RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SPOCK3Q9BQ16 436 aa7.48□□□□□ -1.21
HMGB1-204ENST00000399489 ARID5BQ14865 1188 aa7.47□□□□□ -1.21
HMGB1-204ENST00000399489 POLR3EQ9NVU0 708 aa7.47□□□□□ -1.21
HMGB1-204ENST00000399489 QPCTQ16769 361 aa7.47□□□□□ -1.21
HMGB1-204ENST00000399489 KRTAP9-8Q9BYQ0 159 aa7.47□□□□□ -1.21
HMGB1-204ENST00000399489 ADH1CP00326 375 aa7.46□□□□□ -1.22
HMGB1-204ENST00000399489 SCARF1Q14162 830 aa7.46□□□□□ -1.22
HMGB1-204ENST00000399489 FOXJ1Q92949 421 aa7.46□□□□□ -1.22
HMGB1-204ENST00000399489 DDRGK1Q96HY6 314 aa7.46□□□□□ -1.22
HMGB1-204ENST00000399489 RANGAP1P46060 587 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-204ENST00000399489 C14orf37Q86TY3 774 aa7.45□□□□□ -1.22
HMGB1-204ENST00000399489 GPKOWQ92917 476 aaPredicted RBP eCLIP7.45□□□□□ -1.22
HMGB1-204ENST00000399489 PER1O15534 1290 aaPredicted RBP7.44□□□□□ -1.22
HMGB1-204ENST00000399489 WDR4P57081 412 aaKnown RBP7.44□□□□□ -1.22
HMGB1-204ENST00000399489 NR5A1Q13285 461 aa7.44□□□□□ -1.22
HMGB1-204ENST00000399489 RTL5Q5HYW3 569 aaPredicted RBP7.44□□□□□ -1.22
HMGB1-204ENST00000399489 SKIV2LQ15477 1246 aaKnown RBP7.44□□□□□ -1.22
HMGB1-204ENST00000399489 CDK15Q96Q40 435 aa7.44□□□□□ -1.22
HMGB1-204ENST00000399489 BMP1P13497 986 aa7.43□□□□□ -1.22
HMGB1-204ENST00000399489 SH3D19Q5HYK7 790 aa7.42□□□□□ -1.22
HMGB1-204ENST00000399489 TRIM46Q7Z4K8 759 aa7.42□□□□□ -1.22
HMGB1-204ENST00000399489 PNMA1Q8ND90 353 aa7.42□□□□□ -1.22
HMGB1-204ENST00000399489 KDM4CQ9H3R0 1056 aa7.42□□□□□ -1.22
HMGB1-204ENST00000399489 UPP2O95045 317 aa7.41□□□□□ -1.22
HMGB1-204ENST00000399489 MRPL14Q6P1L8 145 aaKnown RBP7.41□□□□□ -1.22
HMGB1-204ENST00000399489 MAGEB6P1A0A0J9YX57 407 aa7.4□□□□□ -1.23
HMGB1-204ENST00000399489 ZIC2O95409 532 aaPredicted RBP7.4□□□□□ -1.23
HMGB1-204ENST00000399489 TIMP2P16035 220 aa7.4□□□□□ -1.23
HMGB1-204ENST00000399489 PLA2G4EQ3MJ16 856 aa7.4□□□□□ -1.23
HMGB1-204ENST00000399489 VASH1Q7L8A9 365 aaPredicted RBP7.4□□□□□ -1.23
HMGB1-204ENST00000399489 ZFP42Q96MM3 310 aa7.39□□□□□ -1.23
HMGB1-204ENST00000399489 PODXL2Q9NZ53 605 aa7.39□□□□□ -1.23
HMGB1-204ENST00000399489 MAP4K5Q9Y4K4 846 aa7.39□□□□□ -1.23
HMGB1-204ENST00000399489 PROCP04070 461 aa7.38□□□□□ -1.23
HMGB1-204ENST00000399489 CTDSPL2Q05D32 466 aa7.38□□□□□ -1.23
HMGB1-204ENST00000399489 C1QTNF2Q9BXJ5 285 aa7.38□□□□□ -1.23
HMGB1-204ENST00000399489 GPBP1L1Q9HC44 474 aaPredicted RBP7.38□□□□□ -1.23
HMGB1-204ENST00000399489 ZC3H4Q9UPT8 1303 aaKnown RBP7.38□□□□□ -1.23
HMGB1-204ENST00000399489 COBLO75128 1261 aa7.38□□□□□ -1.23
HMGB1-204ENST00000399489 SH3BP5LQ7L8J4 393 aa7.38□□□□□ -1.23
HMGB1-204ENST00000399489 TRMT44Q8IYL2 757 aaKnown RBP7.38□□□□□ -1.23
HMGB1-204ENST00000399489 PURBQ96QR8 312 aaKnown RBP7.38□□□□□ -1.23
HMGB1-204ENST00000399489 CARD14Q9BXL6 1004 aa7.38□□□□□ -1.23
HMGB1-204ENST00000399489 KRTAP4-5Q9BYR2 181 aa7.38□□□□□ -1.23
HMGB1-204ENST00000399489 CDV3Q9UKY7 258 aaKnown RBP7.38□□□□□ -1.23
HMGB1-204ENST00000399489 FSHRP23945 695 aa7.37□□□□□ -1.23
HMGB1-204ENST00000399489 C4orf48Q5BLP8 95 aa7.37□□□□□ -1.23
HMGB1-204ENST00000399489 PDXDC2PQ6P474 469 aa7.37□□□□□ -1.23
HMGB1-204ENST00000399489 SH3RF1Q7Z6J0 888 aa7.37□□□□□ -1.23
HMGB1-204ENST00000399489 ARHGAP9Q9BRR9 750 aa7.37□□□□□ -1.23
HMGB1-204ENST00000399489 EMILIN1Q9Y6C2 1016 aa7.37□□□□□ -1.23
HMGB1-204ENST00000399489 AP1G2O75843 785 aa7.36□□□□□ -1.23
HMGB1-204ENST00000399489 PPP2R2DQ66LE6 453 aa7.36□□□□□ -1.23
HMGB1-204ENST00000399489 ZBTB33Q86T24 672 aa7.36□□□□□ -1.23
HMGB1-204ENST00000399489 KRTAP4-11Q9BYQ6 195 aa7.36□□□□□ -1.23
HMGB1-204ENST00000399489 FAM117AQ9C073 453 aa7.36□□□□□ -1.23
HMGB1-204ENST00000399489 FKBPLQ9UIM3 349 aa7.36□□□□□ -1.23
HMGB1-204ENST00000399489 SLURP2P0DP57 97 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 SLC10A4Q96EP9 437 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 PGPEP1Q9NXJ5 209 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 GRM5P41594 1212 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 PTK2Q05397 1052 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 CCDC116Q8IYX3 515 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 GALNT6Q8NCL4 622 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 PROCA1Q8NCQ7 364 aaPredicted RBP7.35□□□□□ -1.23
HMGB1-204ENST00000399489 ITPKCQ96DU7 683 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 KLF16Q9BXK1 252 aaPredicted RBP7.35□□□□□ -1.23
HMGB1-204ENST00000399489 ZFAND3Q9H8U3 227 aa7.35□□□□□ -1.23
HMGB1-204ENST00000399489 NR3C2P08235 984 aa7.34□□□□□ -1.23
HMGB1-204ENST00000399489 BMP2P12643 396 aa7.34□□□□□ -1.23
HMGB1-204ENST00000399489 C6orf118Q5T5N4 469 aa7.34□□□□□ -1.23
HMGB1-204ENST00000399489 LRRN4Q8WUT4 740 aa7.34□□□□□ -1.23
HMGB1-204ENST00000399489 SCARF2Q96GP6 870 aaPredicted RBP7.34□□□□□ -1.23
HMGB1-204ENST00000399489 PCMTD1Q96MG8 357 aaPredicted RBP7.34□□□□□ -1.23
HMGB1-204ENST00000399489 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.34□□□□□ -1.23
HMGB1-204ENST00000399489 MAN1A2O60476 641 aa7.33□□□□□ -1.24
HMGB1-204ENST00000399489 ERFEQ4G0M1 354 aa7.33□□□□□ -1.24
HMGB1-204ENST00000399489 DHX9Q08211 1270 aaKnown RBP7.32□□□□□ -1.24
HMGB1-204ENST00000399489 LAMC2Q13753 1193 aa7.32□□□□□ -1.24
HMGB1-204ENST00000399489 NR6A1Q15406 480 aa7.32□□□□□ -1.24
HMGB1-204ENST00000399489 TRIM52Q96A61 297 aa7.32□□□□□ -1.24
HMGB1-204ENST00000399489 TSEN34Q9BSV6 310 aaKnown RBP7.32□□□□□ -1.24
HMGB1-204ENST00000399489 GPSM3Q9Y4H4 160 aa7.32□□□□□ -1.24
HMGB1-204ENST00000399489 LINC00528Q8N1L1 170 aa7.32□□□□□ -1.24
HMGB1-204ENST00000399489 MEIOBQ8N635 442 aa7.32□□□□□ -1.24
HMGB1-204ENST00000399489 ITGB2P05107 769 aa7.31□□□□□ -1.24
HMGB1-204ENST00000399489 NEUROD2Q15784 382 aa7.3□□□□□ -1.24
HMGB1-204ENST00000399489 KCTD15Q96SI1 283 aaPredicted RBP7.3□□□□□ -1.24
HMGB1-204ENST00000399489 USP17L8P0C7I0 530 aa7.29□□□□□ -1.24
HMGB1-204ENST00000399489 NBPF20Q3BBV1 942 aa7.29□□□□□ -1.24
HMGB1-204ENST00000399489 TMEM259Q4ZIN3 620 aa7.29□□□□□ -1.24
HMGB1-204ENST00000399489 PPP1R26Q5T8A7 1209 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-204ENST00000399489 GOPCQ9HD26 462 aa7.29□□□□□ -1.24
HMGB1-204ENST00000399489 ARID1BQ8NFD5 2236 aaPredicted RBP7.28□□□□□ -1.24
HMGB1-204ENST00000399489 RFC5P40937 340 aa7.28□□□□□ -1.24
HMGB1-204ENST00000399489 MARSP56192 900 aaKnown RBP7.28□□□□□ -1.24
HMGB1-204ENST00000399489 DZIP3Q86Y13 1208 aaKnown RBP7.27□□□□□ -1.25
HMGB1-204ENST00000399489 SOBPA7XYQ1 873 aa7.27□□□□□ -1.25
HMGB1-204ENST00000399489 ADAM32Q8TC27 787 aa7.27□□□□□ -1.25
HMGB1-204ENST00000399489 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms