RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 ZEB1P37275 1124 aaPredicted RBP21.32■■□□□ 1
C9orf3-217ENST00000479161 BARGINQ6ZT62 677 aa21.32■■□□□ 1
C9orf3-217ENST00000479161 AXIN2Q9Y2T1 843 aa21.32■■□□□ 1
C9orf3-217ENST00000479161 RGPD5Q99666 1765 aa21.32■■□□□ 1
C9orf3-217ENST00000479161 KIF24Q5T7B8 1368 aa21.32■■□□□ 1
C9orf3-217ENST00000479161 BLMP54132 1417 aaPredicted RBP21.31■■□□□ 1
C9orf3-217ENST00000479161 POLR3GLQ9BT43 218 aa21.31■■□□□ 1
C9orf3-217ENST00000479161 CCDC9Q9Y3X0 531 aaKnown RBP21.31■■□□□ 1
C9orf3-217ENST00000479161 NSD2O96028 1365 aa21.31■■□□□ 1
C9orf3-217ENST00000479161 CCDC7Q96M83 1385 aa21.31■■□□□ 1
C9orf3-217ENST00000479161 WDR17Q8IZU2 1322 aa21.3■■□□□ 1
C9orf3-217ENST00000479161 CRB1P82279 1406 aa21.3■■□□□ 1
C9orf3-217ENST00000479161 ANKRD26Q9UPS8 1709 aa21.3■■□□□ 1
C9orf3-217ENST00000479161 GGNBP2Q9H3C7 697 aa21.3■■□□□ 1
C9orf3-217ENST00000479161 STRN4Q9NRL3 753 aa21.3■■□□□ 1
C9orf3-217ENST00000479161 LARP1Q6PKG0 1096 aaKnown RBP21.29■■□□□ 1
C9orf3-217ENST00000479161 IP6K1Q92551 441 aa21.29■■□□□ 1
C9orf3-217ENST00000479161 THSD7AQ9UPZ6 1657 aa21.28■■□□□ 1
C9orf3-217ENST00000479161 RTL1A6NKG5 1358 aa21.28■■□□□ 1
C9orf3-217ENST00000479161 WASHC2AQ641Q2 1341 aa21.28■■□□□ 1
C9orf3-217ENST00000479161 SOX12O15370 315 aa21.27■■□□□ 1
C9orf3-217ENST00000479161 SEPT12Q8IYM1 358 aa21.27■■□□□ 1
C9orf3-217ENST00000479161 TCP11L2Q8N4U5 519 aa21.27■■□□□ 1
C9orf3-217ENST00000479161 BRWD3Q6RI45 1802 aa21.27■□□□□ 0.99
C9orf3-217ENST00000479161 CARD10Q9BWT7 1032 aa21.26■□□□□ 0.99
C9orf3-217ENST00000479161 ERBB3P21860 1342 aa21.26■□□□□ 0.99
C9orf3-217ENST00000479161 MAP3K19Q56UN5 1328 aa21.26■□□□□ 0.99
C9orf3-217ENST00000479161 KNSTRNQ9Y448 316 aa21.25■□□□□ 0.99
C9orf3-217ENST00000479161 FAM208AQ9UK61 1670 aaKnown RBP21.24■□□□□ 0.99
C9orf3-217ENST00000479161 PER1O15534 1290 aaPredicted RBP21.24■□□□□ 0.99
C9orf3-217ENST00000479161 FAM98CQ17RN3 349 aaKnown RBP21.24■□□□□ 0.99
C9orf3-217ENST00000479161 CDCA7Q9BWT1 371 aaPredicted RBP21.24■□□□□ 0.99
C9orf3-217ENST00000479161 ZBTB7CA1YPR0 619 aa21.23■□□□□ 0.99
C9orf3-217ENST00000479161 NPC1L1Q9UHC9 1359 aa21.23■□□□□ 0.99
C9orf3-217ENST00000479161 MAP2P11137 1827 aaKnown RBP21.22■□□□□ 0.99
C9orf3-217ENST00000479161 HOXC9P31274 260 aa21.22■□□□□ 0.99
C9orf3-217ENST00000479161 TOM1L2Q6ZVM7 507 aa21.22■□□□□ 0.99
C9orf3-217ENST00000479161 PARP4Q9UKK3 1724 aaKnown RBP21.21■□□□□ 0.99
C9orf3-217ENST00000479161 EP400Q96L91 3159 aa21.21■□□□□ 0.99
C9orf3-217ENST00000479161 AMPHP49418 695 aa21.21■□□□□ 0.99
C9orf3-217ENST00000479161 AMER1Q5JTC6 1135 aaPredicted RBP21.21■□□□□ 0.99
C9orf3-217ENST00000479161 KRT27Q7Z3Y8 459 aa21.2■□□□□ 0.98
C9orf3-217ENST00000479161 FLT4P35916 1363 aa21.2■□□□□ 0.98
C9orf3-217ENST00000479161 CCDC125Q86Z20 511 aa21.19■□□□□ 0.98
C9orf3-217ENST00000479161 ANKRD24Q8TF21 1146 aa21.19■□□□□ 0.98
C9orf3-217ENST00000479161 UPF1Q92900 1129 aaKnown RBP eCLIP21.19■□□□□ 0.98
C9orf3-217ENST00000479161 INSRP06213 1382 aa21.19■□□□□ 0.98
C9orf3-217ENST00000479161 WNK3Q9BYP7 1800 aa21.18■□□□□ 0.98
C9orf3-217ENST00000479161 CSB-PGBD3P0DP91 1061 aa21.18■□□□□ 0.98
C9orf3-217ENST00000479161 FBLN1P23142 703 aa21.17■□□□□ 0.98
C9orf3-217ENST00000479161 RRS1Q15050 365 aaKnown RBP21.17■□□□□ 0.98
C9orf3-217ENST00000479161 USP35Q9P2H5 1018 aa21.17■□□□□ 0.98
C9orf3-217ENST00000479161 DISP2A7MBM2 1401 aa21.16■□□□□ 0.98
C9orf3-217ENST00000479161 POLKQ9UBT6 870 aa21.15■□□□□ 0.98
C9orf3-217ENST00000479161 PEAK1Q9H792 1746 aa21.15■□□□□ 0.98
C9orf3-217ENST00000479161 SMG6Q86US8 1419 aaKnown RBP21.13■□□□□ 0.97
C9orf3-217ENST00000479161 A0A0G2JS52 829 aa21.13■□□□□ 0.97
C9orf3-217ENST00000479161 MYT1Q01538 1121 aa21.13■□□□□ 0.97
C9orf3-217ENST00000479161 MORC1Q86VD1 984 aa21.13■□□□□ 0.97
C9orf3-217ENST00000479161 NLRP2Q9NX02 1062 aa21.12■□□□□ 0.97
C9orf3-217ENST00000479161 PDE3BQ13370 1112 aa21.11■□□□□ 0.97
C9orf3-217ENST00000479161 HSP90AB2PQ58FF8 381 aa21.11■□□□□ 0.97
C9orf3-217ENST00000479161 EMILIN1Q9Y6C2 1016 aa21.11■□□□□ 0.97
C9orf3-217ENST00000479161 BCL9O00512 1426 aa21.11■□□□□ 0.97
C9orf3-217ENST00000479161 DDB1Q16531 1140 aa21.1■□□□□ 0.97
C9orf3-217ENST00000479161 FAM196AQ6ZSG2 479 aa21.1■□□□□ 0.97
C9orf3-217ENST00000479161 LRRC37A3O60309 1634 aa21.1■□□□□ 0.97
C9orf3-217ENST00000479161 IL2RBP14784 551 aa21.09■□□□□ 0.97
C9orf3-217ENST00000479161 NCAPD2Q15021 1401 aa21.08■□□□□ 0.97
C9orf3-217ENST00000479161 RGPD2P0DJD1 1756 aa21.08■□□□□ 0.96
C9orf3-217ENST00000479161 EXOC5O00471 708 aa21.07■□□□□ 0.96
C9orf3-217ENST00000479161 TNS2Q63HR2 1409 aa21.06■□□□□ 0.96
C9orf3-217ENST00000479161 PLEKHG2Q9H7P9 1386 aa21.06■□□□□ 0.96
C9orf3-217ENST00000479161 SRCAPQ6ZRS2 3230 aa21.06■□□□□ 0.96
C9orf3-217ENST00000479161 NBPF6Q5VWK0 638 aa21.05■□□□□ 0.96
C9orf3-217ENST00000479161 LTV1Q96GA3 475 aaPredicted RBP21.05■□□□□ 0.96
C9orf3-217ENST00000479161 NBPF4Q96M43 638 aa21.05■□□□□ 0.96
C9orf3-217ENST00000479161 RGPD1P0DJD0 1748 aa21.04■□□□□ 0.96
C9orf3-217ENST00000479161 OVOS2A0A0G2JMS6 1433 aa21.04■□□□□ 0.96
C9orf3-217ENST00000479161 PPM1GO15355 546 aaPredicted RBP21.03■□□□□ 0.96
C9orf3-217ENST00000479161 TNNT2P45379 298 aaPredicted RBP21.03■□□□□ 0.96
C9orf3-217ENST00000479161 SBF2Q86WG5 1849 aa21.01■□□□□ 0.95
C9orf3-217ENST00000479161 CC2D1BQ5T0F9 858 aaKnown RBP21■□□□□ 0.95
C9orf3-217ENST00000479161 MARCH10Q8NA82 808 aaPredicted RBP21■□□□□ 0.95
C9orf3-217ENST00000479161 SF3B2Q13435 895 aaKnown RBP20.99■□□□□ 0.95
C9orf3-217ENST00000479161 EIF4A2Q14240 407 aaKnown RBP20.99■□□□□ 0.95
C9orf3-217ENST00000479161 RAPGEF4Q8WZA2 1011 aa20.98■□□□□ 0.95
C9orf3-217ENST00000479161 EYA1Q99502 592 aa20.98■□□□□ 0.95
C9orf3-217ENST00000479161 MTHFSP49914 203 aa20.97■□□□□ 0.95
C9orf3-217ENST00000479161 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.97■□□□□ 0.95
C9orf3-217ENST00000479161 TNS1Q9HBL0 1735 aaKnown RBP20.97■□□□□ 0.95
C9orf3-217ENST00000479161 IGSF1Q8N6C5 1336 aa20.97■□□□□ 0.95
C9orf3-217ENST00000479161 MEGF6O75095 1541 aa20.96■□□□□ 0.95
C9orf3-217ENST00000479161 FAM182BQ5T319 152 aa20.96■□□□□ 0.95
C9orf3-217ENST00000479161 ZCRB1Q8TBF4 217 aaKnown RBP20.96■□□□□ 0.95
C9orf3-217ENST00000479161 TATP17735 454 aaPredicted RBP20.95■□□□□ 0.94
C9orf3-217ENST00000479161 BAG6P46379 1132 aa20.94■□□□□ 0.94
C9orf3-217ENST00000479161 SHANK3Q9BYB0 1731 aa20.94■□□□□ 0.94
C9orf3-217ENST00000479161 PKD1L3Q7Z443 1732 aa20.93■□□□□ 0.94
C9orf3-217ENST00000479161 IL13P35225 146 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms