RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 LRRC37A3O60309 1634 aa10.44□□□□□ -0.74
HDAC3-206ENST00000471968 VGFO15240 615 aaPredicted RBP10.43□□□□□ -0.74
HDAC3-206ENST00000471968 PAK3O75914 559 aaPredicted RBP10.43□□□□□ -0.74
HDAC3-206ENST00000471968 CTCFP49711 727 aaPredicted RBP10.43□□□□□ -0.74
HDAC3-206ENST00000471968 CD2APQ9Y5K6 639 aa10.43□□□□□ -0.74
HDAC3-206ENST00000471968 GPRASP1Q5JY77 1395 aa10.42□□□□□ -0.74
HDAC3-206ENST00000471968 SMC1BQ8NDV3 1235 aa10.42□□□□□ -0.74
HDAC3-206ENST00000471968 AKT1S1Q96B36 256 aa10.42□□□□□ -0.74
HDAC3-206ENST00000471968 BCL9O00512 1426 aa10.41□□□□□ -0.74
HDAC3-206ENST00000471968 CLTCL1P53675 1640 aa10.41□□□□□ -0.74
HDAC3-206ENST00000471968 LBX1P52954 281 aa10.41□□□□□ -0.74
HDAC3-206ENST00000471968 AIDAQ96BJ3 306 aa10.41□□□□□ -0.74
HDAC3-206ENST00000471968 CFAP44Q96MT7 982 aa10.41□□□□□ -0.74
HDAC3-206ENST00000471968 LRRC4BQ9NT99 713 aa10.41□□□□□ -0.74
HDAC3-206ENST00000471968 TFCP2L1Q9NZI6 479 aa10.41□□□□□ -0.74
HDAC3-206ENST00000471968 IGSF1Q8N6C5 1336 aa10.4□□□□□ -0.74
HDAC3-206ENST00000471968 MSL1Q68DK7 614 aa10.4□□□□□ -0.74
HDAC3-206ENST00000471968 MSH5O43196 834 aa10.39□□□□□ -0.75
HDAC3-206ENST00000471968 MKRN1Q9UHC7 482 aaKnown RBP10.39□□□□□ -0.75
HDAC3-206ENST00000471968 ACIN1Q9UKV3 1341 aaKnown RBP10.38□□□□□ -0.75
HDAC3-206ENST00000471968 HIRIP3Q9BW71 556 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-206ENST00000471968 IFT172Q9UG01 1749 aa10.38□□□□□ -0.75
HDAC3-206ENST00000471968 CRB1P82279 1406 aa10.37□□□□□ -0.75
HDAC3-206ENST00000471968 NUTM2GQ5VZR2 741 aa10.37□□□□□ -0.75
HDAC3-206ENST00000471968 ACSBG1Q96GR2 724 aa10.37□□□□□ -0.75
HDAC3-206ENST00000471968 RRAGCQ9HB90 399 aa10.37□□□□□ -0.75
HDAC3-206ENST00000471968 COL5A2P05997 1499 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-206ENST00000471968 QSER1Q2KHR3 1735 aa10.36□□□□□ -0.75
HDAC3-206ENST00000471968 KCPQ6ZWJ8 1503 aa10.35□□□□□ -0.75
HDAC3-206ENST00000471968 CICQ96RK0 1608 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-206ENST00000471968 BRD4O60885 1362 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-206ENST00000471968 KDM2BQ8NHM5 1336 aa10.34□□□□□ -0.75
HDAC3-206ENST00000471968 AKAP12Q02952 1782 aa10.34□□□□□ -0.75
HDAC3-206ENST00000471968 PRPF38BQ5VTL8 546 aaKnown RBP10.34□□□□□ -0.75
HDAC3-206ENST00000471968 ABCC11Q96J66 1382 aa10.34□□□□□ -0.75
HDAC3-206ENST00000471968 ANKRD30BQ9BXX2 1392 aa10.34□□□□□ -0.75
HDAC3-206ENST00000471968 LMO7Q8WWI1 1683 aa10.34□□□□□ -0.75
HDAC3-206ENST00000471968 C10orf71Q711Q0 1435 aa10.33□□□□□ -0.76
HDAC3-206ENST00000471968 KANK4Q5T7N3 995 aaPredicted RBP10.33□□□□□ -0.76
HDAC3-206ENST00000471968 TMEM132EQ6IEE7 984 aa10.33□□□□□ -0.76
HDAC3-206ENST00000471968 NUP155O75694 1391 aa10.33□□□□□ -0.76
HDAC3-206ENST00000471968 KCNQ4P56696 695 aa10.32□□□□□ -0.76
HDAC3-206ENST00000471968 SAFB2Q14151 953 aaKnown RBP eCLIP10.32□□□□□ -0.76
HDAC3-206ENST00000471968 TOM1L2Q6ZVM7 507 aa10.32□□□□□ -0.76
HDAC3-206ENST00000471968 COL23A1Q86Y22 540 aaPredicted RBP10.32□□□□□ -0.76
HDAC3-206ENST00000471968 NGDNQ8NEJ9 315 aaKnown RBP10.32□□□□□ -0.76
HDAC3-206ENST00000471968 ANKARQ7Z5J8 1434 aa10.32□□□□□ -0.76
HDAC3-206ENST00000471968 NHSQ6T4R5 1651 aa10.31□□□□□ -0.76
HDAC3-206ENST00000471968 PXDNLA1KZ92 1463 aa10.31□□□□□ -0.76
HDAC3-206ENST00000471968 TUBGCP6Q96RT7 1819 aa10.31□□□□□ -0.76
HDAC3-206ENST00000471968 PLEKHG2Q9H7P9 1386 aa10.31□□□□□ -0.76
HDAC3-206ENST00000471968 HSPA8P11142 646 aaKnown RBP10.31□□□□□ -0.76
HDAC3-206ENST00000471968 SLC27A3Q5K4L6 730 aa10.31□□□□□ -0.76
HDAC3-206ENST00000471968 C9orf131Q5VYM1 1079 aa10.31□□□□□ -0.76
HDAC3-206ENST00000471968 ARHGAP27Q6ZUM4 889 aa10.31□□□□□ -0.76
HDAC3-206ENST00000471968 CPDO75976 1380 aa10.3□□□□□ -0.76
HDAC3-206ENST00000471968 ZBTB7CA1YPR0 619 aa10.3□□□□□ -0.76
HDAC3-206ENST00000471968 EXOC5O00471 708 aa10.3□□□□□ -0.76
HDAC3-206ENST00000471968 DLL1O00548 723 aa10.3□□□□□ -0.76
HDAC3-206ENST00000471968 CDCA7Q9BWT1 371 aaPredicted RBP10.3□□□□□ -0.76
HDAC3-206ENST00000471968 USP6P35125 1406 aa10.3□□□□□ -0.76
HDAC3-206ENST00000471968 WBP1LQ9NX94 342 aa10.29□□□□□ -0.76
HDAC3-206ENST00000471968 KNDC1Q76NI1 1749 aa10.29□□□□□ -0.76
HDAC3-206ENST00000471968 CREBZFQ9NS37 354 aa10.28□□□□□ -0.76
HDAC3-206ENST00000471968 BCS1LQ9Y276 419 aa10.28□□□□□ -0.76
HDAC3-206ENST00000471968 RPGRIP1LQ68CZ1 1315 aa10.28□□□□□ -0.76
HDAC3-206ENST00000471968 BTAF1O14981 1849 aa10.27□□□□□ -0.77
HDAC3-206ENST00000471968 KIF1BO60333 1816 aa10.27□□□□□ -0.77
HDAC3-206ENST00000471968 CNTNAP1P78357 1384 aa10.26□□□□□ -0.77
HDAC3-206ENST00000471968 YTHDC2Q9H6S0 1430 aaKnown RBP10.26□□□□□ -0.77
HDAC3-206ENST00000471968 PRR36Q9H6K5 1346 aa10.26□□□□□ -0.77
HDAC3-206ENST00000471968 TNRC6CQ9HCJ0 1690 aaKnown RBP10.25□□□□□ -0.77
HDAC3-206ENST00000471968 VEGFBP49765 207 aa10.25□□□□□ -0.77
HDAC3-206ENST00000471968 WNK3Q9BYP7 1800 aa10.25□□□□□ -0.77
HDAC3-206ENST00000471968 ADGRF5Q8IZF2 1346 aa10.25□□□□□ -0.77
HDAC3-206ENST00000471968 TRPM1Q7Z4N2 1603 aa10.25□□□□□ -0.77
HDAC3-206ENST00000471968 A0A0C4DFX4 3053 aa10.24□□□□□ -0.77
HDAC3-206ENST00000471968 SIRT1Q96EB6 747 aa10.24□□□□□ -0.77
HDAC3-206ENST00000471968 PRAM1Q96QH2 718 aa10.24□□□□□ -0.77
HDAC3-206ENST00000471968 RNF181Q9P0P0 153 aa10.24□□□□□ -0.77
HDAC3-206ENST00000471968 PPLO60437 1756 aa10.22□□□□□ -0.77
HDAC3-206ENST00000471968 GCP02774 474 aa10.22□□□□□ -0.77
HDAC3-206ENST00000471968 VEGFAP15692 232 aaPredicted RBP10.22□□□□□ -0.77
HDAC3-206ENST00000471968 ABTB2Q8N961 1025 aa10.22□□□□□ -0.77
HDAC3-206ENST00000471968 WDR17Q8IZU2 1322 aa10.22□□□□□ -0.77
HDAC3-206ENST00000471968 VPS8Q8N3P4 1428 aa10.22□□□□□ -0.77
HDAC3-206ENST00000471968 CUL9Q8IWT3 2517 aa10.22□□□□□ -0.77
HDAC3-206ENST00000471968 PKD1L3Q7Z443 1732 aa10.21□□□□□ -0.77
HDAC3-206ENST00000471968 MCOLN1Q9GZU1 580 aa10.21□□□□□ -0.77
HDAC3-206ENST00000471968 PIK3C2AO00443 1686 aa10.21□□□□□ -0.78
HDAC3-206ENST00000471968 FCHSD2O94868 740 aa10.2□□□□□ -0.78
HDAC3-206ENST00000471968 GCC1Q96CN9 775 aa10.2□□□□□ -0.78
HDAC3-206ENST00000471968 POGKQ9P215 609 aa10.2□□□□□ -0.78
HDAC3-206ENST00000471968 EIF3AQ14152 1382 aaKnown RBP10.19□□□□□ -0.78
HDAC3-206ENST00000471968 A0A0G2JLW4 131 aa10.19□□□□□ -0.78
HDAC3-206ENST00000471968 CSB-PGBD3P0DP91 1061 aa10.19□□□□□ -0.78
HDAC3-206ENST00000471968 SOX10P56693 466 aa10.19□□□□□ -0.78
HDAC3-206ENST00000471968 FAM50AQ14320 339 aaKnown RBP10.19□□□□□ -0.78
HDAC3-206ENST00000471968 HABP4Q5JVS0 413 aaKnown RBP10.19□□□□□ -0.78
HDAC3-206ENST00000471968 SMIM5Q71RC9 77 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms