RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 LRRCC1Q9C099 1032 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 EIF3JO75822 258 aaKnown RBP5.87□□□□□ -1.47
PCDH9-201ENST00000377861 LIMCH1Q9UPQ0 1083 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 CCDC178Q5BJE1 867 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 SMC3Q9UQE7 1217 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 DDX19AQ9NUU7 478 aaKnown RBP5.87□□□□□ -1.47
PCDH9-201ENST00000377861 TEX14Q8IWB6 1497 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 LRRC27Q9C0I9 530 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 ERLIN1O75477 346 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 PLEKHO1Q53GL0 409 aaPredicted RBP5.87□□□□□ -1.47
PCDH9-201ENST00000377861 HIRIP3Q9BW71 556 aaPredicted RBP5.87□□□□□ -1.47
PCDH9-201ENST00000377861 CNGB1Q14028 1251 aaPredicted RBP5.87□□□□□ -1.47
PCDH9-201ENST00000377861 ZBTB40Q9NUA8 1239 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 HYPKQ9NX55 129 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 ATP10AO60312 1499 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 ZFYP08048 801 aaPredicted RBP5.86□□□□□ -1.47
PCDH9-201ENST00000377861 ZSCAN12O43309 604 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 FILIP1LQ4L180 1135 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 EHBP1Q8NDI1 1231 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 AKAP2Q9Y2D5 859 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 TAF7Q15545 349 aaPredicted RBP5.86□□□□□ -1.47
PCDH9-201ENST00000377861 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.86□□□□□ -1.47
PCDH9-201ENST00000377861 FGFR1OPO95684 399 aaKnown RBP5.86□□□□□ -1.47
PCDH9-201ENST00000377861 DCTN1Q14203 1278 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 SF3A1Q15459 793 aaKnown RBP5.86□□□□□ -1.47
PCDH9-201ENST00000377861 CROCCP2Q86T23 111 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 GOLIM4O00461 696 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 C1orf141Q5JVX7 400 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 IFIT2P09913 472 aaKnown RBP5.86□□□□□ -1.47
PCDH9-201ENST00000377861 UBE2HP62256 183 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 PODNQ7Z5L7 613 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 SALL2Q9Y467 1007 aaPredicted RBP5.86□□□□□ -1.47
PCDH9-201ENST00000377861 SDF4Q9BRK5 362 aa5.86□□□□□ -1.47
PCDH9-201ENST00000377861 SYCP1Q15431 976 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 SHANK2Q9UPX8 1470 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 UBTFL1P0CB47 393 aaPredicted RBP5.85□□□□□ -1.47
PCDH9-201ENST00000377861 TEFQ10587 303 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 TIAM1Q13009 1591 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 KIF18AQ8NI77 898 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 C9orf84Q5VXU9 1444 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 SMC2O95347 1197 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 PSME1Q06323 249 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 NBPF8Q3BBV2 869 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 NFE2L2Q16236 605 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 ERLIN2O94905 339 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 TMPOP42166 694 aaKnown RBP5.85□□□□□ -1.47
PCDH9-201ENST00000377861 LLPHQ9BRT6 129 aaKnown RBP5.85□□□□□ -1.47
PCDH9-201ENST00000377861 DCTPP1Q9H773 170 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 C9orf78Q9NZ63 289 aaPredicted RBP5.85□□□□□ -1.47
PCDH9-201ENST00000377861 TAOK2Q9UL54 1235 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 NOL7Q9UMY1 257 aaKnown RBP5.85□□□□□ -1.47
PCDH9-201ENST00000377861 CTAGE1Q96RT6 745 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 ERBINQ96RT1 1412 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 PDE6BP35913 854 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 CALR3Q96L12 384 aaKnown RBP5.85□□□□□ -1.47
PCDH9-201ENST00000377861 RALGAPBQ86X10 1494 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 ABCC5O15440 1437 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.85□□□□□ -1.47
PCDH9-201ENST00000377861 RAD50Q92878 1312 aa5.85□□□□□ -1.47
PCDH9-201ENST00000377861 ALDH1L1O75891 902 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 SLC3A2P08195 630 aaKnown RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 BRMS1Q9HCU9 246 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 LAMC3Q9Y6N6 1575 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 BMS1Q14692 1282 aaKnown RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 CRBNQ96SW2 442 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 TMX4Q9H1E5 349 aaPredicted RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 TSPY26PQ9H489 355 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 OSBPL3Q9H4L5 887 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 AKAP17AQ02040 695 aaKnown RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 ZNF445P59923 1031 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 AMPHP49418 695 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 AMOTL1Q8IY63 956 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 ANKRD24Q8TF21 1146 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 PES1O00541 588 aaKnown RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 ANO10Q9NW15 660 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 WDR97A6NE52 1622 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 GGT6Q6P531 493 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 SMARCE1Q969G3 411 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 CALCOCO1Q9P1Z2 691 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 KINO60870 393 aaKnown RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 STK24Q9Y6E0 443 aa5.84□□□□□ -1.47
PCDH9-201ENST00000377861 ZNF397Q8NF99 534 aaPredicted RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 UTP14AQ9BVJ6 771 aaKnown RBP5.84□□□□□ -1.47
PCDH9-201ENST00000377861 CGNQ9P2M7 1197 aaKnown RBP5.84□□□□□ -1.48
PCDH9-201ENST00000377861 TTC21AQ8NDW8 1320 aa5.84□□□□□ -1.48
PCDH9-201ENST00000377861 MTA3Q9BTC8 594 aa5.84□□□□□ -1.48
PCDH9-201ENST00000377861 RPGRIP1Q96KN7 1286 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 MAP9Q49MG5 647 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 NACAP1Q9BZK3 213 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 CPLX1O14810 134 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 TESK2Q96S53 571 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 RAD54L2Q9Y4B4 1467 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 NEUROD2Q15784 382 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 IMPACTQ9P2X3 320 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 EPRSP07814 1512 aaKnown RBP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 ANKRD36BQ8N2N9 1353 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 COG6Q9Y2V7 657 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 OFD1O75665 1012 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 OLFM4Q6UX06 510 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 KCNG1Q9UIX4 513 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms