RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 CDCA7LQ96GN5 454 aa11.32□□□□□ -0.6
SNX1-202ENST00000380285 CALCOCO1Q9P1Z2 691 aa11.32□□□□□ -0.6
SNX1-202ENST00000380285 ARAP1Q96P48 1450 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 SPC24Q8NBT2 197 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 CGNQ9P2M7 1197 aaKnown RBP11.31□□□□□ -0.6
SNX1-202ENST00000380285 RBM10P98175 930 aaKnown RBP11.31□□□□□ -0.6
SNX1-202ENST00000380285 MAP3K11Q16584 847 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 CCAR1Q8IX12 1150 aaKnown RBP11.31□□□□□ -0.6
SNX1-202ENST00000380285 RPAP2Q8IXW5 612 aaPredicted RBP11.31□□□□□ -0.6
SNX1-202ENST00000380285 CAVIN2O95810 425 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 CCDC181Q5TID7 509 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 SYNJ2O15056 1496 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 DAPK1P53355 1430 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 ZSCAN12O43309 604 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 LARP1BQ659C4 914 aaKnown RBP11.31□□□□□ -0.6
SNX1-202ENST00000380285 ZSCAN25Q6NSZ9 544 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 NKTRP30414 1462 aaKnown RBP11.31□□□□□ -0.6
SNX1-202ENST00000380285 EXOSC9Q06265 439 aaKnown RBP11.31□□□□□ -0.6
SNX1-202ENST00000380285 CDK5RAP3Q96JB5 506 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 NEUROD6Q96NK8 337 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 RAPGEF4Q8WZA2 1011 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 MAP3K1Q13233 1512 aa11.31□□□□□ -0.6
SNX1-202ENST00000380285 EVA1CP58658 441 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 SPATA32Q96LK8 384 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 ABCC11Q96J66 1382 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 SYCP1Q15431 976 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 UBXN4Q92575 508 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 ME1P48163 572 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 CCDC183Q5T5S1 534 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 CTAGE5O15320 804 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 WASF1Q92558 559 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 C9orf84Q5VXU9 1444 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 CTNNA3Q9UI47 895 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 HMOX1P09601 288 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 PSME1Q06323 249 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 TMCO3Q6UWJ1 677 aa11.3□□□□□ -0.6
SNX1-202ENST00000380285 KIF18AQ8NI77 898 aa11.29□□□□□ -0.6
SNX1-202ENST00000380285 CCDC141Q6ZP82 1450 aa11.29□□□□□ -0.6
SNX1-202ENST00000380285 POTEB2H3BUK9 544 aa11.29□□□□□ -0.6
SNX1-202ENST00000380285 NOL7Q9UMY1 257 aaKnown RBP11.29□□□□□ -0.6
SNX1-202ENST00000380285 UPF3BQ9BZI7 483 aaKnown RBP11.29□□□□□ -0.6
SNX1-202ENST00000380285 BLOC1S2Q6QNY1 142 aa11.29□□□□□ -0.6
SNX1-202ENST00000380285 FILIP1Q7Z7B0 1213 aa11.29□□□□□ -0.6
SNX1-202ENST00000380285 CCDC148Q8NFR7 591 aa11.29□□□□□ -0.6
SNX1-202ENST00000380285 SCAND2PQ9GZW5 306 aaPredicted RBP11.28□□□□□ -0.6
SNX1-202ENST00000380285 CFTRP13569 1480 aa11.28□□□□□ -0.6
SNX1-202ENST00000380285 CCDC158Q5M9N0 1113 aa11.28□□□□□ -0.6
SNX1-202ENST00000380285 SH2B1Q9NRF2 756 aaPredicted RBP11.28□□□□□ -0.6
SNX1-202ENST00000380285 NACAP1Q9BZK3 213 aa11.28□□□□□ -0.6
SNX1-202ENST00000380285 CEP131Q9UPN4 1083 aa11.28□□□□□ -0.6
SNX1-202ENST00000380285 DYNC1I1O14576 645 aa11.28□□□□□ -0.6
SNX1-202ENST00000380285 ZNF692Q9BU19 519 aaPredicted RBP11.28□□□□□ -0.6
SNX1-202ENST00000380285 PLEKHO1Q53GL0 409 aaPredicted RBP11.27□□□□□ -0.6
SNX1-202ENST00000380285 NECTIN2Q92692 538 aa11.27□□□□□ -0.6
SNX1-202ENST00000380285 PRKAR2BP31323 418 aa11.27□□□□□ -0.6
SNX1-202ENST00000380285 PTPN14Q15678 1187 aa11.27□□□□□ -0.6
SNX1-202ENST00000380285 ALDH1L2Q3SY69 923 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 FOSBP53539 338 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 FMNL2Q96PY5 1086 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 SLFN5Q08AF3 891 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 PRIMPOLQ96LW4 560 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 PDRG1Q9NUG6 133 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 ATAD2Q6PL18 1390 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 SYNJ1O43426 1573 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.27□□□□□ -0.61
SNX1-202ENST00000380285 GOLGA6L9A6NEM1 432 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 RAB11FIP3O75154 756 aa11.27□□□□□ -0.61
SNX1-202ENST00000380285 GNL3LQ9NVN8 582 aaKnown RBP11.26□□□□□ -0.61
SNX1-202ENST00000380285 RPGRIP1LQ68CZ1 1315 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 ANKRD30BQ9BXX2 1392 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 GSDMDP57764 484 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 IMMTQ16891 758 aaKnown RBP11.26□□□□□ -0.61
SNX1-202ENST00000380285 TTLL5Q6EMB2 1281 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 GGNBP2Q9H3C7 697 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 SHTN1A0MZ66 631 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 SFPQP23246 707 aaKnown RBP eCLIP11.26□□□□□ -0.61
SNX1-202ENST00000380285 SEPT7Q16181 437 aaKnown RBP11.26□□□□□ -0.61
SNX1-202ENST00000380285 UVSSAQ2YD98 709 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 ANO10Q9NW15 660 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 NUTM2FA1L443 756 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 CCDC83Q8IWF9 413 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 DDX11Q96FC9 970 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 EPB41L2O43491 1005 aaKnown RBP11.26□□□□□ -0.61
SNX1-202ENST00000380285 TRHP20396 242 aaPredicted RBP11.26□□□□□ -0.61
SNX1-202ENST00000380285 BCAR3O75815 825 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 PRXQ9BXM0 1461 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 GPRASP1Q5JY77 1395 aa11.26□□□□□ -0.61
SNX1-202ENST00000380285 ZNF397Q8NF99 534 aaPredicted RBP11.25□□□□□ -0.61
SNX1-202ENST00000380285 FCHSD2O94868 740 aa11.25□□□□□ -0.61
SNX1-202ENST00000380285 RBM33Q96EV2 1170 aaKnown RBP11.25□□□□□ -0.61
SNX1-202ENST00000380285 CRACR2AQ9BSW2 395 aa11.25□□□□□ -0.61
SNX1-202ENST00000380285 GRIN2BQ13224 1484 aa11.25□□□□□ -0.61
SNX1-202ENST00000380285 CCDC57Q2TAC2 916 aa11.25□□□□□ -0.61
SNX1-202ENST00000380285 EZRP15311 586 aaKnown RBP11.25□□□□□ -0.61
SNX1-202ENST00000380285 MICALCLQ6ZW33 695 aa11.25□□□□□ -0.61
SNX1-202ENST00000380285 ARHGAP29Q52LW3 1261 aa11.24□□□□□ -0.61
SNX1-202ENST00000380285 AQRO60306 1485 aaKnown RBP eCLIP11.24□□□□□ -0.617e-7■■■■■ 31.9
SNX1-202ENST00000380285 ZFYVE27Q5T4F4 411 aa11.24□□□□□ -0.61
SNX1-202ENST00000380285 KIF6Q6ZMV9 814 aa11.24□□□□□ -0.61
SNX1-202ENST00000380285 CCDC69A6NI79 296 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 339.1 ms