RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 C3P01024 1663 aa13.2□□□□□ -0.3
CD44-210ENST00000434472 SMC5Q8IY18 1101 aa13.2□□□□□ -0.3
CD44-210ENST00000434472 TMEM57Q8N5G2 664 aa13.2□□□□□ -0.3
CD44-210ENST00000434472 ZBTB40Q9NUA8 1239 aa13.2□□□□□ -0.3
CD44-210ENST00000434472 HMOX1P09601 288 aa13.19□□□□□ -0.3
CD44-210ENST00000434472 ZNF853P0CG23 659 aa13.19□□□□□ -0.3
CD44-210ENST00000434472 SLC4A3P48751 1232 aa13.19□□□□□ -0.3
CD44-210ENST00000434472 HAP1P54257 671 aaPredicted RBP13.18□□□□□ -0.3
CD44-210ENST00000434472 NFKBIBQ15653 356 aa13.18□□□□□ -0.3
CD44-210ENST00000434472 PHACTR3Q96KR7 559 aa13.18□□□□□ -0.3
CD44-210ENST00000434472 PTCH1Q13635 1447 aa13.18□□□□□ -0.3
CD44-210ENST00000434472 ADAMTS13Q76LX8 1427 aa13.18□□□□□ -0.3
CD44-210ENST00000434472 PIK3R4Q99570 1358 aa13.18□□□□□ -0.3
CD44-210ENST00000434472 PLEKHG3A1L390 1219 aa13.17□□□□□ -0.3
CD44-210ENST00000434472 VAMP4O75379 141 aa13.17□□□□□ -0.3
CD44-210ENST00000434472 MRPL50Q8N5N7 158 aaKnown RBP13.17□□□□□ -0.3
CD44-210ENST00000434472 TBC1D32Q96NH3 1257 aa13.17□□□□□ -0.3
CD44-210ENST00000434472 NRKQ7Z2Y5 1582 aa13.17□□□□□ -0.3
CD44-210ENST00000434472 SEC24BO95487 1268 aa13.17□□□□□ -0.3
CD44-210ENST00000434472 CFAP44Q96MT7 982 aa13.17□□□□□ -0.3
CD44-210ENST00000434472 ROBO2Q9HCK4 1378 aa13.16□□□□□ -0.3
CD44-210ENST00000434472 TTC21BQ7Z4L5 1316 aa13.16□□□□□ -0.3
CD44-210ENST00000434472 PRR36Q9H6K5 1346 aa13.16□□□□□ -0.3
CD44-210ENST00000434472 FBLN1P23142 703 aa13.16□□□□□ -0.3
CD44-210ENST00000434472 API5Q9BZZ5 524 aaKnown RBP13.16□□□□□ -0.3
CD44-210ENST00000434472 ZRANB1Q9UGI0 708 aa13.16□□□□□ -0.3
CD44-210ENST00000434472 KIF24Q5T7B8 1368 aa13.15□□□□□ -0.3
CD44-210ENST00000434472 TOPAZ1Q8N9V7 1692 aa13.15□□□□□ -0.3
CD44-210ENST00000434472 EID1Q9Y6B2 187 aa13.15□□□□□ -0.3
CD44-210ENST00000434472 NUCB1Q02818 461 aa13.14□□□□□ -0.31
CD44-210ENST00000434472 GCC1Q96CN9 775 aa13.14□□□□□ -0.31
CD44-210ENST00000434472 MBIPQ9NS73 344 aa13.14□□□□□ -0.31
CD44-210ENST00000434472 TWISTNBQ3B726 338 aaPredicted RBP13.13□□□□□ -0.31
CD44-210ENST00000434472 ABCC4O15439 1325 aa13.13□□□□□ -0.31
CD44-210ENST00000434472 ACEP12821 1306 aa13.13□□□□□ -0.31
CD44-210ENST00000434472 TTC21AQ8NDW8 1320 aa13.13□□□□□ -0.31
CD44-210ENST00000434472 OVOS2A0A0J9YW53 1432 aa13.13□□□□□ -0.31
CD44-210ENST00000434472 OVOS2Q6IE36 1432 aa13.13□□□□□ -0.31
CD44-210ENST00000434472 ZBTB7BO15156 539 aaPredicted RBP13.13□□□□□ -0.31
CD44-210ENST00000434472 RRS1Q15050 365 aaKnown RBP13.13□□□□□ -0.31
CD44-210ENST00000434472 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.12□□□□□ -0.31
CD44-210ENST00000434472 NCKAP5LQ9HCH0 1330 aa13.12□□□□□ -0.31
CD44-210ENST00000434472 USP6P35125 1406 aa13.12□□□□□ -0.31
CD44-210ENST00000434472 USP31Q70CQ4 1352 aa13.12□□□□□ -0.31
CD44-210ENST00000434472 SLIT1O75093 1534 aa13.11□□□□□ -0.31
CD44-210ENST00000434472 EIF4A2Q14240 407 aaKnown RBP13.11□□□□□ -0.31
CD44-210ENST00000434472 THUMPD2Q9BTF0 503 aaKnown RBP13.11□□□□□ -0.31
CD44-210ENST00000434472 TBX22Q9Y458 520 aa13.11□□□□□ -0.31
CD44-210ENST00000434472 ARHGAP23Q9P227 1491 aa13.11□□□□□ -0.31
CD44-210ENST00000434472 DIP2AQ14689 1571 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 EIF5BO60841 1220 aaKnown RBP13.1□□□□□ -0.31
CD44-210ENST00000434472 LTKP29376 864 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 GSE1Q14687 1217 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 CHD1LQ86WJ1 897 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 DLG5Q8TDM6 1919 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 KIAA0232Q92628 1395 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 TSPYL6Q8N831 410 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 C22orf23Q9BZE7 217 aa13.1□□□□□ -0.31
CD44-210ENST00000434472 NALCNQ8IZF0 1738 aa13.09□□□□□ -0.31
CD44-210ENST00000434472 ARHGEF10O15013 1369 aa13.09□□□□□ -0.31
CD44-210ENST00000434472 SSH2Q76I76 1423 aa13.09□□□□□ -0.31
CD44-210ENST00000434472 SULT6B1Q6IMI4 303 aa13.08□□□□□ -0.32
CD44-210ENST00000434472 C8orf58Q8NAV2 365 aa13.08□□□□□ -0.32
CD44-210ENST00000434472 PTPRUQ92729 1446 aa13.08□□□□□ -0.32
CD44-210ENST00000434472 CHL1O00533 1208 aa13.07□□□□□ -0.32
CD44-210ENST00000434472 BMP2KLQ5H9B9 411 aa13.07□□□□□ -0.32
CD44-210ENST00000434472 MFAP1P55081 439 aaKnown RBP13.06□□□□□ -0.32
CD44-210ENST00000434472 THEMISQ8N1K5 641 aaPredicted RBP13.06□□□□□ -0.32
CD44-210ENST00000434472 TBC1D2Q9BYX2 928 aa13.06□□□□□ -0.32
CD44-210ENST00000434472 AMOTL2Q9Y2J4 779 aa13.06□□□□□ -0.32
CD44-210ENST00000434472 RGPD1P0DJD0 1748 aa13.06□□□□□ -0.32
CD44-210ENST00000434472 ELL2O00472 640 aaPredicted RBP13.06□□□□□ -0.32
CD44-210ENST00000434472 INTS3Q68E01 1043 aaKnown RBP13.06□□□□□ -0.32
CD44-210ENST00000434472 LNPKQ9C0E8 428 aa13.06□□□□□ -0.32
CD44-210ENST00000434472 SBNO1A3KN83 1393 aa13.05□□□□□ -0.32
CD44-210ENST00000434472 ANKARQ7Z5J8 1434 aa13.05□□□□□ -0.32
CD44-210ENST00000434472 FAM83GA6ND36 823 aa13.05□□□□□ -0.32
CD44-210ENST00000434472 FRAT2O75474 233 aaPredicted RBP13.05□□□□□ -0.32
CD44-210ENST00000434472 ANKRD45Q5TZF3 282 aa13.05□□□□□ -0.32
CD44-210ENST00000434472 PTPRCP08575 1304 aa13.05□□□□□ -0.32
CD44-210ENST00000434472 RIMS1Q86UR5 1692 aaKnown RBP13.04□□□□□ -0.32
CD44-210ENST00000434472 RBM25P49756 843 aaKnown RBP13.04□□□□□ -0.32
CD44-210ENST00000434472 AEBP1Q8IUX7 1158 aa13.04□□□□□ -0.32
CD44-210ENST00000434472 SLC26A8Q96RN1 970 aa13.04□□□□□ -0.32
CD44-210ENST00000434472 ANTXR1Q9H6X2 564 aa13.04□□□□□ -0.32
CD44-210ENST00000434472 FLT4P35916 1363 aa13.04□□□□□ -0.32
CD44-210ENST00000434472 PEAK1Q9H792 1746 aa13.04□□□□□ -0.32
CD44-210ENST00000434472 DCTN1Q14203 1278 aa13.03□□□□□ -0.32
CD44-210ENST00000434472 HTATSF1O43719 755 aaKnown RBP13.02□□□□□ -0.32
CD44-210ENST00000434472 HSP90AB2PQ58FF8 381 aa13.02□□□□□ -0.32
CD44-210ENST00000434472 HSCBQ8IWL3 235 aa13.02□□□□□ -0.32
CD44-210ENST00000434472 RPAP2Q8IXW5 612 aaPredicted RBP13.02□□□□□ -0.32
CD44-210ENST00000434472 NGDNQ8NEJ9 315 aaKnown RBP13.02□□□□□ -0.32
CD44-210ENST00000434472 GAS2L2Q8NHY3 880 aa13.02□□□□□ -0.32
CD44-210ENST00000434472 RTF1Q92541 710 aaKnown RBP13.02□□□□□ -0.32
CD44-210ENST00000434472 CEBPAP49715 358 aaPredicted RBP13.02□□□□□ -0.33
CD44-210ENST00000434472 MAP3K19Q56UN5 1328 aa13.02□□□□□ -0.33
CD44-210ENST00000434472 CRB1P82279 1406 aa13.02□□□□□ -0.33
CD44-210ENST00000434472 NUTM2FA1L443 756 aa13.01□□□□□ -0.33
CD44-210ENST00000434472 SIRT2Q8IXJ6 389 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms