RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 ZHX3Q9H4I2 956 aa26.3■■□□□ 1.8
TM9SF3-201ENST00000371142 MPNDQ8N594 471 aa26.3■■□□□ 1.8
TM9SF3-201ENST00000371142 FKBP4Q02790 459 aaKnown RBP eCLIP26.29■■□□□ 1.8
TM9SF3-201ENST00000371142 RDXP35241 583 aaKnown RBP26.29■■□□□ 1.8
TM9SF3-201ENST00000371142 NACAP1Q9BZK3 213 aa26.29■■□□□ 1.8
TM9SF3-201ENST00000371142 TNMDQ9H2S6 317 aa26.29■■□□□ 1.8
TM9SF3-201ENST00000371142 CFTRP13569 1480 aa26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 CCP110O43303 1012 aa26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 AACSQ86V21 672 aa26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 TRIM22Q8IYM9 498 aa26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 AEBP1Q8IUX7 1158 aa26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 JMYQ8N9B5 988 aa26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 NUTM2BA6NNL0 878 aaPredicted RBP26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 NUTM2EB1AL46 878 aaPredicted RBP26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 ANKRD1Q15327 319 aa26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 NUTM2AQ8IVF1 878 aaPredicted RBP26.28■■□□□ 1.8
TM9SF3-201ENST00000371142 BRPF3Q9ULD4 1205 aa26.27■■□□□ 1.8
TM9SF3-201ENST00000371142 K7ELQ4 463 aaPredicted RBP26.27■■□□□ 1.8
TM9SF3-201ENST00000371142 WWC2Q6AWC2 1192 aa26.27■■□□□ 1.8
TM9SF3-201ENST00000371142 CCDC57Q2TAC2 916 aa26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 H0YHG0 523 aa26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 PIP4K2AP48426 406 aaPredicted RBP26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 PNISRQ8TF01 805 aaKnown RBP26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 MAP7D2Q96T17 732 aa26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 DCTN1Q14203 1278 aa26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 ATF7IPQ6VMQ6 1270 aa26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 RRS1Q15050 365 aaKnown RBP26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 SPG7Q9UQ90 795 aa26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 CCDC192P0DO97 292 aa26.26■■□□□ 1.79
TM9SF3-201ENST00000371142 MVPQ14764 893 aaKnown RBP26.25■■□□□ 1.79
TM9SF3-201ENST00000371142 MPHOSPH8Q99549 860 aa26.25■■□□□ 1.79
TM9SF3-201ENST00000371142 CHD1LQ86WJ1 897 aa26.25■■□□□ 1.79
TM9SF3-201ENST00000371142 ZNHIT6Q9NWK9 470 aaKnown RBP26.25■■□□□ 1.79
TM9SF3-201ENST00000371142 LARP1BQ659C4 914 aaKnown RBP26.25■■□□□ 1.79
TM9SF3-201ENST00000371142 TANGO6Q9C0B7 1094 aa26.24■■□□□ 1.79
TM9SF3-201ENST00000371142 ZNF692Q9BU19 519 aaPredicted RBP26.24■■□□□ 1.79
TM9SF3-201ENST00000371142 SPINK5Q9NQ38 1064 aaPredicted RBP26.24■■□□□ 1.79
TM9SF3-201ENST00000371142 WDR33Q9C0J8 1336 aaKnown RBP26.24■■□□□ 1.79
TM9SF3-201ENST00000371142 PAF1Q8N7H5 531 aa26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 SYNJ2O15056 1496 aa26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 NBPF8Q3BBV2 869 aa26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 SRGAP3O43295 1099 aa26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 AXDND1Q5T1B0 1012 aaPredicted RBP26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 CWC27Q6UX04 472 aaKnown RBP26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 WDR63Q8IWG1 891 aa26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 RBM5P52756 815 aaKnown RBP eCLIP26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 PPFIBP1Q86W92 1011 aa26.23■■□□□ 1.79
TM9SF3-201ENST00000371142 BTBD11A6QL63 1104 aa26.22■■□□□ 1.79
TM9SF3-201ENST00000371142 DEF6Q9H4E7 631 aa26.22■■□□□ 1.79
TM9SF3-201ENST00000371142 IL1RAPL2Q9NP60 686 aa26.22■■□□□ 1.79
TM9SF3-201ENST00000371142 RBM10P98175 930 aaKnown RBP26.22■■□□□ 1.79
TM9SF3-201ENST00000371142 RTEL1-TNFRSF6BF6WH68 1400 aa26.21■■□□□ 1.79
TM9SF3-201ENST00000371142 KRT85P78386 507 aa26.21■■□□□ 1.79
TM9SF3-201ENST00000371142 PDCL3Q9H2J4 239 aa26.21■■□□□ 1.79
TM9SF3-201ENST00000371142 PDRG1Q9NUG6 133 aa26.21■■□□□ 1.79
TM9SF3-201ENST00000371142 SOGA3Q5TF21 947 aa26.21■■□□□ 1.79
TM9SF3-201ENST00000371142 C9orf84Q5VXU9 1444 aa26.2■■□□□ 1.79
TM9SF3-201ENST00000371142 JAKMIP1Q96N16 626 aaKnown RBP26.2■■□□□ 1.79
TM9SF3-201ENST00000371142 HFM1A2PYH4 1435 aa26.2■■□□□ 1.78
TM9SF3-201ENST00000371142 DACH1Q9UI36 760 aa26.2■■□□□ 1.78
TM9SF3-201ENST00000371142 STIM1Q13586 685 aa26.2■■□□□ 1.78
TM9SF3-201ENST00000371142 FAM177A1Q8N128 213 aaPredicted RBP26.2■■□□□ 1.78
TM9SF3-201ENST00000371142 ZSCAN25Q6NSZ9 544 aa26.2■■□□□ 1.78
TM9SF3-201ENST00000371142 BLOC1S2Q6QNY1 142 aa26.2■■□□□ 1.78
TM9SF3-201ENST00000371142 CWC15Q9P013 229 aaKnown RBP26.2■■□□□ 1.78
TM9SF3-201ENST00000371142 ERBINQ96RT1 1412 aa26.19■■□□□ 1.78
TM9SF3-201ENST00000371142 KIAA1107Q9UPP5 1409 aa26.19■■□□□ 1.78
TM9SF3-201ENST00000371142 CCDC85AQ96PX6 553 aaPredicted RBP26.18■■□□□ 1.78
TM9SF3-201ENST00000371142 PRG4Q92954 1404 aaPredicted RBP26.18■■□□□ 1.78
TM9SF3-201ENST00000371142 TDO2P48775 406 aa26.18■■□□□ 1.78
TM9SF3-201ENST00000371142 PIBF1Q8WXW3 757 aa26.18■■□□□ 1.78
TM9SF3-201ENST00000371142 THEMISQ8N1K5 641 aaPredicted RBP26.17■■□□□ 1.78
TM9SF3-201ENST00000371142 CCDC191Q8NCU4 936 aa26.17■■□□□ 1.78
TM9SF3-201ENST00000371142 MTERF4Q7Z6M4 381 aaKnown RBP26.17■■□□□ 1.78
TM9SF3-201ENST00000371142 XPCQ01831 940 aaPredicted RBP26.17■■□□□ 1.78
TM9SF3-201ENST00000371142 SPATA32Q96LK8 384 aa26.17■■□□□ 1.78
TM9SF3-201ENST00000371142 BACH2Q9BYV9 841 aa26.16■■□□□ 1.78
TM9SF3-201ENST00000371142 NOL7Q9UMY1 257 aaKnown RBP26.16■■□□□ 1.78
TM9SF3-201ENST00000371142 SLC26A8Q96RN1 970 aa26.16■■□□□ 1.78
TM9SF3-201ENST00000371142 CT47B1P0C2W7 299 aaPredicted RBP26.16■■□□□ 1.78
TM9SF3-201ENST00000371142 NEFHP12036 1026 aa26.16■■□□□ 1.78
TM9SF3-201ENST00000371142 CCDC181Q5TID7 509 aa26.15■■□□□ 1.78
TM9SF3-201ENST00000371142 TSPYL1Q9H0U9 437 aa26.15■■□□□ 1.78
TM9SF3-201ENST00000371142 SSBP05455 408 aaKnown RBP eCLIP26.15■■□□□ 1.78
TM9SF3-201ENST00000371142 RAI14Q9P0K7 980 aa26.15■■□□□ 1.78
TM9SF3-201ENST00000371142 BICDL1Q6ZP65 573 aa26.14■■□□□ 1.78
TM9SF3-201ENST00000371142 NUTM1Q86Y26 1132 aa26.14■■□□□ 1.78
TM9SF3-201ENST00000371142 UBAC1Q9BSL1 405 aa26.14■■□□□ 1.77
TM9SF3-201ENST00000371142 ERLIN2O94905 339 aa26.13■■□□□ 1.77
TM9SF3-201ENST00000371142 ZSCAN29Q8IWY8 852 aaPredicted RBP26.13■■□□□ 1.77
TM9SF3-201ENST00000371142 MIS18AQ9NYP9 233 aa26.13■■□□□ 1.77
TM9SF3-201ENST00000371142 CEP126Q9P2H0 1117 aa26.13■■□□□ 1.77
TM9SF3-201ENST00000371142 GRIN2BQ13224 1484 aa26.12■■□□□ 1.77
TM9SF3-201ENST00000371142 GRPEL1Q9HAV7 217 aa26.12■■□□□ 1.77
TM9SF3-201ENST00000371142 HMGN5P82970 282 aaKnown RBP26.12■■□□□ 1.77
TM9SF3-201ENST00000371142 LEKR1Q6ZMV7 388 aa26.12■■□□□ 1.77
TM9SF3-201ENST00000371142 CDKL5O76039 1030 aa26.12■■□□□ 1.77
TM9SF3-201ENST00000371142 SEPT11Q9NVA2 429 aaKnown RBP26.12■■□□□ 1.77
TM9SF3-201ENST00000371142 PRDM11Q9NQV5 511 aa26.11■■□□□ 1.77
TM9SF3-201ENST00000371142 LUC7LQ9NQ29 371 aaKnown RBP26.1■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms