RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 IP6K1Q92551 441 aa23.41■■□□□ 1.34
UPF3A-206ENST00000480362 RTL1A6NKG5 1358 aa23.4■■□□□ 1.34
UPF3A-206ENST00000480362 EIF4A2Q14240 407 aaKnown RBP23.4■■□□□ 1.34
UPF3A-206ENST00000480362 COL16A1Q07092 1604 aaPredicted RBP23.4■■□□□ 1.34
UPF3A-206ENST00000480362 HAP1P54257 671 aaPredicted RBP23.39■■□□□ 1.33
UPF3A-206ENST00000480362 BLMP54132 1417 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-206ENST00000480362 CCDC146Q8IYE0 955 aa23.36■■□□□ 1.33
UPF3A-206ENST00000480362 CPDO75976 1380 aa23.35■■□□□ 1.33
UPF3A-206ENST00000480362 ABCA3Q99758 1704 aa23.34■■□□□ 1.33
UPF3A-206ENST00000480362 SENP3-EIF4A1A0A087X0R7 540 aa23.34■■□□□ 1.33
UPF3A-206ENST00000480362 LTV1Q96GA3 475 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-206ENST00000480362 KIAA0232Q92628 1395 aa23.34■■□□□ 1.33
UPF3A-206ENST00000480362 COL22A1Q8NFW1 1626 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-206ENST00000480362 AXIN2Q9Y2T1 843 aa23.33■■□□□ 1.33
UPF3A-206ENST00000480362 CHRNA2Q15822 529 aa23.32■■□□□ 1.32
UPF3A-206ENST00000480362 RUNDC1Q96C34 613 aa23.32■■□□□ 1.32
UPF3A-206ENST00000480362 FCHSD2O94868 740 aa23.31■■□□□ 1.32
UPF3A-206ENST00000480362 HMOX1P09601 288 aa23.31■■□□□ 1.32
UPF3A-206ENST00000480362 PRDM11Q9NQV5 511 aa23.31■■□□□ 1.32
UPF3A-206ENST00000480362 FBXO41Q8TF61 875 aa23.3■■□□□ 1.32
UPF3A-206ENST00000480362 PNNQ9H307 717 aaKnown RBP23.3■■□□□ 1.32
UPF3A-206ENST00000480362 COL18A1P39060 1754 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 ANKRD24Q8TF21 1146 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 EYA1Q99502 592 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 RSPH6AQ9H0K4 717 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 RGPD1P0DJD0 1748 aa23.28■■□□□ 1.32
UPF3A-206ENST00000480362 SULT6B1Q6IMI4 303 aa23.28■■□□□ 1.32
UPF3A-206ENST00000480362 PLEKHF1Q96S99 279 aa23.28■■□□□ 1.32
UPF3A-206ENST00000480362 RGPD5Q99666 1765 aa23.27■■□□□ 1.32
UPF3A-206ENST00000480362 APAF1O14727 1248 aa23.27■■□□□ 1.32
UPF3A-206ENST00000480362 ABCC6O95255 1503 aa23.27■■□□□ 1.32
UPF3A-206ENST00000480362 PRKAR2BP31323 418 aa23.26■■□□□ 1.31
UPF3A-206ENST00000480362 AEBP1Q8IUX7 1158 aa23.26■■□□□ 1.31
UPF3A-206ENST00000480362 SALL2Q9Y467 1007 aaPredicted RBP23.26■■□□□ 1.31
UPF3A-206ENST00000480362 IGSF1Q8N6C5 1336 aa23.26■■□□□ 1.31
UPF3A-206ENST00000480362 FAM83GA6ND36 823 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 HSPA1LP34931 641 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 ZBED9Q6R2W3 1325 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 JCADQ9P266 1359 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 TCP11L2Q8N4U5 519 aa23.24■■□□□ 1.31
UPF3A-206ENST00000480362 NUTM2BA6NNL0 878 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NUTM2EB1AL46 878 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NBPF6Q5VWK0 638 aa23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NUTM2AQ8IVF1 878 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NBPF4Q96M43 638 aa23.23■■□□□ 1.31
UPF3A-206ENST00000480362 MAPK8IP3Q9UPT6 1336 aa23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NEFMP07197 916 aa23.22■■□□□ 1.31
UPF3A-206ENST00000480362 ERBB3P21860 1342 aa23.22■■□□□ 1.31
UPF3A-206ENST00000480362 USHBP1Q8N6Y0 703 aa23.21■■□□□ 1.31
UPF3A-206ENST00000480362 CAMTA1Q9Y6Y1 1673 aa23.21■■□□□ 1.31
UPF3A-206ENST00000480362 LMO7Q8WWI1 1683 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 KDRP35968 1356 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 CENPBP07199 599 aaPredicted RBP23.2■■□□□ 1.3
UPF3A-206ENST00000480362 CSB-PGBD3P0DP91 1061 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 PHACTR3Q96KR7 559 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 RRP7AQ9Y3A4 280 aaKnown RBP23.2■■□□□ 1.3
UPF3A-206ENST00000480362 RGPD2P0DJD1 1756 aa23.19■■□□□ 1.3
UPF3A-206ENST00000480362 ADAMTS2O95450 1211 aa23.19■■□□□ 1.3
UPF3A-206ENST00000480362 NEUROD2Q15784 382 aa23.18■■□□□ 1.3
UPF3A-206ENST00000480362 ILDR1Q86SU0 546 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-206ENST00000480362 NGEFQ8N5V2 710 aa23.18■■□□□ 1.3
UPF3A-206ENST00000480362 TMPOP42166 694 aaKnown RBP23.17■■□□□ 1.3
UPF3A-206ENST00000480362 NLRP2Q9NX02 1062 aa23.17■■□□□ 1.3
UPF3A-206ENST00000480362 COL14A1Q05707 1796 aaKnown RBP23.17■■□□□ 1.3
UPF3A-206ENST00000480362 EVA1CP58658 441 aa23.16■■□□□ 1.3
UPF3A-206ENST00000480362 BTG4Q9NY30 223 aa23.15■■□□□ 1.3
UPF3A-206ENST00000480362 COL5A2P05997 1499 aaPredicted RBP23.15■■□□□ 1.3
UPF3A-206ENST00000480362 SPATA31A6Q5VVP1 1343 aa23.14■■□□□ 1.3
UPF3A-206ENST00000480362 WDR17Q8IZU2 1322 aa23.14■■□□□ 1.3
UPF3A-206ENST00000480362 NFE2L2Q16236 605 aa23.14■■□□□ 1.29
UPF3A-206ENST00000480362 NCBP3Q53F19 620 aaKnown RBP23.14■■□□□ 1.29
UPF3A-206ENST00000480362 STRN4Q9NRL3 753 aa23.14■■□□□ 1.29
UPF3A-206ENST00000480362 NCAPD2Q15021 1401 aa23.14■■□□□ 1.29
UPF3A-206ENST00000480362 RIPK4P57078 832 aa23.13■■□□□ 1.29
UPF3A-206ENST00000480362 FAM208AQ9UK61 1670 aaKnown RBP23.13■■□□□ 1.29
UPF3A-206ENST00000480362 TOM1L2Q6ZVM7 507 aa23.12■■□□□ 1.29
UPF3A-206ENST00000480362 CCDC27Q2M243 656 aa23.11■■□□□ 1.29
UPF3A-206ENST00000480362 WWC1Q8IX03 1113 aa23.11■■□□□ 1.29
UPF3A-206ENST00000480362 ZNF521Q96K83 1311 aa23.1■■□□□ 1.29
UPF3A-206ENST00000480362 LARP1Q6PKG0 1096 aaKnown RBP23.1■■□□□ 1.29
UPF3A-206ENST00000480362 PDE3BQ13370 1112 aa23.09■■□□□ 1.29
UPF3A-206ENST00000480362 MTHFSDQ2M296 383 aaKnown RBP23.09■■□□□ 1.29
UPF3A-206ENST00000480362 PHF23Q9BUL5 403 aaPredicted RBP23.09■■□□□ 1.29
UPF3A-206ENST00000480362 TRIM35Q9UPQ4 493 aa23.09■■□□□ 1.29
UPF3A-206ENST00000480362 CARD10Q9BWT7 1032 aa23.08■■□□□ 1.29
UPF3A-206ENST00000480362 PLCH1Q4KWH8 1693 aa23.07■■□□□ 1.28
UPF3A-206ENST00000480362 GOLGA2Q08379 1002 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 GAS2L2Q8NHY3 880 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 RAPGEF4Q8WZA2 1011 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 CDCA7LQ96GN5 454 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 LRP6O75581 1613 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 TATP17735 454 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-206ENST00000480362 PLEKHO1Q53GL0 409 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-206ENST00000480362 WDR63Q8IWG1 891 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 NGLY1Q96IV0 654 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 C8orf37Q96NL8 207 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 CRB1P82279 1406 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 LMOD3Q0VAK6 560 aa23.03■■□□□ 1.28
UPF3A-206ENST00000480362 AMOTQ4VCS5 1084 aa23.03■■□□□ 1.28
UPF3A-206ENST00000480362 DLG5Q8TDM6 1919 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms