RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ABCA3Q99758 1704 aa13.69□□□□□ -0.22
VPS53-202ENST00000389040 COL14A1Q05707 1796 aaKnown RBP13.69□□□□□ -0.22
VPS53-202ENST00000389040 AMPHP49418 695 aa13.68□□□□□ -0.22
VPS53-202ENST00000389040 MAP3K19Q56UN5 1328 aa13.68□□□□□ -0.22
VPS53-202ENST00000389040 EVA1CP58658 441 aa13.68□□□□□ -0.22
VPS53-202ENST00000389040 VPS72Q15906 364 aa13.68□□□□□ -0.22
VPS53-202ENST00000389040 SOX12O15370 315 aa13.67□□□□□ -0.22
VPS53-202ENST00000389040 RALBP1Q15311 655 aa13.67□□□□□ -0.22
VPS53-202ENST00000389040 CHRNA2Q15822 529 aa13.67□□□□□ -0.22
VPS53-202ENST00000389040 CC2D1BQ5T0F9 858 aaKnown RBP13.67□□□□□ -0.22
VPS53-202ENST00000389040 QTRT2Q9H974 415 aaKnown RBP13.67□□□□□ -0.22
VPS53-202ENST00000389040 FLT4P35916 1363 aa13.67□□□□□ -0.22
VPS53-202ENST00000389040 KIF20BQ96Q89 1820 aa13.66□□□□□ -0.22
VPS53-202ENST00000389040 POLKQ9UBT6 870 aa13.66□□□□□ -0.22
VPS53-202ENST00000389040 RGS17Q9UGC6 210 aaPredicted RBP13.66□□□□□ -0.22
VPS53-202ENST00000389040 MARF1Q9Y4F3 1742 aaKnown RBP13.66□□□□□ -0.22
VPS53-202ENST00000389040 HOXC9P31274 260 aa13.66□□□□□ -0.22
VPS53-202ENST00000389040 NWD2Q9ULI1 1742 aa13.65□□□□□ -0.22
VPS53-202ENST00000389040 FAM9BQ8IZU0 186 aa13.65□□□□□ -0.22
VPS53-202ENST00000389040 AXIN2Q9Y2T1 843 aa13.65□□□□□ -0.22
VPS53-202ENST00000389040 THRAP3Q9Y2W1 955 aaKnown RBP13.65□□□□□ -0.22
VPS53-202ENST00000389040 INSRP06213 1382 aa13.65□□□□□ -0.22
VPS53-202ENST00000389040 RBM6P78332 1123 aaKnown RBP13.64□□□□□ -0.23
VPS53-202ENST00000389040 RRS1Q15050 365 aaKnown RBP13.64□□□□□ -0.23
VPS53-202ENST00000389040 GJD4Q96KN9 370 aaPredicted RBP13.64□□□□□ -0.23
VPS53-202ENST00000389040 ATRNO75882 1429 aa13.64□□□□□ -0.23
VPS53-202ENST00000389040 SMG6Q86US8 1419 aaKnown RBP13.64□□□□□ -0.23
VPS53-202ENST00000389040 ERBB3P21860 1342 aa13.64□□□□□ -0.23
VPS53-202ENST00000389040 WDR17Q8IZU2 1322 aa13.64□□□□□ -0.23
VPS53-202ENST00000389040 CAMTA1Q9Y6Y1 1673 aa13.64□□□□□ -0.23
VPS53-202ENST00000389040 COL5A2P05997 1499 aaPredicted RBP13.64□□□□□ -0.23
VPS53-202ENST00000389040 NCBP3Q53F19 620 aaKnown RBP13.64□□□□□ -0.23
VPS53-202ENST00000389040 ZBTB7CA1YPR0 619 aa13.63□□□□□ -0.23
VPS53-202ENST00000389040 RXRBP28702 533 aa13.63□□□□□ -0.23
VPS53-202ENST00000389040 ANKRD26Q9UPS8 1709 aa13.63□□□□□ -0.23
VPS53-202ENST00000389040 PARD3Q8TEW0 1356 aa13.63□□□□□ -0.23
VPS53-202ENST00000389040 LMO7Q8WWI1 1683 aa13.63□□□□□ -0.23
VPS53-202ENST00000389040 SPATA31A5Q5VU36 1347 aa13.63□□□□□ -0.23
VPS53-202ENST00000389040 SPATA31A7Q8IWB4 1347 aa13.63□□□□□ -0.23
VPS53-202ENST00000389040 ONECUT3O60422 494 aaPredicted RBP13.62□□□□□ -0.23
VPS53-202ENST00000389040 TNNT2P45379 298 aaPredicted RBP13.62□□□□□ -0.23
VPS53-202ENST00000389040 CNGB1Q14028 1251 aaPredicted RBP13.62□□□□□ -0.23
VPS53-202ENST00000389040 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.62□□□□□ -0.23
VPS53-202ENST00000389040 CRB1P82279 1406 aa13.62□□□□□ -0.23
VPS53-202ENST00000389040 BARGINQ6ZT62 677 aa13.62□□□□□ -0.23
VPS53-202ENST00000389040 CDCA7Q9BWT1 371 aaPredicted RBP13.62□□□□□ -0.23
VPS53-202ENST00000389040 CARD10Q9BWT7 1032 aa13.62□□□□□ -0.23
VPS53-202ENST00000389040 STRN4Q9NRL3 753 aa13.62□□□□□ -0.23
VPS53-202ENST00000389040 EMILIN1Q9Y6C2 1016 aa13.62□□□□□ -0.23
VPS53-202ENST00000389040 NPM3O75607 178 aaKnown RBP13.61□□□□□ -0.23
VPS53-202ENST00000389040 FBLN1P23142 703 aa13.61□□□□□ -0.23
VPS53-202ENST00000389040 ANKRD24Q8TF21 1146 aa13.61□□□□□ -0.23
VPS53-202ENST00000389040 SPATA31A1Q5TZJ5 1347 aa13.61□□□□□ -0.23
VPS53-202ENST00000389040 PPM1GO15355 546 aaPredicted RBP13.6□□□□□ -0.23
VPS53-202ENST00000389040 CSB-PGBD3P0DP91 1061 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 MTHFSP49914 203 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 HSP90AB2PQ58FF8 381 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 TOM1L2Q6ZVM7 507 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 TCP11L2Q8N4U5 519 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 COL18A1P39060 1754 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 ZBED9Q6R2W3 1325 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 LARP1Q6PKG0 1096 aaKnown RBP13.6□□□□□ -0.23
VPS53-202ENST00000389040 POTEAQ6S8J7 498 aa13.6□□□□□ -0.23
VPS53-202ENST00000389040 CDK12Q9NYV4 1490 aaPredicted RBP13.6□□□□□ -0.23
VPS53-202ENST00000389040 MYBBP1AQ9BQG0 1328 aaKnown RBP13.59□□□□□ -0.23
VPS53-202ENST00000389040 PLCH1Q4KWH8 1693 aa13.59□□□□□ -0.23
VPS53-202ENST00000389040 NEFLP07196 543 aa13.59□□□□□ -0.23
VPS53-202ENST00000389040 PPP2R1AP30153 589 aa13.59□□□□□ -0.23
VPS53-202ENST00000389040 CFAP53Q96M91 514 aa13.59□□□□□ -0.23
VPS53-202ENST00000389040 CCDC9Q9Y3X0 531 aaKnown RBP13.59□□□□□ -0.23
VPS53-202ENST00000389040 FKBP8Q14318 412 aa13.58□□□□□ -0.23
VPS53-202ENST00000389040 PLEKHG2Q9H7P9 1386 aa13.58□□□□□ -0.24
VPS53-202ENST00000389040 NLRP2Q9NX02 1062 aa13.57□□□□□ -0.24
VPS53-202ENST00000389040 NRAPQ86VF7 1730 aa13.57□□□□□ -0.24
VPS53-202ENST00000389040 LTN1O94822 1766 aa13.56□□□□□ -0.24
VPS53-202ENST00000389040 PNISRQ8TF01 805 aaKnown RBP13.56□□□□□ -0.24
VPS53-202ENST00000389040 DIAPH1O60610 1272 aaKnown RBP13.55□□□□□ -0.24
VPS53-202ENST00000389040 EIF4A2Q14240 407 aaKnown RBP13.55□□□□□ -0.24
VPS53-202ENST00000389040 NUDCQ9Y266 331 aa13.54□□□□□ -0.24
VPS53-202ENST00000389040 IL13P35225 146 aa13.54□□□□□ -0.24
VPS53-202ENST00000389040 NBPF6Q5VWK0 638 aa13.54□□□□□ -0.24
VPS53-202ENST00000389040 LTV1Q96GA3 475 aaPredicted RBP13.54□□□□□ -0.24
VPS53-202ENST00000389040 NBPF4Q96M43 638 aa13.54□□□□□ -0.24
VPS53-202ENST00000389040 IL2RBP14784 551 aa13.53□□□□□ -0.24
VPS53-202ENST00000389040 FAM98CQ17RN3 349 aaKnown RBP13.52□□□□□ -0.24
VPS53-202ENST00000389040 USP35Q9P2H5 1018 aa13.52□□□□□ -0.24
VPS53-202ENST00000389040 IGSF1Q8N6C5 1336 aa13.52□□□□□ -0.24
VPS53-202ENST00000389040 NCAPD2Q15021 1401 aa13.52□□□□□ -0.24
VPS53-202ENST00000389040 FAM208AQ9UK61 1670 aaKnown RBP13.52□□□□□ -0.24
VPS53-202ENST00000389040 PEAK1Q9H792 1746 aa13.52□□□□□ -0.24
VPS53-202ENST00000389040 PELP1Q8IZL8 1130 aaKnown RBP13.52□□□□□ -0.25
VPS53-202ENST00000389040 EYA1Q99502 592 aa13.52□□□□□ -0.25
VPS53-202ENST00000389040 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.52□□□□□ -0.251e-6■■□□□ 14.2
VPS53-202ENST00000389040 MAP2P11137 1827 aaKnown RBP13.52□□□□□ -0.25
VPS53-202ENST00000389040 SEPT12Q8IYM1 358 aa13.51□□□□□ -0.25
VPS53-202ENST00000389040 RAPGEF4Q8WZA2 1011 aa13.51□□□□□ -0.25
VPS53-202ENST00000389040 GLI3P10071 1580 aa13.51□□□□□ -0.25
VPS53-202ENST00000389040 KDRP35968 1356 aa13.5□□□□□ -0.25
VPS53-202ENST00000389040 EXOC5O00471 708 aa13.5□□□□□ -0.25
VPS53-202ENST00000389040 DISP2A7MBM2 1401 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms