RNA–Protein interactions for RNA: ENST00000483409.1

SSR1-208, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 4

Gene SSR1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-208ENST00000483409 SPATA31A5Q5VU36 1347 aa18.52■□□□□ 0.56
SSR1-208ENST00000483409 SPATA31A7Q8IWB4 1347 aa18.52■□□□□ 0.56
SSR1-208ENST00000483409 LARP1Q6PKG0 1096 aaKnown RBP18.51■□□□□ 0.55
SSR1-208ENST00000483409 ABCC6O95255 1503 aa18.5■□□□□ 0.55
SSR1-208ENST00000483409 ANKRD26Q9UPS8 1709 aa18.5■□□□□ 0.55
SSR1-208ENST00000483409 FAM98CQ17RN3 349 aaKnown RBP18.5■□□□□ 0.55
SSR1-208ENST00000483409 PANK3Q9H999 370 aa18.5■□□□□ 0.55
SSR1-208ENST00000483409 USP35Q9P2H5 1018 aa18.5■□□□□ 0.55
SSR1-208ENST00000483409 AXIN2Q9Y2T1 843 aa18.5■□□□□ 0.55
SSR1-208ENST00000483409 SPATA31A1Q5TZJ5 1347 aa18.49■□□□□ 0.55
SSR1-208ENST00000483409 A0A0G2JS52 829 aa18.49■□□□□ 0.55
SSR1-208ENST00000483409 MYT1Q01538 1121 aa18.49■□□□□ 0.55
SSR1-208ENST00000483409 THSD7AQ9UPZ6 1657 aa18.48■□□□□ 0.55
SSR1-208ENST00000483409 FBLN1P23142 703 aa18.48■□□□□ 0.55
SSR1-208ENST00000483409 SEPT12Q8IYM1 358 aa18.48■□□□□ 0.55
SSR1-208ENST00000483409 CGNL1Q0VF96 1302 aa18.48■□□□□ 0.55
SSR1-208ENST00000483409 CRB1P82279 1406 aa18.47■□□□□ 0.55
SSR1-208ENST00000483409 WNK3Q9BYP7 1800 aa18.46■□□□□ 0.55
SSR1-208ENST00000483409 CCDC7Q96M83 1385 aa18.45■□□□□ 0.54
SSR1-208ENST00000483409 ONECUT3O60422 494 aaPredicted RBP18.45■□□□□ 0.54
SSR1-208ENST00000483409 MAP3K19Q56UN5 1328 aa18.45■□□□□ 0.54
SSR1-208ENST00000483409 WASHC2AQ641Q2 1341 aa18.45■□□□□ 0.54
SSR1-208ENST00000483409 WDR17Q8IZU2 1322 aa18.45■□□□□ 0.54
SSR1-208ENST00000483409 MAP2P11137 1827 aaKnown RBP18.44■□□□□ 0.54
SSR1-208ENST00000483409 CSB-PGBD3P0DP91 1061 aa18.44■□□□□ 0.54
SSR1-208ENST00000483409 TOM1L2Q6ZVM7 507 aa18.44■□□□□ 0.54
SSR1-208ENST00000483409 RRS1Q15050 365 aaKnown RBP18.43■□□□□ 0.54
SSR1-208ENST00000483409 TCP11L2Q8N4U5 519 aa18.43■□□□□ 0.54
SSR1-208ENST00000483409 EP400Q96L91 3159 aa18.43■□□□□ 0.54
SSR1-208ENST00000483409 PEAK1Q9H792 1746 aa18.43■□□□□ 0.54
SSR1-208ENST00000483409 AMPHP49418 695 aa18.42■□□□□ 0.54
SSR1-208ENST00000483409 RGPD2P0DJD1 1756 aa18.42■□□□□ 0.54
SSR1-208ENST00000483409 BLMP54132 1417 aaPredicted RBP18.41■□□□□ 0.54
SSR1-208ENST00000483409 PARP4Q9UKK3 1724 aaKnown RBP18.41■□□□□ 0.54
SSR1-208ENST00000483409 BARGINQ6ZT62 677 aa18.41■□□□□ 0.54
SSR1-208ENST00000483409 IP6K1Q92551 441 aa18.41■□□□□ 0.54
SSR1-208ENST00000483409 ERBB3P21860 1342 aa18.41■□□□□ 0.54
SSR1-208ENST00000483409 FAM208AQ9UK61 1670 aaKnown RBP18.41■□□□□ 0.54
SSR1-208ENST00000483409 KRT27Q7Z3Y8 459 aa18.4■□□□□ 0.54
SSR1-208ENST00000483409 ANKRD24Q8TF21 1146 aa18.4■□□□□ 0.54
SSR1-208ENST00000483409 UPF1Q92900 1129 aaKnown RBP eCLIP18.4■□□□□ 0.54
SSR1-208ENST00000483409 THRAP3Q9Y2W1 955 aaKnown RBP18.4■□□□□ 0.54
SSR1-208ENST00000483409 HOXC9P31274 260 aa18.39■□□□□ 0.53
SSR1-208ENST00000483409 LTV1Q96GA3 475 aaPredicted RBP18.39■□□□□ 0.53
SSR1-208ENST00000483409 KNSTRNQ9Y448 316 aa18.39■□□□□ 0.53
SSR1-208ENST00000483409 RTL1A6NKG5 1358 aa18.39■□□□□ 0.53
SSR1-208ENST00000483409 CARD10Q9BWT7 1032 aa18.38■□□□□ 0.53
SSR1-208ENST00000483409 NSD2O96028 1365 aa18.38■□□□□ 0.53
SSR1-208ENST00000483409 LRRC37A3O60309 1634 aa18.38■□□□□ 0.53
SSR1-208ENST00000483409 TNNT2P45379 298 aaPredicted RBP18.37■□□□□ 0.53
SSR1-208ENST00000483409 NLRP2Q9NX02 1062 aa18.37■□□□□ 0.53
SSR1-208ENST00000483409 EMILIN1Q9Y6C2 1016 aa18.36■□□□□ 0.53
SSR1-208ENST00000483409 FLT4P35916 1363 aa18.35■□□□□ 0.53
SSR1-208ENST00000483409 FAM182BQ5T319 152 aa18.35■□□□□ 0.53
SSR1-208ENST00000483409 PPM1GO15355 546 aaPredicted RBP18.34■□□□□ 0.53
SSR1-208ENST00000483409 HSP90AB2PQ58FF8 381 aa18.33■□□□□ 0.52
SSR1-208ENST00000483409 AMER1Q5JTC6 1135 aaPredicted RBP18.33■□□□□ 0.52
SSR1-208ENST00000483409 MORC1Q86VD1 984 aa18.33■□□□□ 0.52
SSR1-208ENST00000483409 DISP2A7MBM2 1401 aa18.32■□□□□ 0.52
SSR1-208ENST00000483409 KIF24Q5T7B8 1368 aa18.32■□□□□ 0.52
SSR1-208ENST00000483409 PER1O15534 1290 aaPredicted RBP18.32■□□□□ 0.52
SSR1-208ENST00000483409 ZEB1P37275 1124 aaPredicted RBP18.32■□□□□ 0.52
SSR1-208ENST00000483409 PDE3BQ13370 1112 aa18.32■□□□□ 0.52
SSR1-208ENST00000483409 SMG6Q86US8 1419 aaKnown RBP18.32■□□□□ 0.52
SSR1-208ENST00000483409 INSRP06213 1382 aa18.31■□□□□ 0.52
SSR1-208ENST00000483409 POLKQ9UBT6 870 aa18.31■□□□□ 0.52
SSR1-208ENST00000483409 DDB1Q16531 1140 aa18.3■□□□□ 0.52
SSR1-208ENST00000483409 CDCA7Q9BWT1 371 aaPredicted RBP18.3■□□□□ 0.52
SSR1-208ENST00000483409 RGPD1P0DJD0 1748 aa18.29■□□□□ 0.52
SSR1-208ENST00000483409 CNGB1Q14028 1251 aaPredicted RBP18.29■□□□□ 0.52
SSR1-208ENST00000483409 CC2D1BQ5T0F9 858 aaKnown RBP18.29■□□□□ 0.52
SSR1-208ENST00000483409 SBF2Q86WG5 1849 aa18.28■□□□□ 0.52
SSR1-208ENST00000483409 TNS1Q9HBL0 1735 aaKnown RBP18.27■□□□□ 0.52
SSR1-208ENST00000483409 TNS2Q63HR2 1409 aa18.27■□□□□ 0.52
SSR1-208ENST00000483409 IL2RBP14784 551 aa18.27■□□□□ 0.52
SSR1-208ENST00000483409 USHBP1Q8N6Y0 703 aa18.27■□□□□ 0.52
SSR1-208ENST00000483409 NBPF6Q5VWK0 638 aa18.26■□□□□ 0.51
SSR1-208ENST00000483409 NBPF4Q96M43 638 aa18.26■□□□□ 0.51
SSR1-208ENST00000483409 FAM196AQ6ZSG2 479 aa18.25■□□□□ 0.51
SSR1-208ENST00000483409 OVOS2A0A0G2JMS6 1433 aa18.24■□□□□ 0.51
SSR1-208ENST00000483409 KAT6BQ8WYB5 2073 aa18.24■□□□□ 0.51
SSR1-208ENST00000483409 MEGF6O75095 1541 aa18.24■□□□□ 0.51
SSR1-208ENST00000483409 EXOC5O00471 708 aa18.24■□□□□ 0.51
SSR1-208ENST00000483409 CCDC125Q86Z20 511 aa18.24■□□□□ 0.51
SSR1-208ENST00000483409 NPC1L1Q9UHC9 1359 aa18.24■□□□□ 0.51
SSR1-208ENST00000483409 SHANK3Q9BYB0 1731 aa18.23■□□□□ 0.51
SSR1-208ENST00000483409 SF3B2Q13435 895 aaKnown RBP18.23■□□□□ 0.51
SSR1-208ENST00000483409 MARCH10Q8NA82 808 aaPredicted RBP18.23■□□□□ 0.51
SSR1-208ENST00000483409 TRIM37O94972 964 aa18.22■□□□□ 0.51
SSR1-208ENST00000483409 EIF4A2Q14240 407 aaKnown RBP18.21■□□□□ 0.51
SSR1-208ENST00000483409 DEFB132Q7Z7B7 95 aa18.2■□□□□ 0.5
SSR1-208ENST00000483409 NCAPD2Q15021 1401 aa18.19■□□□□ 0.5
SSR1-208ENST00000483409 EYA1Q99502 592 aa18.19■□□□□ 0.5
SSR1-208ENST00000483409 MTHFSP49914 203 aa18.18■□□□□ 0.5
SSR1-208ENST00000483409 RAPGEF4Q8WZA2 1011 aa18.18■□□□□ 0.5
SSR1-208ENST00000483409 TATP17735 454 aaPredicted RBP18.17■□□□□ 0.5
SSR1-208ENST00000483409 DDX54Q8TDD1 881 aaKnown RBP18.17■□□□□ 0.5
SSR1-208ENST00000483409 PKD1L3Q7Z443 1732 aa18.17■□□□□ 0.5
SSR1-208ENST00000483409 NHSQ6T4R5 1651 aa18.16■□□□□ 0.5
SSR1-208ENST00000483409 BAG6P46379 1132 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms