RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 CFPP27918 469 aa1.54□□□□□ -2.16
RNU4-88P-201ENST00000411220 FOXR1Q6PIV2 292 aa1.54□□□□□ -2.16
RNU4-88P-201ENST00000411220 BHLHA9Q7RTU4 235 aa1.54□□□□□ -2.16
RNU4-88P-201ENST00000411220 TRIM41Q8WV44 630 aa1.54□□□□□ -2.16
RNU4-88P-201ENST00000411220 NACC1Q96RE7 527 aa1.54□□□□□ -2.16
RNU4-88P-201ENST00000411220 MED26O95402 600 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 JUNBP17275 347 aaPredicted RBP1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 MX2P20592 715 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 NFKB2Q00653 900 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 ECM1Q16610 540 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 C1QL4Q86Z23 238 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 CILP2Q8IUL8 1156 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 CDCA7LQ96GN5 454 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 KLF16Q9BXK1 252 aaPredicted RBP1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 FAM198AQ9UFP1 575 aa1.53□□□□□ -2.16
RNU4-88P-201ENST00000411220 GPR25O00155 361 aa1.52□□□□□ -2.17
RNU4-88P-201ENST00000411220 MAP2K3P46734 347 aa1.52□□□□□ -2.17
RNU4-88P-201ENST00000411220 CBLBQ13191 982 aa1.52□□□□□ -2.17
RNU4-88P-201ENST00000411220 ZXDCQ2QGD7 858 aaPredicted RBP1.52□□□□□ -2.17
RNU4-88P-201ENST00000411220 TP53INP1Q96A56 240 aa1.52□□□□□ -2.17
RNU4-88P-201ENST00000411220 GDF2Q9UK05 429 aaPredicted RBP1.52□□□□□ -2.17
RNU4-88P-201ENST00000411220 NUDT18Q6ZVK8 323 aa1.51□□□□□ -2.17
RNU4-88P-201ENST00000411220 SLC38A3Q99624 504 aa1.51□□□□□ -2.17
RNU4-88P-201ENST00000411220 EPAS1Q99814 870 aa1.51□□□□□ -2.17
RNU4-88P-201ENST00000411220 MFRPQ9BY79 579 aa1.51□□□□□ -2.17
RNU4-88P-201ENST00000411220 TNFRSF18Q9Y5U5 241 aa1.51□□□□□ -2.17
RNU4-88P-201ENST00000411220 FOXD2O60548 495 aaPredicted RBP1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 ZIC2O95409 532 aaPredicted RBP1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 WNT11O96014 354 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 ADRB1P08588 477 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 ITGB5P18084 799 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 PRRT3Q5FWE3 981 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 PRRT2Q7Z6L0 340 aaPredicted RBP1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 SLC51AQ86UW1 340 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 LRRC56Q8IYG6 542 aaPredicted RBP1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 FAM160A2Q8N612 972 aaPredicted RBP1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 C20orf173Q96LM9 149 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 PLVAPQ9BX97 442 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 ZFAND3Q9H8U3 227 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 PRDM9Q9NQV7 894 aa1.5□□□□□ -2.17
RNU4-88P-201ENST00000411220 PRSS12P56730 875 aa1.49□□□□□ -2.17
RNU4-88P-201ENST00000411220 MEIOBQ8N635 442 aa1.49□□□□□ -2.17
RNU4-88P-201ENST00000411220 SLC4A9Q96Q91 983 aa1.49□□□□□ -2.17
RNU4-88P-201ENST00000411220 CUEDC1Q9NWM3 386 aaPredicted RBP1.49□□□□□ -2.17
RNU4-88P-201ENST00000411220 PLEKHG3A1L390 1219 aa1.48□□□□□ -2.17
RNU4-88P-201ENST00000411220 RBM33Q96EV2 1170 aaKnown RBP1.48□□□□□ -2.17
RNU4-88P-201ENST00000411220 TRIM11Q96F44 468 aa1.48□□□□□ -2.17
RNU4-88P-201ENST00000411220 GMCL1Q96IK5 515 aa1.48□□□□□ -2.17
RNU4-88P-201ENST00000411220 SLITRK6Q9H5Y7 841 aa1.48□□□□□ -2.17
RNU4-88P-201ENST00000411220 FAM53CQ9NYF3 392 aa1.48□□□□□ -2.17
RNU4-88P-201ENST00000411220 SRRDQ9UH36 339 aa1.48□□□□□ -2.17
RNU4-88P-201ENST00000411220 SPDYE3A6NKU9 549 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 SYN1P17600 705 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 HOXA5P20719 270 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 HMGA2P52926 109 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 CRB2Q5IJ48 1285 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 ABI1Q8IZP0 508 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 GOLGA6L1Q8N7Z2 621 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 ZNF837Q96EG3 531 aaPredicted RBP1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 BTBD6Q96KE9 485 aa1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 TSEN34Q9BSV6 310 aaKnown RBP1.47□□□□□ -2.17
RNU4-88P-201ENST00000411220 CFHP08603 1231 aa1.46□□□□□ -2.18
RNU4-88P-201ENST00000411220 SPINK2P20155 84 aa1.46□□□□□ -2.18
RNU4-88P-201ENST00000411220 BHLHE22Q8NFJ8 381 aaPredicted RBP1.46□□□□□ -2.18
RNU4-88P-201ENST00000411220 ITPKCQ96DU7 683 aa1.46□□□□□ -2.18
RNU4-88P-201ENST00000411220 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 LRCH2Q5VUJ6 765 aa1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 CBLL1Q75N03 491 aa1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 TXNRD3Q86VQ6 643 aa1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 ZNF764Q96H86 408 aaPredicted RBP1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 ZFP91Q96JP5 570 aaPredicted RBP1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 SORCS2Q96PQ0 1159 aa1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 TLL2Q9Y6L7 1015 aa1.45□□□□□ -2.18
RNU4-88P-201ENST00000411220 GRNP28799 593 aaKnown RBP1.44□□□□□ -2.18
RNU4-88P-201ENST00000411220 KLRG1Q96E93 195 aa1.44□□□□□ -2.18
RNU4-88P-201ENST00000411220 THAP11Q96EK4 314 aa1.44□□□□□ -2.18
RNU4-88P-201ENST00000411220 ADGRE1Q14246 886 aa1.43□□□□□ -2.18
RNU4-88P-201ENST00000411220 MBTPS1Q14703 1052 aa1.43□□□□□ -2.18
RNU4-88P-201ENST00000411220 PUS10Q3MIT2 529 aaKnown RBP1.43□□□□□ -2.18
RNU4-88P-201ENST00000411220 SLCO4C1Q6ZQN7 724 aa1.43□□□□□ -2.18
RNU4-88P-201ENST00000411220 TRIM22Q8IYM9 498 aa1.43□□□□□ -2.18
RNU4-88P-201ENST00000411220 C9orf172C9J069 976 aa1.42□□□□□ -2.18
RNU4-88P-201ENST00000411220 FMNL1O95466 1100 aaPredicted RBP1.42□□□□□ -2.18
RNU4-88P-201ENST00000411220 FECHP22830 423 aa1.42□□□□□ -2.18
RNU4-88P-201ENST00000411220 RAP1GAPP47736 663 aa1.42□□□□□ -2.18
RNU4-88P-201ENST00000411220 PUM1Q14671 1186 aaKnown RBP eCLIP1.42□□□□□ -2.18
RNU4-88P-201ENST00000411220 DTX1Q86Y01 620 aa1.42□□□□□ -2.18
RNU4-88P-201ENST00000411220 FSTP19883 344 aa1.41□□□□□ -2.18
RNU4-88P-201ENST00000411220 MSS51Q4VC12 460 aa1.41□□□□□ -2.18
RNU4-88P-201ENST00000411220 GTPBP3Q969Y2 492 aaKnown RBP1.41□□□□□ -2.18
RNU4-88P-201ENST00000411220 SSBP4Q9BWG4 385 aaPredicted RBP1.41□□□□□ -2.18
RNU4-88P-201ENST00000411220 BRIP1Q9BX63 1249 aa1.41□□□□□ -2.18
RNU4-88P-201ENST00000411220 MEGF11A6BM72 1044 aa1.4□□□□□ -2.19
RNU4-88P-201ENST00000411220 CSRP2Q16527 193 aa1.4□□□□□ -2.19
RNU4-88P-201ENST00000411220 INTS5Q6P9B9 1019 aaKnown RBP1.4□□□□□ -2.19
RNU4-88P-201ENST00000411220 TGFB1P01137 390 aa1.39□□□□□ -2.19
RNU4-88P-201ENST00000411220 EPXP11678 715 aa1.39□□□□□ -2.19
RNU4-88P-201ENST00000411220 INSRRP14616 1297 aa1.39□□□□□ -2.19
RNU4-88P-201ENST00000411220 GRIK1P39086 918 aa1.39□□□□□ -2.19
RNU4-88P-201ENST00000411220 TMEM132AQ24JP5 1023 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms