2P11137 1827 aaKnown RBP16.86■□□□□ 0.29
NELFE-209ENST00000488426 SMG6Q86US8 1419 aaKnown RBP16.86■□□□□ 0.29
NELFE-209ENST00000488426 DEFB132Q7Z7B7 95 aa16.86■□□□□ 0.29
NELFE-209ENST00000488426 SLIT3O75094 1523 aa16.86■□□□□ 0.29
NELFE-209ENST00000488426 OVOS2A0A0J9YW53 1432 aa16.85■□□□□ 0.29
NELFE-209ENST00000488426 OVOS2Q6IE36 1432 aa16.85■□□□□ 0.29
NELFE-209ENST00000488426 PDE3BQ13370 1112 aa16.84■□□□□ 0.29
NELFE-209ENST00000488426 ARHGEF25Q86VW2 580 aa16.84■□□□□ 0.29
NELFE-209ENST00000488426 USP54Q70EL1 1684 aa16.83■□□□□ 0.29
NELFE-209ENST00000488426 NGEFQ8N5V2 710 aa16.83■□□□□ 0.28
NELFE-209ENST00000488426 COL5A2P05997 1499 aaPredicted RBP16.82■□□□□ 0.28
NELFE-209ENST00000488426 COL18A1P39060 1754 aa16.82■□□□□ 0.28
NELFE-209ENST00000488426 THSD7AQ9UPZ6 1657 aa16.82■□□□□ 0.28
NELFE-209ENST00000488426 USP31Q70CQ4 1352 aa16.82■□□□□ 0.28
NELFE-209ENST00000488426 NUDCQ9Y266 331 aa16.82■□□□□ 0.28
NELFE-209ENST00000488426 FBLN1P23142 703 aa16.81■□□□□ 0.28
NELFE-209ENST00000488426 POLKQ9UBT6 870 aa16.81■□□□□ 0.28
NELFE-209ENST00000488426 CCDC125Q86Z20 511 aa16.8■□□□□ 0.28
NELFE-209ENST00000488426 TCP11L2Q8N4U5 519 aa16.8■□□□□ 0.28
NELFE-209ENST00000488426 BARGINQ6ZT62 677 aa16.8■□□□□ 0.28
NELFE-209ENST00000488426 RGPD5Q99666 1765 aa16.79■□□□□ 0.28
NELFE-209ENST00000488426 KCNH5Q8NCM2 988 aa16.79■□□□□ 0.28
NELFE-209ENST00000488426 NFAT5O94916 1531 aa16.79■□□□□ 0.28
NELFE-209ENST00000488426 SENP3-EIF4A1A0A087X0R7 540 aa16.78■□□□□ 0.28
NELFE-209ENST00000488426 DIAPH1O60610 1272 aaKnown RBP16.78■□□□□ 0.28
NELFE-209ENST00000488426 CCDC146Q8IYE0 955 aa16.78■□□□□ 0.28
NELFE-209ENST00000488426 RUNDC1Q96C34 613 aa16.78■□□□□ 0.28
NELFE-209ENST00000488426 TOM1L2Q6ZVM7 507 aa16.77■□□□□ 0.27
NELFE-209ENST00000488426 SALL2Q9Y467 1007 aaPredicted RBP16.76■□□□□ 0.27
NELFE-209ENST00000488426 ZNF521Q96K83 1311 aa16.76■□□□□ 0.27
NELFE-209ENST00000488426 CRB1P82279 1406 aa16.76■□□□□ 0.27
NELFE-209ENST00000488426 APAF1O14727 1248 aa16.76■□□□□ 0.27
NELFE-209ENST00000488426 U2AF1L5P0DN76 240 aaPredicted RBP16.76■□□□□ 0.27
NELFE-209ENST00000488426 U2AF1Q01081 240 aaKnown RBP eCLIP16.76■□□□□ 0.27
NELFE-209ENST00000488426 NEFLP07196 543 aa16.75■□□□□ 0.27
NELFE-209ENST00000488426 NCBP3Q53F19 620 aaKnown RBP16.75■□□□□ 0.27
NELFE-209ENST00000488426 EMILIN1Q9Y6C2 1016 aa16.75■□□□□ 0.27
NELFE-209ENST00000488426 WDR17Q8IZU2 1322 aa16.74■□□□□ 0.27
NELFE-209ENST00000488426 TRIM37O94972 964 aa16.74■□□□□ 0.27
NELFE-209ENST00000488426 EN1Q05925 392 aaPredicted RBP16.74■□□□□ 0.27
NELFE-209ENST00000488426 PPM1GO15355 546 aaPredicted RBP16.73■□□□□ 0.27
NELFE-209ENST00000488426 PNNQ9H307 717 aaKnown RBP16.73■□□□□ 0.27
NELFE-209ENST00000488426 THRAP3Q9Y2W1 955 aaKnown RBP16.73■□□□□ 0.27
NELFE-209ENST00000488426 U2SURPO15042 1029 aaKnown RBP16.73■□□□□ 0.27
NELFE-209ENST00000488426 CSB-PGBD3P0DP91 1061 aa16.72■□□□□ 0.27
NELFE-209ENST00000488426 SF3B2Q13435 895 aaKnown RBP16.72■□□□□ 0.27
NELFE-209ENST00000488426 SUPT16HQ9Y5B9 1047 aaKnown RBP16.72■□□□□ 0.27
NELFE-209ENST00000488426 RRS1Q15050 365 aaKnown RBP16.71■□□□□ 0.27
NELFE-209ENST00000488426 PEAK1Q9H792 1746 aa16.71■□□□□ 0.27
NELFE-209ENST00000488426 FAM196AQ6ZSG2 479 aa16.71■□□□□ 0.27
NELFE-209ENST00000488426 GOLGA2Q08379 1002 aa16.7■□□□□ 0.26
NELFE-209ENST00000488426 PTF1AQ7RTS3 328 aa16.7■□□□□ 0.26
NELFE-209ENST00000488426 CARD10Q9BWT7 1032 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms