RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 PCDHB15Q9Y5E8 787 aa21.52■■□□□ 1.03
NUP50-202ENST00000396096 ACEP12821 1306 aa21.51■■□□□ 1.03
NUP50-202ENST00000396096 SSH2Q76I76 1423 aa21.51■■□□□ 1.03
NUP50-202ENST00000396096 RGS3P49796 1198 aa21.5■■□□□ 1.03
NUP50-202ENST00000396096 THEMISQ8N1K5 641 aaPredicted RBP21.5■■□□□ 1.03
NUP50-202ENST00000396096 HMOX1P09601 288 aa21.49■■□□□ 1.03
NUP50-202ENST00000396096 BRPF1P55201 1214 aaPredicted RBP21.49■■□□□ 1.03
NUP50-202ENST00000396096 SLC26A8Q96RN1 970 aa21.49■■□□□ 1.03
NUP50-202ENST00000396096 USP31Q70CQ4 1352 aa21.49■■□□□ 1.03
NUP50-202ENST00000396096 KIF16BQ96L93 1317 aa21.49■■□□□ 1.03
NUP50-202ENST00000396096 FTSJ3Q8IY81 847 aaKnown RBP21.49■■□□□ 1.03
NUP50-202ENST00000396096 AMOTL2Q9Y2J4 779 aa21.49■■□□□ 1.03
NUP50-202ENST00000396096 TRIM27P14373 513 aa21.48■■□□□ 1.03
NUP50-202ENST00000396096 RRS1Q15050 365 aaKnown RBP21.48■■□□□ 1.03
NUP50-202ENST00000396096 ATF7IPQ6VMQ6 1270 aa21.48■■□□□ 1.03
NUP50-202ENST00000396096 DDRGK1Q96HY6 314 aa21.47■■□□□ 1.03
NUP50-202ENST00000396096 RWDD1Q9H446 243 aaPredicted RBP21.47■■□□□ 1.03
NUP50-202ENST00000396096 LMOD3Q0VAK6 560 aa21.47■■□□□ 1.03
NUP50-202ENST00000396096 IFT57Q9NWB7 429 aa21.47■■□□□ 1.03
NUP50-202ENST00000396096 RGPD1P0DJD0 1748 aa21.47■■□□□ 1.03
NUP50-202ENST00000396096 ZNF853P0CG23 659 aa21.46■■□□□ 1.03
NUP50-202ENST00000396096 PEAK1Q9H792 1746 aa21.46■■□□□ 1.03
NUP50-202ENST00000396096 IPO8O15397 1037 aaKnown RBP21.45■■□□□ 1.02
NUP50-202ENST00000396096 DDX19BQ9UMR2 479 aa21.45■■□□□ 1.02
NUP50-202ENST00000396096 TTC21AQ8NDW8 1320 aa21.45■■□□□ 1.02
NUP50-202ENST00000396096 GNAI1P63096 354 aa21.45■■□□□ 1.02
NUP50-202ENST00000396096 NOB1Q9ULX3 412 aaKnown RBP21.45■■□□□ 1.02
NUP50-202ENST00000396096 PIK3R4Q99570 1358 aa21.43■■□□□ 1.02
NUP50-202ENST00000396096 CEP170BQ9Y4F5 1589 aaPredicted RBP21.43■■□□□ 1.02
NUP50-202ENST00000396096 RGPD8O14715 1765 aaPredicted RBP21.42■■□□□ 1.02
NUP50-202ENST00000396096 ANKARQ7Z5J8 1434 aa21.42■■□□□ 1.02
NUP50-202ENST00000396096 EIF4A2Q14240 407 aaKnown RBP21.41■■□□□ 1.02
NUP50-202ENST00000396096 FMN2Q9NZ56 1722 aa21.41■■□□□ 1.02
NUP50-202ENST00000396096 HDAC1Q13547 482 aaPredicted RBP21.41■■□□□ 1.02
NUP50-202ENST00000396096 VAMP4O75379 141 aa21.4■■□□□ 1.02
NUP50-202ENST00000396096 CFAP44Q96MT7 982 aa21.39■■□□□ 1.02
NUP50-202ENST00000396096 PDZRN3Q9UPQ7 1066 aa21.39■■□□□ 1.02
NUP50-202ENST00000396096 USP54Q70EL1 1684 aa21.39■■□□□ 1.01
NUP50-202ENST00000396096 ARHGAP45Q92619 1136 aa21.39■■□□□ 1.01
NUP50-202ENST00000396096 THUMPD2Q9BTF0 503 aaKnown RBP21.39■■□□□ 1.01
NUP50-202ENST00000396096 ITPRIPQ8IWB1 547 aa21.38■■□□□ 1.01
NUP50-202ENST00000396096 TMEM57Q8N5G2 664 aa21.38■■□□□ 1.01
NUP50-202ENST00000396096 MBIPQ9NS73 344 aa21.38■■□□□ 1.01
NUP50-202ENST00000396096 NUTM2FA1L443 756 aa21.37■■□□□ 1.01
NUP50-202ENST00000396096 LAS1LQ9Y4W2 734 aaKnown RBP21.37■■□□□ 1.01
NUP50-202ENST00000396096 PIK3C2AO00443 1686 aa21.37■■□□□ 1.01
NUP50-202ENST00000396096 MRPL50Q8N5N7 158 aaKnown RBP21.37■■□□□ 1.01
NUP50-202ENST00000396096 ZBTB40Q9NUA8 1239 aa21.37■■□□□ 1.01
NUP50-202ENST00000396096 ZNF142P52746 1687 aaPredicted RBP21.36■■□□□ 1.01
NUP50-202ENST00000396096 TRHP20396 242 aaPredicted RBP21.35■■□□□ 1.01
NUP50-202ENST00000396096 ARHGEF10O15013 1369 aa21.35■■□□□ 1.01
NUP50-202ENST00000396096 SULT6B1Q6IMI4 303 aa21.34■■□□□ 1.01
NUP50-202ENST00000396096 SBNO1A3KN83 1393 aa21.34■■□□□ 1.01
NUP50-202ENST00000396096 AEBP1Q8IUX7 1158 aa21.33■■□□□ 1.01
NUP50-202ENST00000396096 CHD2O14647 1828 aaKnown RBP21.33■■□□□ 1.01
NUP50-202ENST00000396096 PLPPR3Q6T4P5 718 aa21.32■■□□□ 1
NUP50-202ENST00000396096 TSPYL6Q8N831 410 aa21.32■■□□□ 1
NUP50-202ENST00000396096 MARF1Q9Y4F3 1742 aaKnown RBP21.32■■□□□ 1
NUP50-202ENST00000396096 HSP90AB2PQ58FF8 381 aa21.32■■□□□ 1
NUP50-202ENST00000396096 SMC5Q8IY18 1101 aa21.32■■□□□ 1
NUP50-202ENST00000396096 FLT4P35916 1363 aa21.31■■□□□ 1
NUP50-202ENST00000396096 MAP3K19Q56UN5 1328 aa21.31■■□□□ 1
NUP50-202ENST00000396096 TWISTNBQ3B726 338 aaPredicted RBP21.31■■□□□ 1
NUP50-202ENST00000396096 NGDNQ8NEJ9 315 aaKnown RBP21.31■■□□□ 1
NUP50-202ENST00000396096 CHMP4BQ9H444 224 aaKnown RBP21.31■■□□□ 1
NUP50-202ENST00000396096 USP19O94966 1318 aa21.31■■□□□ 1
NUP50-202ENST00000396096 KCNA6P17658 529 aa21.3■■□□□ 1
NUP50-202ENST00000396096 FAM83GA6ND36 823 aa21.3■■□□□ 1
NUP50-202ENST00000396096 ABCC4O15439 1325 aa21.29■■□□□ 1
NUP50-202ENST00000396096 KDRP35968 1356 aa21.29■■□□□ 1
NUP50-202ENST00000396096 KIF24Q5T7B8 1368 aa21.29■■□□□ 1
NUP50-202ENST00000396096 C8orf58Q8NAV2 365 aa21.28■■□□□ 1
NUP50-202ENST00000396096 CHL1O00533 1208 aa21.27■■□□□ 1
NUP50-202ENST00000396096 ADAMTSL3P82987 1691 aa21.27■■□□□ 1
NUP50-202ENST00000396096 KIAA0232Q92628 1395 aa21.27■■□□□ 1
NUP50-202ENST00000396096 DCTN1Q14203 1278 aa21.26■□□□□ 0.99
NUP50-202ENST00000396096 ZBTB7BO15156 539 aaPredicted RBP21.26■□□□□ 0.99
NUP50-202ENST00000396096 HAP1P54257 671 aaPredicted RBP21.26■□□□□ 0.99
NUP50-202ENST00000396096 NBR1Q14596 966 aa21.25■□□□□ 0.99
NUP50-202ENST00000396096 API5Q9BZZ5 524 aaKnown RBP21.25■□□□□ 0.99
NUP50-202ENST00000396096 IGSF1Q8N6C5 1336 aa21.25■□□□□ 0.99
NUP50-202ENST00000396096 CRB1P82279 1406 aa21.25■□□□□ 0.99
NUP50-202ENST00000396096 SEC24BO95487 1268 aa21.24■□□□□ 0.99
NUP50-202ENST00000396096 ANKLE2Q86XL3 938 aa21.23■□□□□ 0.99
NUP50-202ENST00000396096 ELL2O00472 640 aaPredicted RBP21.22■□□□□ 0.99
NUP50-202ENST00000396096 SETD1BQ9UPS6 1966 aaKnown RBP21.21■□□□□ 0.99
NUP50-202ENST00000396096 NUCB1Q02818 461 aa21.21■□□□□ 0.99
NUP50-202ENST00000396096 DAXXQ9UER7 740 aaPredicted RBP21.21■□□□□ 0.99
NUP50-202ENST00000396096 AMPHP49418 695 aa21.2■□□□□ 0.98
NUP50-202ENST00000396096 USP35Q9P2H5 1018 aa21.2■□□□□ 0.98
NUP50-202ENST00000396096 LRRC37A3O60309 1634 aa21.2■□□□□ 0.98
NUP50-202ENST00000396096 SOX12O15370 315 aa21.2■□□□□ 0.98
NUP50-202ENST00000396096 NLRP6P59044 892 aa21.2■□□□□ 0.98
NUP50-202ENST00000396096 MCM10Q7L590 875 aa21.2■□□□□ 0.98
NUP50-202ENST00000396096 NWD1Q149M9 1564 aa21.19■□□□□ 0.98
NUP50-202ENST00000396096 EYA1Q99502 592 aa21.19■□□□□ 0.98
NUP50-202ENST00000396096 RTL5Q5HYW3 569 aaPredicted RBP21.18■□□□□ 0.98
NUP50-202ENST00000396096 MTHFSDQ2M296 383 aaKnown RBP21.18■□□□□ 0.98
NUP50-202ENST00000396096 GCC1Q96CN9 775 aa21.18■□□□□ 0.98
NUP50-202ENST00000396096 HTATSF1O43719 755 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms