RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PLEKHG2Q9H7P9 1386 aa6.71□□□□□ -1.33
SYNE1-220ENST00000471834 TRIM27P14373 513 aa6.71□□□□□ -1.33
SYNE1-220ENST00000471834 C22orf23Q9BZE7 217 aa6.71□□□□□ -1.33
SYNE1-220ENST00000471834 MROH2AA6NES4 1674 aa6.71□□□□□ -1.33
SYNE1-220ENST00000471834 ZKSCAN2Q63HK3 967 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 FUCA2Q9BTY2 467 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 ZKSCAN5Q9Y2L8 839 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 KDRP35968 1356 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 NSD3Q9BZ95 1437 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 INTS4Q96HW7 963 aaKnown RBP6.71□□□□□ -1.34
SYNE1-220ENST00000471834 DCTPP1Q9H773 170 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 INTS3Q68E01 1043 aaKnown RBP6.71□□□□□ -1.34
SYNE1-220ENST00000471834 KCND1Q9NSA2 647 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 SPATA31D1Q6ZQQ2 1576 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 SIRT2Q8IXJ6 389 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 SOS1Q07889 1333 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-220ENST00000471834 ARHGEF10O15013 1369 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 USP54Q70EL1 1684 aa6.71□□□□□ -1.34
SYNE1-220ENST00000471834 TNPO1Q92973 898 aaKnown RBP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 HNRNPMP52272 730 aaKnown RBP eCLIP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 CTIFO43310 598 aaKnown RBP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 MYH16Q9H6N6 1097 aa6.7□□□□□ -1.34
SYNE1-220ENST00000471834 LMBRD1Q9NUN5 540 aa6.7□□□□□ -1.34
SYNE1-220ENST00000471834 MED1Q15648 1581 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 PTPRUQ92729 1446 aa6.7□□□□□ -1.34
SYNE1-220ENST00000471834 BRD1O95696 1058 aa6.7□□□□□ -1.34
SYNE1-220ENST00000471834 WDR43Q15061 677 aaKnown RBP eCLIP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 TMX4Q9H1E5 349 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 VGFO15240 615 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 LMOD2Q6P5Q4 547 aa6.7□□□□□ -1.34
SYNE1-220ENST00000471834 RGS22Q8NE09 1264 aa6.7□□□□□ -1.34
SYNE1-220ENST00000471834 UPF2Q9HAU5 1272 aaKnown RBP6.7□□□□□ -1.34
SYNE1-220ENST00000471834 SETD1AO15047 1707 aaKnown RBP6.69□□□□□ -1.34
SYNE1-220ENST00000471834 HMGN5P82970 282 aaKnown RBP6.69□□□□□ -1.34
SYNE1-220ENST00000471834 DZIP1LQ8IYY4 767 aaKnown RBP6.69□□□□□ -1.34
SYNE1-220ENST00000471834 SLKQ9H2G2 1235 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-220ENST00000471834 TMEM131LA2VDJ0 1609 aa6.69□□□□□ -1.34
SYNE1-220ENST00000471834 ZSCAN20P17040 1043 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-220ENST00000471834 ZMYND15Q9H091 742 aa6.69□□□□□ -1.34
SYNE1-220ENST00000471834 RBM43Q6ZSC3 357 aaKnown RBP6.69□□□□□ -1.34
SYNE1-220ENST00000471834 ANAPC15P60006 121 aa6.69□□□□□ -1.34
SYNE1-220ENST00000471834 DYNC1I1O14576 645 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 CHMP4BQ9H444 224 aaKnown RBP6.68□□□□□ -1.34
SYNE1-220ENST00000471834 PXDNLA1KZ92 1463 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 FCHSD2O94868 740 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 RAD50Q92878 1312 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 LRRC37A3O60309 1634 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 JCADQ9P266 1359 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 KIF20AO95235 890 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 TICAM2Q86XR7 235 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 ADGRL3Q9HAR2 1447 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 RGPD1P0DJD0 1748 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 RABEP1Q15276 862 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 SSH1Q8WYL5 1049 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 AOX1Q06278 1338 aa6.68□□□□□ -1.34
SYNE1-220ENST00000471834 USP31Q70CQ4 1352 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 RPAP1Q9BWH6 1393 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-220ENST00000471834 CAMSAP1Q5T5Y3 1602 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 VAMP4O75379 141 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 FAM184AQ8NB25 1140 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 PKNOX2Q96KN3 472 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 GLIPR1L2Q4G1C9 344 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 CWC22Q9HCG8 908 aaKnown RBP6.67□□□□□ -1.34
SYNE1-220ENST00000471834 COG6Q9Y2V7 657 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 CCDC171Q6TFL3 1326 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 DIP2CQ9Y2E4 1556 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 STAP2Q9UGK3 403 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 UVSSAQ2YD98 709 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 A0A1W2PP64 1363 aa6.67□□□□□ -1.34
SYNE1-220ENST00000471834 TUBGCP6Q96RT7 1819 aa6.66□□□□□ -1.34
SYNE1-220ENST00000471834 CFAP70Q5T0N1 1121 aa6.66□□□□□ -1.34
SYNE1-220ENST00000471834 CD2BP2O95400 341 aaKnown RBP6.66□□□□□ -1.34
SYNE1-220ENST00000471834 BAG4O95429 457 aaKnown RBP6.66□□□□□ -1.34
SYNE1-220ENST00000471834 SLC4A3P48751 1232 aa6.66□□□□□ -1.34
SYNE1-220ENST00000471834 PRIMPOLQ96LW4 560 aa6.66□□□□□ -1.34
SYNE1-220ENST00000471834 SPAG9O60271 1321 aaKnown RBP6.66□□□□□ -1.34
SYNE1-220ENST00000471834 CPS1P31327 1500 aa6.66□□□□□ -1.34
SYNE1-220ENST00000471834 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-220ENST00000471834 RPAP2Q8IXW5 612 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-220ENST00000471834 PANK1Q8TE04 598 aa6.65□□□□□ -1.34
SYNE1-220ENST00000471834 ANKRD7Q92527 254 aa6.65□□□□□ -1.34
SYNE1-220ENST00000471834 PPP6R1Q9UPN7 881 aa6.65□□□□□ -1.34
SYNE1-220ENST00000471834 PDIA4P13667 645 aaKnown RBP6.65□□□□□ -1.34
SYNE1-220ENST00000471834 USP25Q9UHP3 1055 aa6.65□□□□□ -1.34
SYNE1-220ENST00000471834 N4BP2Q86UW6 1770 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-220ENST00000471834 FKBP5Q13451 457 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-220ENST00000471834 USP42Q9H9J4 1324 aaKnown RBP6.65□□□□□ -1.35
SYNE1-220ENST00000471834 NUCB2P80303 420 aa6.65□□□□□ -1.35
SYNE1-220ENST00000471834 ANKRD44Q8N8A2 993 aa6.65□□□□□ -1.35
SYNE1-220ENST00000471834 KNDC1Q76NI1 1749 aa6.65□□□□□ -1.35
SYNE1-220ENST00000471834 K7ELQ4 463 aaPredicted RBP6.65□□□□□ -1.35
SYNE1-220ENST00000471834 TMPOP42166 694 aaKnown RBP6.65□□□□□ -1.35
SYNE1-220ENST00000471834 UBXN6Q9BZV1 441 aa6.65□□□□□ -1.35
SYNE1-220ENST00000471834 RTN4Q9NQC3 1192 aaKnown RBP6.65□□□□□ -1.35
SYNE1-220ENST00000471834 TAOK2Q9UL54 1235 aa6.65□□□□□ -1.35
SYNE1-220ENST00000471834 OVOS2A0A0J9YW53 1432 aa6.65□□□□□ -1.35
SYNE1-220ENST00000471834 OVOS2Q6IE36 1432 aa6.65□□□□□ -1.35
SYNE1-220ENST00000471834 TULP1O00294 542 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-220ENST00000471834 TNNQ9UQP3 1299 aa6.64□□□□□ -1.35
SYNE1-220ENST00000471834 SLC52A1Q9NWF4 448 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms