RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 ARHGEF15O94989 841 aa12.46□□□□□ -0.41
SCN9A-206ENST00000472119 SLURP2P0DP57 97 aa12.46□□□□□ -0.41
SCN9A-206ENST00000472119 HAP1P54257 671 aaPredicted RBP12.46□□□□□ -0.41
SCN9A-206ENST00000472119 DIXDC1Q155Q3 683 aa12.46□□□□□ -0.41
SCN9A-206ENST00000472119 CSPP1Q1MSJ5 1256 aa12.46□□□□□ -0.41
SCN9A-206ENST00000472119 KANK3Q6NY19 840 aa12.46□□□□□ -0.41
SCN9A-206ENST00000472119 CABLES1Q8TDN4 633 aa12.46□□□□□ -0.41
SCN9A-206ENST00000472119 CBLBQ13191 982 aa12.45□□□□□ -0.42
SCN9A-206ENST00000472119 ARMC2Q8NEN0 867 aa12.45□□□□□ -0.42
SCN9A-206ENST00000472119 KDM2AQ9Y2K7 1162 aa12.45□□□□□ -0.42
SCN9A-206ENST00000472119 FOXK2Q01167 660 aa12.44□□□□□ -0.42
SCN9A-206ENST00000472119 SH3RF1Q7Z6J0 888 aa12.44□□□□□ -0.42
SCN9A-206ENST00000472119 SLC35F4A4IF30 521 aa12.43□□□□□ -0.42
SCN9A-206ENST00000472119 ITGA6P23229 1130 aa12.43□□□□□ -0.42
SCN9A-206ENST00000472119 SV2AQ7L0J3 742 aa12.43□□□□□ -0.42
SCN9A-206ENST00000472119 SCARF2Q96GP6 870 aaPredicted RBP12.43□□□□□ -0.42
SCN9A-206ENST00000472119 EIF4G1Q04637 1599 aaKnown RBP12.43□□□□□ -0.42
SCN9A-206ENST00000472119 AMHR2Q16671 573 aa12.42□□□□□ -0.42
SCN9A-206ENST00000472119 NBPF14Q5TI25 921 aa12.42□□□□□ -0.42
SCN9A-206ENST00000472119 TRMT44Q8IYL2 757 aaKnown RBP12.42□□□□□ -0.42
SCN9A-206ENST00000472119 CARD14Q9BXL6 1004 aa12.42□□□□□ -0.42
SCN9A-206ENST00000472119 SPINT1O43278 529 aa12.41□□□□□ -0.42
SCN9A-206ENST00000472119 PRPF38BQ5VTL8 546 aaKnown RBP12.41□□□□□ -0.42
SCN9A-206ENST00000472119 PGPEP1Q9NXJ5 209 aa12.41□□□□□ -0.42
SCN9A-206ENST00000472119 PPP1R26Q5T8A7 1209 aaPredicted RBP12.4□□□□□ -0.42
SCN9A-206ENST00000472119 RIC3Q7Z5B4 369 aa12.4□□□□□ -0.42
SCN9A-206ENST00000472119 CECR2Q9BXF3 1484 aa12.4□□□□□ -0.43
SCN9A-206ENST00000472119 SH3BP5LQ7L8J4 393 aa12.39□□□□□ -0.43
SCN9A-206ENST00000472119 Q6ZVU0 165 aa12.38□□□□□ -0.43
SCN9A-206ENST00000472119 NUTM2BA6NNL0 878 aaPredicted RBP12.36□□□□□ -0.43
SCN9A-206ENST00000472119 NUTM2EB1AL46 878 aaPredicted RBP12.36□□□□□ -0.43
SCN9A-206ENST00000472119 ADAMTS2O95450 1211 aa12.36□□□□□ -0.43
SCN9A-206ENST00000472119 MAP3K10Q02779 954 aa12.36□□□□□ -0.43
SCN9A-206ENST00000472119 XP32Q5T750 250 aa12.36□□□□□ -0.43
SCN9A-206ENST00000472119 NUTM2DQ5VT03 806 aaPredicted RBP12.36□□□□□ -0.43
SCN9A-206ENST00000472119 LYPD4Q6UWN0 246 aa12.36□□□□□ -0.43
SCN9A-206ENST00000472119 NUTM2AQ8IVF1 878 aaPredicted RBP12.36□□□□□ -0.43
SCN9A-206ENST00000472119 CC2D2AQ9P2K1 1620 aa12.36□□□□□ -0.43
SCN9A-206ENST00000472119 CTSOP43234 321 aaPredicted RBP12.35□□□□□ -0.43
SCN9A-206ENST00000472119 AGBL1Q96MI9 1066 aa12.35□□□□□ -0.43
SCN9A-206ENST00000472119 ERFEQ4G0M1 354 aa12.34□□□□□ -0.43
SCN9A-206ENST00000472119 RELBQ01201 579 aa12.33□□□□□ -0.44
SCN9A-206ENST00000472119 BARGINQ6ZT62 677 aa12.33□□□□□ -0.44
SCN9A-206ENST00000472119 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.33□□□□□ -0.44
SCN9A-206ENST00000472119 INSM2Q96T92 566 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-206ENST00000472119 POLMQ9NP87 494 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-206ENST00000472119 QPCTQ16769 361 aa12.31□□□□□ -0.44
SCN9A-206ENST00000472119 PARP9Q8IXQ6 854 aa12.31□□□□□ -0.44
SCN9A-206ENST00000472119 MSTNO14793 375 aa12.29□□□□□ -0.44
SCN9A-206ENST00000472119 CELA2BP08218 269 aaPredicted RBP12.29□□□□□ -0.44
SCN9A-206ENST00000472119 SRSF11Q05519 484 aaKnown RBP12.29□□□□□ -0.44
SCN9A-206ENST00000472119 HELBQ8NG08 1087 aaPredicted RBP12.29□□□□□ -0.44
SCN9A-206ENST00000472119 LIMD1Q9UGP4 676 aa12.29□□□□□ -0.44
SCN9A-206ENST00000472119 ADAM23O75077 832 aa12.28□□□□□ -0.44
SCN9A-206ENST00000472119 PLA2G4EQ3MJ16 856 aa12.28□□□□□ -0.44
SCN9A-206ENST00000472119 KCTD15Q96SI1 283 aaPredicted RBP12.28□□□□□ -0.44
SCN9A-206ENST00000472119 BAZ1AQ9NRL2 1556 aaPredicted RBP12.27□□□□□ -0.44
SCN9A-206ENST00000472119 SMARCA4P51532 1647 aa12.27□□□□□ -0.44
SCN9A-206ENST00000472119 DHX9Q08211 1270 aaKnown RBP12.27□□□□□ -0.45
SCN9A-206ENST00000472119 RNF217Q8TC41 542 aa12.27□□□□□ -0.45
SCN9A-206ENST00000472119 GPKOWQ92917 476 aaPredicted RBP eCLIP12.27□□□□□ -0.45
SCN9A-206ENST00000472119 SLC10A4Q96EP9 437 aa12.27□□□□□ -0.45
SCN9A-206ENST00000472119 ZNF395Q9H8N7 513 aaPredicted RBP12.27□□□□□ -0.45
SCN9A-206ENST00000472119 ENAMQ9NRM1 1142 aa12.27□□□□□ -0.45
SCN9A-206ENST00000472119 SENP3-EIF4A1A0A087X0R7 540 aa12.26□□□□□ -0.45
SCN9A-206ENST00000472119 ZMYND10O75800 440 aa12.26□□□□□ -0.45
SCN9A-206ENST00000472119 MROH2BQ7Z745 1585 aa12.26□□□□□ -0.45
SCN9A-206ENST00000472119 ARHGAP9Q9BRR9 750 aa12.25□□□□□ -0.45
SCN9A-206ENST00000472119 LILRB3O75022 631 aa12.24□□□□□ -0.45
SCN9A-206ENST00000472119 SPOCK3Q9BQ16 436 aa12.24□□□□□ -0.45
SCN9A-206ENST00000472119 CNTNAP5Q8WYK1 1306 aa12.23□□□□□ -0.45
SCN9A-206ENST00000472119 PHF20L1A8MW92 1017 aa12.23□□□□□ -0.45
SCN9A-206ENST00000472119 GAS6Q14393 721 aa12.23□□□□□ -0.45
SCN9A-206ENST00000472119 MYSM1Q5VVJ2 828 aa12.23□□□□□ -0.45
SCN9A-206ENST00000472119 DCAF5Q96JK2 942 aa12.23□□□□□ -0.45
SCN9A-206ENST00000472119 RTL5Q5HYW3 569 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-206ENST00000472119 CDV3Q9UKY7 258 aaKnown RBP12.22□□□□□ -0.45
SCN9A-206ENST00000472119 ATAD2BQ9ULI0 1458 aa12.21□□□□□ -0.45
SCN9A-206ENST00000472119 INTS6LQ5JSJ4 861 aaKnown RBP12.21□□□□□ -0.45
SCN9A-206ENST00000472119 CUEDC1Q9NWM3 386 aaPredicted RBP12.21□□□□□ -0.45
SCN9A-206ENST00000472119 ZBTB33Q86T24 672 aa12.2□□□□□ -0.46
SCN9A-206ENST00000472119 GALNT6Q8NCL4 622 aa12.2□□□□□ -0.46
SCN9A-206ENST00000472119 TUSC1Q2TAM9 212 aa12.19□□□□□ -0.46
SCN9A-206ENST00000472119 PDXDC2PQ6P474 469 aa12.19□□□□□ -0.46
SCN9A-206ENST00000472119 PODNQ7Z5L7 613 aa12.18□□□□□ -0.46
SCN9A-206ENST00000472119 NEDD1Q8NHV4 660 aa12.18□□□□□ -0.46
SCN9A-206ENST00000472119 ZC3H15Q8WU90 426 aaKnown RBP12.18□□□□□ -0.46
SCN9A-206ENST00000472119 NCAPD3P42695 1498 aa12.18□□□□□ -0.46
SCN9A-206ENST00000472119 ITGB2P05107 769 aa12.17□□□□□ -0.46
SCN9A-206ENST00000472119 FOXD4L5Q5VV16 416 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-206ENST00000472119 BEND7Q8N7W2 519 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-206ENST00000472119 TMPRSS4Q9NRS4 437 aa12.17□□□□□ -0.46
SCN9A-206ENST00000472119 RSF1Q96T23 1441 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-206ENST00000472119 TRIM66O15016 1216 aa12.16□□□□□ -0.46
SCN9A-206ENST00000472119 MBIPQ9NS73 344 aa12.16□□□□□ -0.46
SCN9A-206ENST00000472119 SMARCA2P51531 1590 aa12.16□□□□□ -0.46
SCN9A-206ENST00000472119 RAB15P59190 212 aa12.15□□□□□ -0.46
SCN9A-206ENST00000472119 LYSMD3Q7Z3D4 306 aa12.15□□□□□ -0.46
SCN9A-206ENST00000472119 GPR25O00155 361 aa12.14□□□□□ -0.47
SCN9A-206ENST00000472119 PROCP04070 461 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms