RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 TBC1D9Q6ZT07 1266 aa9.33□□□□□ -0.92
UPF3A-205ENST00000479712 MTRQ99707 1265 aa9.33□□□□□ -0.92
UPF3A-205ENST00000479712 MAFBQ9Y5Q3 323 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-205ENST00000479712 TSPOAP1O95153 1857 aa9.32□□□□□ -0.92
UPF3A-205ENST00000479712 ATP9BO43861 1147 aa9.32□□□□□ -0.92
UPF3A-205ENST00000479712 CSB-PGBD3P0DP91 1061 aa9.32□□□□□ -0.92
UPF3A-205ENST00000479712 PTK2Q05397 1052 aa9.32□□□□□ -0.92
UPF3A-205ENST00000479712 NBPF14Q5TI25 921 aa9.32□□□□□ -0.92
UPF3A-205ENST00000479712 AEBP1Q8IUX7 1158 aa9.32□□□□□ -0.92
UPF3A-205ENST00000479712 GPKOWQ92917 476 aaPredicted RBP eCLIP9.32□□□□□ -0.92
UPF3A-205ENST00000479712 GPSM3Q9Y4H4 160 aa9.32□□□□□ -0.92
UPF3A-205ENST00000479712 PDXDC2PQ6P474 469 aa9.31□□□□□ -0.92
UPF3A-205ENST00000479712 USTQ9Y2C2 406 aa9.3□□□□□ -0.92
UPF3A-205ENST00000479712 PIK3CDO00329 1044 aa9.29□□□□□ -0.92
UPF3A-205ENST00000479712 CDCA8Q53HL2 280 aa9.29□□□□□ -0.92
UPF3A-205ENST00000479712 CCDC24Q8N4L8 307 aa9.29□□□□□ -0.92
UPF3A-205ENST00000479712 ZNF592Q92610 1267 aa9.29□□□□□ -0.92
UPF3A-205ENST00000479712 IL21Q9HBE4 155 aa9.29□□□□□ -0.92
UPF3A-205ENST00000479712 SYNJ1O43426 1573 aa9.29□□□□□ -0.92
UPF3A-205ENST00000479712 NFATC2IPQ8NCF5 419 aa9.28□□□□□ -0.92
UPF3A-205ENST00000479712 SLC6A16Q9GZN6 736 aa9.28□□□□□ -0.92
UPF3A-205ENST00000479712 UNC93B1Q9H1C4 597 aa9.28□□□□□ -0.92
UPF3A-205ENST00000479712 SKIP12755 728 aa9.27□□□□□ -0.93
UPF3A-205ENST00000479712 TJAP1Q5JTD0 557 aa9.27□□□□□ -0.93
UPF3A-205ENST00000479712 OCSTAMPQ9BR26 566 aa9.27□□□□□ -0.93
UPF3A-205ENST00000479712 ARHGAP9Q9BRR9 750 aa9.27□□□□□ -0.93
UPF3A-205ENST00000479712 PCDHB9Q9Y5E1 797 aa9.27□□□□□ -0.93
UPF3A-205ENST00000479712 ATG7O95352 703 aa9.26□□□□□ -0.93
UPF3A-205ENST00000479712 MCCD1P59942 119 aaPredicted RBP9.26□□□□□ -0.93
UPF3A-205ENST00000479712 ZNF516Q92618 1163 aa9.26□□□□□ -0.93
UPF3A-205ENST00000479712 VRTNQ9H8Y1 702 aa9.26□□□□□ -0.93
UPF3A-205ENST00000479712 ABCC10Q5T3U5 1492 aa9.26□□□□□ -0.93
UPF3A-205ENST00000479712 SLFNL1Q499Z3 407 aa9.25□□□□□ -0.93
UPF3A-205ENST00000479712 PTCRAQ6ISU1 281 aaPredicted RBP9.25□□□□□ -0.93
UPF3A-205ENST00000479712 ADAM32Q8TC27 787 aa9.25□□□□□ -0.93
UPF3A-205ENST00000479712 CEP126Q9P2H0 1117 aa9.25□□□□□ -0.93
UPF3A-205ENST00000479712 DIP2BQ9P265 1576 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 USP17L3A6NCW0 530 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 USP17L4A6NCW7 530 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 USP17L5A8MUK1 530 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 USP17L2Q6R6M4 530 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 USP17L1Q7RTZ2 530 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 ZBTB33Q86T24 672 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 FAM174AQ8TBP5 190 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 PEG3Q9GZU2 1588 aa9.24□□□□□ -0.93
UPF3A-205ENST00000479712 KANK4Q5T7N3 995 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-205ENST00000479712 SH3BP5LQ7L8J4 393 aa9.23□□□□□ -0.93
UPF3A-205ENST00000479712 PLEKHM2Q8IWE5 1019 aa9.23□□□□□ -0.93
UPF3A-205ENST00000479712 S1PR4O95977 384 aa9.22□□□□□ -0.93
UPF3A-205ENST00000479712 RNF135Q8IUD6 432 aa9.22□□□□□ -0.93
UPF3A-205ENST00000479712 CCDC9Q9Y3X0 531 aaKnown RBP9.22□□□□□ -0.93
UPF3A-205ENST00000479712 CARNS1A5YM72 827 aa9.21□□□□□ -0.94
UPF3A-205ENST00000479712 BRD1O95696 1058 aa9.21□□□□□ -0.94
UPF3A-205ENST00000479712 ITGBL1O95965 494 aaPredicted RBP9.21□□□□□ -0.94
UPF3A-205ENST00000479712 DEPDC4Q8N2C3 294 aa9.21□□□□□ -0.94
UPF3A-205ENST00000479712 CARD14Q9BXL6 1004 aa9.21□□□□□ -0.94
UPF3A-205ENST00000479712 MAGEB6P1A0A0J9YX57 407 aa9.2□□□□□ -0.94
UPF3A-205ENST00000479712 PATL2C9JE40 543 aaKnown RBP9.2□□□□□ -0.94
UPF3A-205ENST00000479712 DZIP3Q86Y13 1208 aaKnown RBP9.2□□□□□ -0.94
UPF3A-205ENST00000479712 NKX2-3Q8TAU0 364 aa9.2□□□□□ -0.94
UPF3A-205ENST00000479712 CHMP7Q8WUX9 453 aaPredicted RBP9.2□□□□□ -0.94
UPF3A-205ENST00000479712 BAP1Q92560 729 aa9.2□□□□□ -0.94
UPF3A-205ENST00000479712 FCF1Q9Y324 198 aaKnown RBP9.2□□□□□ -0.94
UPF3A-205ENST00000479712 SNAPC4Q5SXM2 1469 aa9.2□□□□□ -0.94
UPF3A-205ENST00000479712 TMEM88BA6NKF7 163 aa9.19□□□□□ -0.94
UPF3A-205ENST00000479712 ELOAQ14241 798 aaKnown RBP9.19□□□□□ -0.94
UPF3A-205ENST00000479712 AGERQ15109 404 aa9.19□□□□□ -0.94
UPF3A-205ENST00000479712 Q6ZNB5 142 aa9.19□□□□□ -0.94
UPF3A-205ENST00000479712 SH3RF1Q7Z6J0 888 aa9.19□□□□□ -0.94
UPF3A-205ENST00000479712 PHTF2Q8N3S3 785 aa9.19□□□□□ -0.94
UPF3A-205ENST00000479712 PLPP7Q8NBV4 271 aa9.19□□□□□ -0.94
UPF3A-205ENST00000479712 KCNA1Q09470 495 aa9.18□□□□□ -0.94
UPF3A-205ENST00000479712 NCOA4Q13772 614 aa9.18□□□□□ -0.94
UPF3A-205ENST00000479712 LINC01559Q495D7 138 aa9.18□□□□□ -0.94
UPF3A-205ENST00000479712 BPHLQ86WA6 291 aaPredicted RBP9.18□□□□□ -0.94
UPF3A-205ENST00000479712 ZNF511Q8NB15 262 aa9.18□□□□□ -0.94
UPF3A-205ENST00000479712 MKRN1Q9UHC7 482 aaKnown RBP9.18□□□□□ -0.94
UPF3A-205ENST00000479712 MAP7D1Q3KQU3 841 aa9.17□□□□□ -0.94
UPF3A-205ENST00000479712 NOVA2Q9UNW9 492 aaKnown RBP9.17□□□□□ -0.94
UPF3A-205ENST00000479712 FAM196BA6NMK8 535 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L15C9J2P7 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L10C9JJH3 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L13C9JLJ4 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L12C9JPN9 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L11C9JVI0 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L21D6R901 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L18D6R9N7 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L22D6RA61 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L17D6RBQ6 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L19D6RCP7 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L20D6RJB6 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 ATP5J2-PTCD1G3V325 749 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 LZTS3O60299 673 aaPredicted RBP9.16□□□□□ -0.94
UPF3A-205ENST00000479712 USP17L24Q0WX57 530 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 FOXJ1Q92949 421 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 GZF1Q9H116 711 aaPredicted RBP9.16□□□□□ -0.94
UPF3A-205ENST00000479712 ZMIZ1Q9ULJ6 1067 aa9.16□□□□□ -0.94
UPF3A-205ENST00000479712 CFTRP13569 1480 aa9.15□□□□□ -0.94
UPF3A-205ENST00000479712 EML3Q32P44 896 aa9.15□□□□□ -0.94
UPF3A-205ENST00000479712 ERFEQ4G0M1 354 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms