RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 SPATA31A5Q5VU36 1347 aa31.57■■■□□ 2.64
SMARCB1-205ENST00000417137 SPATA31A7Q8IWB4 1347 aa31.57■■■□□ 2.64
SMARCB1-205ENST00000417137 PER1O15534 1290 aaPredicted RBP31.57■■■□□ 2.64
SMARCB1-205ENST00000417137 AMPHP49418 695 aa31.57■■■□□ 2.64
SMARCB1-205ENST00000417137 LMO7Q8WWI1 1683 aa31.57■■■□□ 2.64
SMARCB1-205ENST00000417137 IP6K1Q92551 441 aa31.56■■■□□ 2.64
SMARCB1-205ENST00000417137 MAP3K19Q56UN5 1328 aa31.55■■■□□ 2.64
SMARCB1-205ENST00000417137 FBLN1P23142 703 aa31.55■■■□□ 2.64
SMARCB1-205ENST00000417137 LARP1Q6PKG0 1096 aaKnown RBP31.55■■■□□ 2.64
SMARCB1-205ENST00000417137 NRAPQ86VF7 1730 aa31.55■■■□□ 2.64
SMARCB1-205ENST00000417137 ABCC6O95255 1503 aa31.54■■■□□ 2.64
SMARCB1-205ENST00000417137 COL5A2P05997 1499 aaPredicted RBP31.54■■■□□ 2.64
SMARCB1-205ENST00000417137 CSB-PGBD3P0DP91 1061 aa31.54■■■□□ 2.64
SMARCB1-205ENST00000417137 MORC1Q86VD1 984 aa31.54■■■□□ 2.64
SMARCB1-205ENST00000417137 RRS1Q15050 365 aaKnown RBP31.53■■■□□ 2.64
SMARCB1-205ENST00000417137 AMER1Q5JTC6 1135 aaPredicted RBP31.53■■■□□ 2.64
SMARCB1-205ENST00000417137 SPATA31A1Q5TZJ5 1347 aa31.52■■■□□ 2.64
SMARCB1-205ENST00000417137 TOM1L2Q6ZVM7 507 aa31.51■■■□□ 2.63
SMARCB1-205ENST00000417137 COL18A1P39060 1754 aa31.51■■■□□ 2.63
SMARCB1-205ENST00000417137 WDR17Q8IZU2 1322 aa31.5■■■□□ 2.63
SMARCB1-205ENST00000417137 ONECUT3O60422 494 aaPredicted RBP31.5■■■□□ 2.63
SMARCB1-205ENST00000417137 BLMP54132 1417 aaPredicted RBP31.49■■■□□ 2.63
SMARCB1-205ENST00000417137 HOXC9P31274 260 aa31.49■■■□□ 2.63
SMARCB1-205ENST00000417137 USP35Q9P2H5 1018 aa31.49■■■□□ 2.63
SMARCB1-205ENST00000417137 RTL1A6NKG5 1358 aa31.48■■■□□ 2.63
SMARCB1-205ENST00000417137 KIF24Q5T7B8 1368 aa31.48■■■□□ 2.63
SMARCB1-205ENST00000417137 TNNT2P45379 298 aaPredicted RBP31.48■■■□□ 2.63
SMARCB1-205ENST00000417137 TCP11L2Q8N4U5 519 aa31.48■■■□□ 2.63
SMARCB1-205ENST00000417137 THRAP3Q9Y2W1 955 aaKnown RBP31.48■■■□□ 2.63
SMARCB1-205ENST00000417137 CRB1P82279 1406 aa31.48■■■□□ 2.63
SMARCB1-205ENST00000417137 FAM98CQ17RN3 349 aaKnown RBP31.47■■■□□ 2.63
SMARCB1-205ENST00000417137 ANKRD24Q8TF21 1146 aa31.47■■■□□ 2.63
SMARCB1-205ENST00000417137 GLI3P10071 1580 aa31.47■■■□□ 2.63
SMARCB1-205ENST00000417137 NPC1L1Q9UHC9 1359 aa31.45■■■□□ 2.63
SMARCB1-205ENST00000417137 A0A0G2JS52 829 aa31.45■■■□□ 2.63
SMARCB1-205ENST00000417137 RGS12O14924 1447 aa31.45■■■□□ 2.63
SMARCB1-205ENST00000417137 MYT1Q01538 1121 aa31.45■■■□□ 2.63
SMARCB1-205ENST00000417137 SEPT12Q8IYM1 358 aa31.45■■■□□ 2.63
SMARCB1-205ENST00000417137 LTN1O94822 1766 aa31.45■■■□□ 2.62
SMARCB1-205ENST00000417137 ERBB3P21860 1342 aa31.45■■■□□ 2.62
SMARCB1-205ENST00000417137 PPM1GO15355 546 aaPredicted RBP31.44■■■□□ 2.62
SMARCB1-205ENST00000417137 CC2D1BQ5T0F9 858 aaKnown RBP31.44■■■□□ 2.62
SMARCB1-205ENST00000417137 BARGINQ6ZT62 677 aa31.44■■■□□ 2.62
SMARCB1-205ENST00000417137 CARD10Q9BWT7 1032 aa31.44■■■□□ 2.62
SMARCB1-205ENST00000417137 EMILIN1Q9Y6C2 1016 aa31.43■■■□□ 2.62
SMARCB1-205ENST00000417137 FLT4P35916 1363 aa31.43■■■□□ 2.62
SMARCB1-205ENST00000417137 LTV1Q96GA3 475 aaPredicted RBP31.42■■■□□ 2.62
SMARCB1-205ENST00000417137 NLRP2Q9NX02 1062 aa31.42■■■□□ 2.62
SMARCB1-205ENST00000417137 POLKQ9UBT6 870 aa31.42■■■□□ 2.62
SMARCB1-205ENST00000417137 ANKRD26Q9UPS8 1709 aa31.4■■■□□ 2.62
SMARCB1-205ENST00000417137 INSRP06213 1382 aa31.39■■■□□ 2.62
SMARCB1-205ENST00000417137 HSP90AB2PQ58FF8 381 aa31.38■■■□□ 2.61
SMARCB1-205ENST00000417137 RGPD5Q99666 1765 aa31.36■■■□□ 2.61
SMARCB1-205ENST00000417137 SMG6Q86US8 1419 aaKnown RBP31.36■■■□□ 2.61
SMARCB1-205ENST00000417137 DDX10Q13206 875 aaKnown RBP31.36■■■□□ 2.61
SMARCB1-205ENST00000417137 CNGB1Q14028 1251 aaPredicted RBP31.36■■■□□ 2.61
SMARCB1-205ENST00000417137 CDCA7Q9BWT1 371 aaPredicted RBP31.36■■■□□ 2.61
SMARCB1-205ENST00000417137 ZNF316A6NFI3 1004 aaPredicted RBP31.33■■■□□ 2.61
SMARCB1-205ENST00000417137 KRT27Q7Z3Y8 459 aa31.32■■■□□ 2.6
SMARCB1-205ENST00000417137 PDE3BQ13370 1112 aa31.28■■■□□ 2.6
SMARCB1-205ENST00000417137 MAP2P11137 1827 aaKnown RBP31.28■■■□□ 2.6
SMARCB1-205ENST00000417137 PEAK1Q9H792 1746 aa31.27■■■□□ 2.6
SMARCB1-205ENST00000417137 IL2RBP14784 551 aa31.25■■■□□ 2.59
SMARCB1-205ENST00000417137 MTHFSP49914 203 aa31.25■■■□□ 2.59
SMARCB1-205ENST00000417137 DDB1Q16531 1140 aa31.25■■■□□ 2.59
SMARCB1-205ENST00000417137 NBPF6Q5VWK0 638 aa31.25■■■□□ 2.59
SMARCB1-205ENST00000417137 NBPF4Q96M43 638 aa31.25■■■□□ 2.59
SMARCB1-205ENST00000417137 THSD7AQ9UPZ6 1657 aa31.24■■■□□ 2.59
SMARCB1-205ENST00000417137 EXOC5O00471 708 aa31.23■■■□□ 2.59
SMARCB1-205ENST00000417137 FAM208AQ9UK61 1670 aaKnown RBP31.22■■■□□ 2.59
SMARCB1-205ENST00000417137 EIF4A2Q14240 407 aaKnown RBP31.21■■■□□ 2.59
SMARCB1-205ENST00000417137 DISP2A7MBM2 1401 aa31.19■■■□□ 2.58
SMARCB1-205ENST00000417137 USHBP1Q8N6Y0 703 aa31.17■■■□□ 2.58
SMARCB1-205ENST00000417137 RAPGEF4Q8WZA2 1011 aa31.17■■■□□ 2.58
SMARCB1-205ENST00000417137 EYA1Q99502 592 aa31.17■■■□□ 2.58
SMARCB1-205ENST00000417137 FAM196AQ6ZSG2 479 aa31.15■■■□□ 2.58
SMARCB1-205ENST00000417137 BRWD3Q6RI45 1802 aa31.14■■■□□ 2.58
SMARCB1-205ENST00000417137 PARP4Q9UKK3 1724 aaKnown RBP31.13■■■□□ 2.57
SMARCB1-205ENST00000417137 TATP17735 454 aaPredicted RBP31.13■■■□□ 2.57
SMARCB1-205ENST00000417137 PPP2R1AP30153 589 aa31.13■■■□□ 2.57
SMARCB1-205ENST00000417137 RALBP1Q15311 655 aa31.13■■■□□ 2.57
SMARCB1-205ENST00000417137 CCDC125Q86Z20 511 aa31.13■■■□□ 2.57
SMARCB1-205ENST00000417137 CFAP53Q96M91 514 aa31.13■■■□□ 2.57
SMARCB1-205ENST00000417137 FAM182BQ5T319 152 aa31.12■■■□□ 2.57
SMARCB1-205ENST00000417137 IL13P35225 146 aa31.11■■■□□ 2.57
SMARCB1-205ENST00000417137 PARD3Q8TEW0 1356 aa31.1■■■□□ 2.57
SMARCB1-205ENST00000417137 DIAPH1O60610 1272 aaKnown RBP31.1■■■□□ 2.57
SMARCB1-205ENST00000417137 IGSF1Q8N6C5 1336 aa31.08■■■□□ 2.57
SMARCB1-205ENST00000417137 ZCRB1Q8TBF4 217 aaKnown RBP31.08■■■□□ 2.57
SMARCB1-205ENST00000417137 TNS2Q63HR2 1409 aa31.07■■■□□ 2.57
SMARCB1-205ENST00000417137 MARCH10Q8NA82 808 aaPredicted RBP31.07■■■□□ 2.56
SMARCB1-205ENST00000417137 WNK3Q9BYP7 1800 aa31.07■■■□□ 2.56
SMARCB1-205ENST00000417137 RGPD2P0DJD1 1756 aa31.06■■■□□ 2.56
SMARCB1-205ENST00000417137 NCAPD2Q15021 1401 aa31.06■■■□□ 2.56
SMARCB1-205ENST00000417137 LRRC37A3O60309 1634 aa31.06■■■□□ 2.56
SMARCB1-205ENST00000417137 SF3B2Q13435 895 aaKnown RBP31.05■■■□□ 2.56
SMARCB1-205ENST00000417137 OVOS2A0A0G2JMS6 1433 aa31.05■■■□□ 2.56
SMARCB1-205ENST00000417137 DDX54Q8TDD1 881 aaKnown RBP31.04■■■□□ 2.56
SMARCB1-205ENST00000417137 MEGF6O75095 1541 aa31.03■■■□□ 2.56
SMARCB1-205ENST00000417137 SULT6B1Q6IMI4 303 aa31.01■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms