RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CCDC125Q86Z20 511 aa19.62■□□□□ 0.73
USP4-203ENST00000415188 SPATA31A5Q5VU36 1347 aa19.61■□□□□ 0.73
USP4-203ENST00000415188 SPATA31A7Q8IWB4 1347 aa19.61■□□□□ 0.73
USP4-203ENST00000415188 EVC2Q86UK5 1308 aa19.6■□□□□ 0.73
USP4-203ENST00000415188 STRN4Q9NRL3 753 aa19.6■□□□□ 0.73
USP4-203ENST00000415188 NRKQ7Z2Y5 1582 aa19.59■□□□□ 0.73
USP4-203ENST00000415188 USP19O94966 1318 aa19.59■□□□□ 0.73
USP4-203ENST00000415188 PPP2R1AP30153 589 aa19.59■□□□□ 0.73
USP4-203ENST00000415188 USP6P35125 1406 aa19.58■□□□□ 0.72
USP4-203ENST00000415188 DEFB132Q7Z7B7 95 aa19.57■□□□□ 0.72
USP4-203ENST00000415188 SPATA31A1Q5TZJ5 1347 aa19.56■□□□□ 0.72
USP4-203ENST00000415188 FAM182BQ5T319 152 aa19.55■□□□□ 0.72
USP4-203ENST00000415188 GCP02774 474 aa19.54■□□□□ 0.72
USP4-203ENST00000415188 RRP1P56182 461 aaKnown RBP19.54■□□□□ 0.72
USP4-203ENST00000415188 B4GALNT3Q6L9W6 998 aa19.54■□□□□ 0.72
USP4-203ENST00000415188 RCAN3Q9UKA8 241 aa19.54■□□□□ 0.72
USP4-203ENST00000415188 CAMTA1Q9Y6Y1 1673 aa19.54■□□□□ 0.72
USP4-203ENST00000415188 CPDO75976 1380 aa19.54■□□□□ 0.72
USP4-203ENST00000415188 PUS7Q96PZ0 661 aaKnown RBP19.54■□□□□ 0.72
USP4-203ENST00000415188 THSD7AQ9UPZ6 1657 aa19.54■□□□□ 0.72
USP4-203ENST00000415188 SSH2Q76I76 1423 aa19.53■□□□□ 0.72
USP4-203ENST00000415188 EVA1CP58658 441 aa19.53■□□□□ 0.72
USP4-203ENST00000415188 NLRP6P59044 892 aa19.53■□□□□ 0.72
USP4-203ENST00000415188 SF3B2Q13435 895 aaKnown RBP19.53■□□□□ 0.72
USP4-203ENST00000415188 WDR43Q15061 677 aaKnown RBP eCLIP19.53■□□□□ 0.72
USP4-203ENST00000415188 USP35Q9P2H5 1018 aa19.53■□□□□ 0.72
USP4-203ENST00000415188 ZRANB1Q9UGI0 708 aa19.53■□□□□ 0.72
USP4-203ENST00000415188 LMO7Q8WWI1 1683 aa19.52■□□□□ 0.71
USP4-203ENST00000415188 ZBTB7CA1YPR0 619 aa19.51■□□□□ 0.71
USP4-203ENST00000415188 LARP1Q6PKG0 1096 aaKnown RBP19.51■□□□□ 0.71
USP4-203ENST00000415188 FANCIQ9NVI1 1328 aa19.51■□□□□ 0.71
USP4-203ENST00000415188 PIK3C2AO00443 1686 aa19.5■□□□□ 0.71
USP4-203ENST00000415188 CCDC136Q96JN2 1154 aa19.49■□□□□ 0.71
USP4-203ENST00000415188 TTC21BQ7Z4L5 1316 aa19.49■□□□□ 0.71
USP4-203ENST00000415188 SLIT3O75094 1523 aa19.48■□□□□ 0.71
USP4-203ENST00000415188 NGEFQ8N5V2 710 aa19.48■□□□□ 0.71
USP4-203ENST00000415188 SRCAPQ6ZRS2 3230 aa19.48■□□□□ 0.71
USP4-203ENST00000415188 ADAMTS8Q9UP79 889 aa19.48■□□□□ 0.71
USP4-203ENST00000415188 ZNF692Q9BU19 519 aaPredicted RBP19.47■□□□□ 0.71
USP4-203ENST00000415188 AKAP12Q02952 1782 aa19.47■□□□□ 0.71
USP4-203ENST00000415188 COL5A2P05997 1499 aaPredicted RBP19.46■□□□□ 0.71
USP4-203ENST00000415188 CPSF1Q10570 1443 aaKnown RBP19.46■□□□□ 0.71
USP4-203ENST00000415188 BARGINQ6ZT62 677 aa19.46■□□□□ 0.71
USP4-203ENST00000415188 TCP11L2Q8N4U5 519 aa19.45■□□□□ 0.7
USP4-203ENST00000415188 SOX12O15370 315 aa19.44■□□□□ 0.7
USP4-203ENST00000415188 BAG6P46379 1132 aa19.44■□□□□ 0.7
USP4-203ENST00000415188 AATKQ6ZMQ8 1374 aa19.44■□□□□ 0.7
USP4-203ENST00000415188 ZNF521Q96K83 1311 aa19.43■□□□□ 0.7
USP4-203ENST00000415188 EN1Q05925 392 aaPredicted RBP19.42■□□□□ 0.7
USP4-203ENST00000415188 TTC21AQ8NDW8 1320 aa19.42■□□□□ 0.7
USP4-203ENST00000415188 CARD14Q9BXL6 1004 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 AXIN2Q9Y2T1 843 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 RGPD1P0DJD0 1748 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 SENP3-EIF4A1A0A087X0R7 540 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 FAM196AQ6ZSG2 479 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.41■□□□□ 0.7
USP4-203ENST00000415188 CDCA7LQ96GN5 454 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 SALL2Q9Y467 1007 aaPredicted RBP19.41■□□□□ 0.7
USP4-203ENST00000415188 NSD2O96028 1365 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 NINLQ9Y2I6 1382 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 CRB1P82279 1406 aa19.41■□□□□ 0.7
USP4-203ENST00000415188 CD163L1Q9NR16 1453 aa19.4■□□□□ 0.7
USP4-203ENST00000415188 COL18A1P39060 1754 aa19.4■□□□□ 0.7
USP4-203ENST00000415188 TRIM37O94972 964 aa19.4■□□□□ 0.7
USP4-203ENST00000415188 MON2Q7Z3U7 1717 aa19.4■□□□□ 0.7
USP4-203ENST00000415188 ARHGEF25Q86VW2 580 aa19.4■□□□□ 0.7
USP4-203ENST00000415188 NSD3Q9BZ95 1437 aa19.4■□□□□ 0.7
USP4-203ENST00000415188 SLC12A5Q9H2X9 1139 aa19.4■□□□□ 0.7
USP4-203ENST00000415188 THRAP3Q9Y2W1 955 aaKnown RBP19.4■□□□□ 0.7
USP4-203ENST00000415188 TNS1Q9HBL0 1735 aaKnown RBP19.39■□□□□ 0.69
USP4-203ENST00000415188 ANP32EQ9BTT0 268 aa19.39■□□□□ 0.69
USP4-203ENST00000415188 KCNH5Q8NCM2 988 aa19.38■□□□□ 0.69
USP4-203ENST00000415188 NFAT5O94916 1531 aa19.38■□□□□ 0.69
USP4-203ENST00000415188 GOLGA2Q08379 1002 aa19.37■□□□□ 0.69
USP4-203ENST00000415188 TOM1L2Q6ZVM7 507 aa19.37■□□□□ 0.69
USP4-203ENST00000415188 NME9Q86XW9 330 aa19.37■□□□□ 0.69
USP4-203ENST00000415188 DISP2A7MBM2 1401 aa19.36■□□□□ 0.69
USP4-203ENST00000415188 ANKRD36BQ8N2N9 1353 aa19.36■□□□□ 0.69
USP4-203ENST00000415188 PSDA5PKW4 1024 aaPredicted RBP19.35■□□□□ 0.69
USP4-203ENST00000415188 EZH2Q15910 746 aaKnown RBP19.35■□□□□ 0.69
USP4-203ENST00000415188 WDR17Q8IZU2 1322 aa19.35■□□□□ 0.69
USP4-203ENST00000415188 PARP4Q9UKK3 1724 aaKnown RBP19.35■□□□□ 0.69
USP4-203ENST00000415188 HDGFL2Q7Z4V5 671 aaPredicted RBP19.35■□□□□ 0.69
USP4-203ENST00000415188 EXOC6Q8TAG9 804 aa19.35■□□□□ 0.69
USP4-203ENST00000415188 A0A1W2PP64 1363 aa19.34■□□□□ 0.69
USP4-203ENST00000415188 USP31Q70CQ4 1352 aa19.34■□□□□ 0.69
USP4-203ENST00000415188 CGNL1Q0VF96 1302 aa19.34■□□□□ 0.69
USP4-203ENST00000415188 DUSP27Q5VZP5 1158 aa19.34■□□□□ 0.69
USP4-203ENST00000415188 RGPD5Q99666 1765 aa19.33■□□□□ 0.68
USP4-203ENST00000415188 APBA3O96018 575 aa19.33■□□□□ 0.68
USP4-203ENST00000415188 EDC4Q6P2E9 1401 aaKnown RBP19.32■□□□□ 0.68
USP4-203ENST00000415188 CSB-PGBD3P0DP91 1061 aa19.32■□□□□ 0.68
USP4-203ENST00000415188 SLFN5Q08AF3 891 aa19.32■□□□□ 0.68
USP4-203ENST00000415188 MORC1Q86VD1 984 aa19.32■□□□□ 0.68
USP4-203ENST00000415188 TRMT2AQ8IZ69 625 aaKnown RBP19.32■□□□□ 0.68
USP4-203ENST00000415188 CAMKK2Q96RR4 588 aa19.32■□□□□ 0.68
USP4-203ENST00000415188 TERF2IPQ9NYB0 399 aa19.32■□□□□ 0.68
USP4-203ENST00000415188 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.31■□□□□ 0.68
USP4-203ENST00000415188 LRRC37A3O60309 1634 aa19.31■□□□□ 0.68
USP4-203ENST00000415188 ANKRD26Q9UPS8 1709 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms