RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 HOOK3Q86VS8 718 aa17.34■□□□□ 0.37
CCDC50-201ENST00000392455 CENPHQ9H3R5 247 aa17.34■□□□□ 0.37
CCDC50-201ENST00000392455 TAF4BQ92750 862 aa17.34■□□□□ 0.37
CCDC50-201ENST00000392455 CDKL5O76039 1030 aa17.33■□□□□ 0.37
CCDC50-201ENST00000392455 BCL11BQ9C0K0 894 aaPredicted RBP17.33■□□□□ 0.37
CCDC50-201ENST00000392455 LNPKQ9C0E8 428 aa17.33■□□□□ 0.36
CCDC50-201ENST00000392455 TRIM22Q8IYM9 498 aa17.33■□□□□ 0.36
CCDC50-201ENST00000392455 MIA2Q96PC5 1412 aa17.33■□□□□ 0.36
CCDC50-201ENST00000392455 CALCOCO1Q9P1Z2 691 aa17.32■□□□□ 0.36
CCDC50-201ENST00000392455 GNAI1P63096 354 aa17.32■□□□□ 0.36
CCDC50-201ENST00000392455 SERPINC1P01008 464 aa17.32■□□□□ 0.36
CCDC50-201ENST00000392455 GNL3LQ9NVN8 582 aaKnown RBP17.32■□□□□ 0.36
CCDC50-201ENST00000392455 SPECC1LQ69YQ0 1117 aa17.31■□□□□ 0.36
CCDC50-201ENST00000392455 TTLL5Q6EMB2 1281 aa17.31■□□□□ 0.36
CCDC50-201ENST00000392455 SEPT6Q14141 434 aa17.31■□□□□ 0.36
CCDC50-201ENST00000392455 DHX57Q6P158 1386 aaKnown RBP17.31■□□□□ 0.36
CCDC50-201ENST00000392455 LRRC45Q96CN5 670 aa17.31■□□□□ 0.36
CCDC50-201ENST00000392455 CFAP45Q9UL16 551 aa17.3■□□□□ 0.36
CCDC50-201ENST00000392455 CADPSQ9ULU8 1353 aa17.3■□□□□ 0.36
CCDC50-201ENST00000392455 DDX46Q7L014 1031 aaKnown RBP17.3■□□□□ 0.36
CCDC50-201ENST00000392455 FGFR1OPO95684 399 aaKnown RBP17.3■□□□□ 0.36
CCDC50-201ENST00000392455 UBTFL1P0CB47 393 aaPredicted RBP17.3■□□□□ 0.36
CCDC50-201ENST00000392455 FAM114A1Q8IWE2 563 aa17.3■□□□□ 0.36
CCDC50-201ENST00000392455 HOMER2Q9NSB8 354 aa17.3■□□□□ 0.36
CCDC50-201ENST00000392455 TMCO3Q6UWJ1 677 aa17.3■□□□□ 0.36
CCDC50-201ENST00000392455 BBXQ8WY36 941 aaPredicted RBP17.3■□□□□ 0.36
CCDC50-201ENST00000392455 SMTNL1A8MU46 457 aa17.3■□□□□ 0.36
CCDC50-201ENST00000392455 NLRP2Q9NX02 1062 aa17.3■□□□□ 0.36
CCDC50-201ENST00000392455 PABPN1LA6NDY0 278 aaKnown RBP17.29■□□□□ 0.36
CCDC50-201ENST00000392455 CCDC83Q8IWF9 413 aa17.29■□□□□ 0.36
CCDC50-201ENST00000392455 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.29■□□□□ 0.363e-7■■■□□ 17.2
CCDC50-201ENST00000392455 POTEB2H3BUK9 544 aa17.29■□□□□ 0.36
CCDC50-201ENST00000392455 BMS1Q14692 1282 aaKnown RBP17.29■□□□□ 0.36
CCDC50-201ENST00000392455 CCDC150Q8NCX0 1101 aa17.29■□□□□ 0.36
CCDC50-201ENST00000392455 SKIDA1Q1XH10 827 aa17.29■□□□□ 0.36
CCDC50-201ENST00000392455 NOL7Q9UMY1 257 aaKnown RBP17.29■□□□□ 0.36
CCDC50-201ENST00000392455 CCDC57Q2TAC2 916 aa17.29■□□□□ 0.36
CCDC50-201ENST00000392455 LRRFIP2Q9Y608 721 aaKnown RBP17.28■□□□□ 0.36
CCDC50-201ENST00000392455 CUX1P39880 1505 aa17.28■□□□□ 0.36
CCDC50-201ENST00000392455 SMARCA4P51532 1647 aa17.28■□□□□ 0.36
CCDC50-201ENST00000392455 C22orf23Q9BZE7 217 aa17.28■□□□□ 0.36
CCDC50-201ENST00000392455 KIF6Q6ZMV9 814 aa17.27■□□□□ 0.36
CCDC50-201ENST00000392455 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.36
CCDC50-201ENST00000392455 FAM177BA6PVY3 158 aa17.27■□□□□ 0.36
CCDC50-201ENST00000392455 CABP2Q9NPB3 220 aa17.27■□□□□ 0.36
CCDC50-201ENST00000392455 PANK1Q8TE04 598 aa17.26■□□□□ 0.35
CCDC50-201ENST00000392455 CDC45O75419 566 aa17.26■□□□□ 0.35
CCDC50-201ENST00000392455 KIAA1328Q86T90 577 aa17.26■□□□□ 0.35
CCDC50-201ENST00000392455 NAA15Q9BXJ9 866 aaKnown RBP17.26■□□□□ 0.35
CCDC50-201ENST00000392455 GTPBP4Q9BZE4 634 aaKnown RBP17.26■□□□□ 0.35
CCDC50-201ENST00000392455 CEP131Q9UPN4 1083 aa17.25■□□□□ 0.35
CCDC50-201ENST00000392455 SETSIPP0DME0 302 aa17.25■□□□□ 0.35
CCDC50-201ENST00000392455 FSD1Q9BTV5 496 aa17.25■□□□□ 0.35
CCDC50-201ENST00000392455 NACAP1Q9BZK3 213 aa17.25■□□□□ 0.35
CCDC50-201ENST00000392455 ZSCAN12O43309 604 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 WASF1Q92558 559 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 TSNARE1Q96NA8 513 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 RRBP1Q9P2E9 1410 aaKnown RBP17.24■□□□□ 0.35
CCDC50-201ENST00000392455 STK38Q15208 465 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 DNAJC2Q99543 621 aaKnown RBP17.24■□□□□ 0.35
CCDC50-201ENST00000392455 FAM114A2Q9NRY5 505 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 OSCARQ8IYS5 282 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 GGNBP2Q9H3C7 697 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 TNIP1Q15025 636 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 SSX2IPQ9Y2D8 614 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 CCDC6Q16204 474 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 CCDC102AQ96A19 550 aa17.24■□□□□ 0.35
CCDC50-201ENST00000392455 FAM69CQ0P6D2 419 aa17.23■□□□□ 0.35
CCDC50-201ENST00000392455 ZSCAN25Q6NSZ9 544 aa17.23■□□□□ 0.35
CCDC50-201ENST00000392455 PPP4R3AQ6IN85 833 aa17.23■□□□□ 0.35
CCDC50-201ENST00000392455 ARHGAP5Q13017 1502 aa17.23■□□□□ 0.35
CCDC50-201ENST00000392455 HMGB3O15347 200 aaKnown RBP17.23■□□□□ 0.35
CCDC50-201ENST00000392455 SCAPERQ9BY12 1400 aa17.22■□□□□ 0.35
CCDC50-201ENST00000392455 DNAAF4Q8WXU2 420 aa17.22■□□□□ 0.35
CCDC50-201ENST00000392455 SLU7O95391 586 aaKnown RBP17.22■□□□□ 0.35
CCDC50-201ENST00000392455 BRPF1P55201 1214 aaPredicted RBP17.22■□□□□ 0.35
CCDC50-201ENST00000392455 UBXN4Q92575 508 aa17.22■□□□□ 0.35
CCDC50-201ENST00000392455 TANGO6Q9C0B7 1094 aa17.22■□□□□ 0.35
CCDC50-201ENST00000392455 ZNF287Q9HBT7 754 aa17.22■□□□□ 0.35
CCDC50-201ENST00000392455 WDHD1O75717 1129 aaPredicted RBP17.21■□□□□ 0.35
CCDC50-201ENST00000392455 WDR33Q9C0J8 1336 aaKnown RBP17.21■□□□□ 0.35
CCDC50-201ENST00000392455 ARHGAP29Q52LW3 1261 aa17.21■□□□□ 0.35
CCDC50-201ENST00000392455 CCDC30Q5VVM6 783 aa17.21■□□□□ 0.35
CCDC50-201ENST00000392455 ABTB2Q8N961 1025 aa17.21■□□□□ 0.35
CCDC50-201ENST00000392455 SMG6Q86US8 1419 aaKnown RBP17.21■□□□□ 0.35
CCDC50-201ENST00000392455 MYOM3Q5VTT5 1437 aa17.21■□□□□ 0.35
CCDC50-201ENST00000392455 SPA17Q15506 151 aa17.21■□□□□ 0.35
CCDC50-201ENST00000392455 WDR66Q8TBY9 1149 aa17.21■□□□□ 0.34
CCDC50-201ENST00000392455 KRT85P78386 507 aa17.2■□□□□ 0.34
CCDC50-201ENST00000392455 NLRP6P59044 892 aa17.2■□□□□ 0.34
CCDC50-201ENST00000392455 IFFO1Q0D2I5 559 aa17.2■□□□□ 0.34
CCDC50-201ENST00000392455 TNMDQ9H2S6 317 aa17.2■□□□□ 0.34
CCDC50-201ENST00000392455 PODXL2Q9NZ53 605 aa17.2■□□□□ 0.34
CCDC50-201ENST00000392455 NOL3O60936 208 aaKnown RBP17.2■□□□□ 0.34
CCDC50-201ENST00000392455 SOGA3Q5TF21 947 aa17.2■□□□□ 0.34
CCDC50-201ENST00000392455 CEP57L1Q8IYX8 460 aa17.2■□□□□ 0.34
CCDC50-201ENST00000392455 FSD2A1L4K1 749 aa17.19■□□□□ 0.34
CCDC50-201ENST00000392455 KIF20AO95235 890 aa17.19■□□□□ 0.34
CCDC50-201ENST00000392455 CCDC7Q96M83 1385 aa17.19■□□□□ 0.34
CCDC50-201ENST00000392455 TTC39AQ5SRH9 613 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms