RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 STRN4Q9NRL3 753 aa16.32■□□□□ 0.2
VPS13D-204ENST00000469054 NPC1L1Q9UHC9 1359 aa16.31■□□□□ 0.2
VPS13D-204ENST00000469054 ZNF316A6NFI3 1004 aaPredicted RBP16.31■□□□□ 0.2
VPS13D-204ENST00000469054 AMPHP49418 695 aa16.31■□□□□ 0.2
VPS13D-204ENST00000469054 DDX10Q13206 875 aaKnown RBP16.31■□□□□ 0.2
VPS13D-204ENST00000469054 CC2D1BQ5T0F9 858 aaKnown RBP16.31■□□□□ 0.2
VPS13D-204ENST00000469054 IP6K1Q92551 441 aa16.31■□□□□ 0.2
VPS13D-204ENST00000469054 GJD4Q96KN9 370 aaPredicted RBP16.31■□□□□ 0.2
VPS13D-204ENST00000469054 CAMTA1Q9Y6Y1 1673 aa16.3■□□□□ 0.2
VPS13D-204ENST00000469054 TNNT2P45379 298 aaPredicted RBP16.3■□□□□ 0.2
VPS13D-204ENST00000469054 CCDC9Q9Y3X0 531 aaKnown RBP16.3■□□□□ 0.2
VPS13D-204ENST00000469054 LARP1Q6PKG0 1096 aaKnown RBP16.29■□□□□ 0.2
VPS13D-204ENST00000469054 KCNA4P22459 653 aa16.28■□□□□ 0.2
VPS13D-204ENST00000469054 HOXC9P31274 260 aa16.28■□□□□ 0.2
VPS13D-204ENST00000469054 EMILIN1Q9Y6C2 1016 aa16.28■□□□□ 0.2
VPS13D-204ENST00000469054 KIF20BQ96Q89 1820 aa16.28■□□□□ 0.2
VPS13D-204ENST00000469054 COL5A2P05997 1499 aaPredicted RBP16.28■□□□□ 0.2
VPS13D-204ENST00000469054 NWD2Q9ULI1 1742 aa16.28■□□□□ 0.2
VPS13D-204ENST00000469054 SPATA31A5Q5VU36 1347 aa16.27■□□□□ 0.2
VPS13D-204ENST00000469054 SPATA31A7Q8IWB4 1347 aa16.27■□□□□ 0.2
VPS13D-204ENST00000469054 POLKQ9UBT6 870 aa16.27■□□□□ 0.2
VPS13D-204ENST00000469054 PLCH1Q4KWH8 1693 aa16.27■□□□□ 0.19
VPS13D-204ENST00000469054 LMO7Q8WWI1 1683 aa16.27■□□□□ 0.19
VPS13D-204ENST00000469054 KIF24Q5T7B8 1368 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 ERBB3P21860 1342 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 WDR17Q8IZU2 1322 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 ABCC6O95255 1503 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 PPM1GO15355 546 aaPredicted RBP16.26■□□□□ 0.19
VPS13D-204ENST00000469054 CSB-PGBD3P0DP91 1061 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 CNGB1Q14028 1251 aaPredicted RBP16.26■□□□□ 0.19
VPS13D-204ENST00000469054 TOM1L2Q6ZVM7 507 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 ILDR2Q71H61 639 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 CNKSR2Q8WXI2 1034 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 BLMP54132 1417 aaPredicted RBP16.26■□□□□ 0.19
VPS13D-204ENST00000469054 RTL1A6NKG5 1358 aa16.26■□□□□ 0.19
VPS13D-204ENST00000469054 SPATA31A1Q5TZJ5 1347 aa16.25■□□□□ 0.19
VPS13D-204ENST00000469054 ANKRD24Q8TF21 1146 aa16.25■□□□□ 0.19
VPS13D-204ENST00000469054 USP35Q9P2H5 1018 aa16.25■□□□□ 0.19
VPS13D-204ENST00000469054 COL18A1P39060 1754 aa16.25■□□□□ 0.19
VPS13D-204ENST00000469054 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.25■□□□□ 0.19
VPS13D-204ENST00000469054 FLT4P35916 1363 aa16.25■□□□□ 0.19
VPS13D-204ENST00000469054 HSP90AB2PQ58FF8 381 aa16.24■□□□□ 0.19
VPS13D-204ENST00000469054 LTV1Q96GA3 475 aaPredicted RBP16.24■□□□□ 0.19
VPS13D-204ENST00000469054 NRAPQ86VF7 1730 aa16.24■□□□□ 0.19
VPS13D-204ENST00000469054 CRB1P82279 1406 aa16.23■□□□□ 0.19
VPS13D-204ENST00000469054 ONECUT3O60422 494 aaPredicted RBP16.23■□□□□ 0.19
VPS13D-204ENST00000469054 TCP11L2Q8N4U5 519 aa16.23■□□□□ 0.19
VPS13D-204ENST00000469054 FAM98CQ17RN3 349 aaKnown RBP16.22■□□□□ 0.19
VPS13D-204ENST00000469054 CARD10Q9BWT7 1032 aa16.22■□□□□ 0.19
VPS13D-204ENST00000469054 THRAP3Q9Y2W1 955 aaKnown RBP16.22■□□□□ 0.19
VPS13D-204ENST00000469054 INSRP06213 1382 aa16.22■□□□□ 0.19
VPS13D-204ENST00000469054 BARGINQ6ZT62 677 aa16.21■□□□□ 0.19
VPS13D-204ENST00000469054 NLRP2Q9NX02 1062 aa16.21■□□□□ 0.19
VPS13D-204ENST00000469054 CDK12Q9NYV4 1490 aaPredicted RBP16.21■□□□□ 0.19
VPS13D-204ENST00000469054 MTHFSP49914 203 aa16.2■□□□□ 0.18
VPS13D-204ENST00000469054 SEPT12Q8IYM1 358 aa16.2■□□□□ 0.18
VPS13D-204ENST00000469054 GLI3P10071 1580 aa16.2■□□□□ 0.18
VPS13D-204ENST00000469054 ANKRD26Q9UPS8 1709 aa16.19■□□□□ 0.18
VPS13D-204ENST00000469054 LTN1O94822 1766 aa16.19■□□□□ 0.18
VPS13D-204ENST00000469054 RGS12O14924 1447 aa16.19■□□□□ 0.18
VPS13D-204ENST00000469054 SMG6Q86US8 1419 aaKnown RBP16.19■□□□□ 0.18
VPS13D-204ENST00000469054 A0A0G2JS52 829 aa16.18■□□□□ 0.18
VPS13D-204ENST00000469054 MYT1Q01538 1121 aa16.18■□□□□ 0.18
VPS13D-204ENST00000469054 NCBP3Q53F19 620 aaKnown RBP16.18■□□□□ 0.18
VPS13D-204ENST00000469054 EIF4A2Q14240 407 aaKnown RBP16.16■□□□□ 0.18
VPS13D-204ENST00000469054 NBPF6Q5VWK0 638 aa16.16■□□□□ 0.18
VPS13D-204ENST00000469054 NBPF4Q96M43 638 aa16.16■□□□□ 0.18
VPS13D-204ENST00000469054 PEAK1Q9H792 1746 aa16.16■□□□□ 0.18
VPS13D-204ENST00000469054 PARD3Q8TEW0 1356 aa16.15■□□□□ 0.18
VPS13D-204ENST00000469054 PPP2R1AP30153 589 aa16.15■□□□□ 0.18
VPS13D-204ENST00000469054 RALBP1Q15311 655 aa16.15■□□□□ 0.18
VPS13D-204ENST00000469054 CDCA7Q9BWT1 371 aaPredicted RBP16.15■□□□□ 0.18
VPS13D-204ENST00000469054 RGPD5Q99666 1765 aa16.13■□□□□ 0.17
VPS13D-204ENST00000469054 MAP2P11137 1827 aaKnown RBP16.13■□□□□ 0.17
VPS13D-204ENST00000469054 IL2RBP14784 551 aa16.13■□□□□ 0.17
VPS13D-204ENST00000469054 EYA1Q99502 592 aa16.13■□□□□ 0.17
VPS13D-204ENST00000469054 KRT27Q7Z3Y8 459 aa16.12■□□□□ 0.17
VPS13D-204ENST00000469054 USHBP1Q8N6Y0 703 aa16.12■□□□□ 0.17
VPS13D-204ENST00000469054 DISP2A7MBM2 1401 aa16.11■□□□□ 0.17
VPS13D-204ENST00000469054 IL13P35225 146 aa16.11■□□□□ 0.17
VPS13D-204ENST00000469054 DDB1Q16531 1140 aa16.11■□□□□ 0.17
VPS13D-204ENST00000469054 DIAPH1O60610 1272 aaKnown RBP16.1■□□□□ 0.17
VPS13D-204ENST00000469054 PDE3BQ13370 1112 aa16.1■□□□□ 0.17
VPS13D-204ENST00000469054 CFAP53Q96M91 514 aa16.1■□□□□ 0.17
VPS13D-204ENST00000469054 EXOC5O00471 708 aa16.09■□□□□ 0.17
VPS13D-204ENST00000469054 PRKRIP1Q9H875 184 aaPredicted RBP16.09■□□□□ 0.17
VPS13D-204ENST00000469054 THSD7AQ9UPZ6 1657 aa16.08■□□□□ 0.17
VPS13D-204ENST00000469054 RAPGEF4Q8WZA2 1011 aa16.08■□□□□ 0.16
VPS13D-204ENST00000469054 IGSF1Q8N6C5 1336 aa16.08■□□□□ 0.16
VPS13D-204ENST00000469054 NPM3O75607 178 aaKnown RBP16.07■□□□□ 0.16
VPS13D-204ENST00000469054 TATP17735 454 aaPredicted RBP16.07■□□□□ 0.16
VPS13D-204ENST00000469054 FAM208AQ9UK61 1670 aaKnown RBP16.06■□□□□ 0.16
VPS13D-204ENST00000469054 NCAPD2Q15021 1401 aa16.06■□□□□ 0.16
VPS13D-204ENST00000469054 MYBBP1AQ9BQG0 1328 aaKnown RBP16.06■□□□□ 0.16
VPS13D-204ENST00000469054 FAM182BQ5T319 152 aa16.05■□□□□ 0.16
VPS13D-204ENST00000469054 ZCRB1Q8TBF4 217 aaKnown RBP16.05■□□□□ 0.16
VPS13D-204ENST00000469054 MEGF6O75095 1541 aa16.04■□□□□ 0.16
VPS13D-204ENST00000469054 COL3A1P02461 1466 aaPredicted RBP16.04■□□□□ 0.16
VPS13D-204ENST00000469054 SOCS7O14512 581 aa16.04■□□□□ 0.16
VPS13D-204ENST00000469054 SULT6B1Q6IMI4 303 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms