RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 DNAJC2Q99543 621 aaKnown RBP18.93■□□□□ 0.62
COL17A1-202ENST00000369733 SYNJ2O15056 1496 aa18.93■□□□□ 0.62
COL17A1-202ENST00000369733 PDRG1Q9NUG6 133 aa18.93■□□□□ 0.62
COL17A1-202ENST00000369733 XRCC6P12956 609 aaKnown RBP eCLIP18.92■□□□□ 0.62
COL17A1-202ENST00000369733 NAP1L1P55209 391 aaKnown RBP18.92■□□□□ 0.62
COL17A1-202ENST00000369733 ZSCAN31Q96LW9 406 aaPredicted RBP18.92■□□□□ 0.62
COL17A1-202ENST00000369733 SERPINC1P01008 464 aa18.92■□□□□ 0.62
COL17A1-202ENST00000369733 POLA1P09884 1462 aaPredicted RBP18.91■□□□□ 0.62
COL17A1-202ENST00000369733 KDM4AO75164 1064 aa18.91■□□□□ 0.62
COL17A1-202ENST00000369733 FCHSD2O94868 740 aa18.91■□□□□ 0.62
COL17A1-202ENST00000369733 ME1P48163 572 aa18.91■□□□□ 0.62
COL17A1-202ENST00000369733 SULT6B1Q6IMI4 303 aa18.91■□□□□ 0.62
COL17A1-202ENST00000369733 GTF2E1P29083 439 aaPredicted RBP18.9■□□□□ 0.62
COL17A1-202ENST00000369733 MAP3K11Q16584 847 aa18.9■□□□□ 0.62
COL17A1-202ENST00000369733 JAKMIP1Q96N16 626 aaKnown RBP18.9■□□□□ 0.62
COL17A1-202ENST00000369733 C8orf34Q49A92 452 aa18.9■□□□□ 0.62
COL17A1-202ENST00000369733 CCDC183Q5T5S1 534 aa18.9■□□□□ 0.62
COL17A1-202ENST00000369733 ABCC5O15440 1437 aa18.9■□□□□ 0.62
COL17A1-202ENST00000369733 CABP1Q9NZU7 370 aa18.9■□□□□ 0.62
COL17A1-202ENST00000369733 H0YHG0 523 aa18.89■□□□□ 0.62
COL17A1-202ENST00000369733 FILIP1Q7Z7B0 1213 aa18.89■□□□□ 0.61
COL17A1-202ENST00000369733 GPRASP1Q5JY77 1395 aa18.89■□□□□ 0.61
COL17A1-202ENST00000369733 ALDH1L2Q3SY69 923 aa18.89■□□□□ 0.61
COL17A1-202ENST00000369733 CDR1P51861 262 aa18.89■□□□□ 0.61
COL17A1-202ENST00000369733 ZMYND15Q9H091 742 aa18.89■□□□□ 0.61
COL17A1-202ENST00000369733 DHX16O60231 1041 aaKnown RBP18.88■□□□□ 0.61
COL17A1-202ENST00000369733 CWC27Q6UX04 472 aaKnown RBP18.88■□□□□ 0.61
COL17A1-202ENST00000369733 BAG4O95429 457 aaKnown RBP18.88■□□□□ 0.61
COL17A1-202ENST00000369733 ERICH4A6NGS2 130 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 SMARCE1Q969G3 411 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 CDK19Q9BWU1 502 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 MCM5P33992 734 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 NFE2L2Q16236 605 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 FILIP1LQ4L180 1135 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 TAF3Q5VWG9 929 aa18.88■□□□□ 0.61
COL17A1-202ENST00000369733 HDGFL1Q5TGJ6 251 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 SMARCA5O60264 1052 aaPredicted RBP18.87■□□□□ 0.61
COL17A1-202ENST00000369733 BLOC1S2Q6QNY1 142 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 CEP57L1Q8IYX8 460 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 PANK2Q9BZ23 570 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 IL1RAPL2Q9NP60 686 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 CAMK4Q16566 473 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 KLHL40Q2TBA0 621 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 TRIM27P14373 513 aa18.87■□□□□ 0.61
COL17A1-202ENST00000369733 UPF3BQ9BZI7 483 aaKnown RBP18.86■□□□□ 0.61
COL17A1-202ENST00000369733 USP25Q9UHP3 1055 aa18.86■□□□□ 0.61
COL17A1-202ENST00000369733 NUTM2GQ5VZR2 741 aa18.86■□□□□ 0.61
COL17A1-202ENST00000369733 FAM177A1Q8N128 213 aaPredicted RBP18.86■□□□□ 0.61
COL17A1-202ENST00000369733 CFAP45Q9UL16 551 aa18.86■□□□□ 0.61
COL17A1-202ENST00000369733 CASTP20810 708 aaKnown RBP18.85■□□□□ 0.61
COL17A1-202ENST00000369733 NCBP3Q53F19 620 aaKnown RBP18.85■□□□□ 0.61
COL17A1-202ENST00000369733 PSME1Q06323 249 aa18.85■□□□□ 0.61
COL17A1-202ENST00000369733 TBC1D9Q6ZT07 1266 aa18.85■□□□□ 0.61
COL17A1-202ENST00000369733 EXOC6BQ9Y2D4 811 aa18.85■□□□□ 0.61
COL17A1-202ENST00000369733 BRPF1P55201 1214 aaPredicted RBP18.85■□□□□ 0.61
COL17A1-202ENST00000369733 BRMS1Q9HCU9 246 aa18.85■□□□□ 0.61
COL17A1-202ENST00000369733 TOPBP1Q92547 1522 aa18.85■□□□□ 0.61
COL17A1-202ENST00000369733 NLRP6P59044 892 aa18.85■□□□□ 0.61
COL17A1-202ENST00000369733 JMYQ8N9B5 988 aa18.85■□□□□ 0.61
COL17A1-202ENST00000369733 BMP2KLQ5H9B9 411 aa18.84■□□□□ 0.61
COL17A1-202ENST00000369733 XBP1P17861 261 aa18.84■□□□□ 0.61
COL17A1-202ENST00000369733 ATP2B1P20020 1258 aa18.84■□□□□ 0.61
COL17A1-202ENST00000369733 CAMSAP2Q08AD1 1489 aa18.84■□□□□ 0.61
COL17A1-202ENST00000369733 DYNC1I1O14576 645 aa18.84■□□□□ 0.61
COL17A1-202ENST00000369733 CBFA2T2O43439 604 aa18.84■□□□□ 0.61
COL17A1-202ENST00000369733 AXDND1Q5T1B0 1012 aaPredicted RBP18.84■□□□□ 0.61
COL17A1-202ENST00000369733 AMOTL1Q8IY63 956 aa18.84■□□□□ 0.61
COL17A1-202ENST00000369733 THUMPD2Q9BTF0 503 aaKnown RBP18.84■□□□□ 0.61
COL17A1-202ENST00000369733 SRGAP3O43295 1099 aa18.83■□□□□ 0.61
COL17A1-202ENST00000369733 PDIA4P13667 645 aaKnown RBP18.83■□□□□ 0.61
COL17A1-202ENST00000369733 ABCC11Q96J66 1382 aa18.83■□□□□ 0.61
COL17A1-202ENST00000369733 PLEKHH1Q9ULM0 1364 aa18.83■□□□□ 0.61
COL17A1-202ENST00000369733 MX1P20591 662 aa18.83■□□□□ 0.6
COL17A1-202ENST00000369733 ZSCAN23Q3MJ62 389 aa18.83■□□□□ 0.6
COL17A1-202ENST00000369733 RBM27Q9P2N5 1060 aaKnown RBP18.83■□□□□ 0.6
COL17A1-202ENST00000369733 CCDC83Q8IWF9 413 aa18.83■□□□□ 0.6
COL17A1-202ENST00000369733 PTPN14Q15678 1187 aa18.82■□□□□ 0.6
COL17A1-202ENST00000369733 ERLIN1O75477 346 aa18.82■□□□□ 0.6
COL17A1-202ENST00000369733 NUTM1Q86Y26 1132 aa18.82■□□□□ 0.6
COL17A1-202ENST00000369733 FERMT3Q86UX7 667 aa18.82■□□□□ 0.6
COL17A1-202ENST00000369733 DHX29Q7Z478 1369 aaKnown RBP18.81■□□□□ 0.6
COL17A1-202ENST00000369733 DISP3Q9P2K9 1392 aa18.81■□□□□ 0.6
COL17A1-202ENST00000369733 TRHP20396 242 aaPredicted RBP18.81■□□□□ 0.6
COL17A1-202ENST00000369733 RDXP35241 583 aaKnown RBP18.81■□□□□ 0.6
COL17A1-202ENST00000369733 PPFIBP1Q86W92 1011 aa18.81■□□□□ 0.6
COL17A1-202ENST00000369733 EIF3JO75822 258 aaKnown RBP18.81■□□□□ 0.6
COL17A1-202ENST00000369733 SKIDA1Q1XH10 827 aa18.81■□□□□ 0.6
COL17A1-202ENST00000369733 AACSQ86V21 672 aa18.81■□□□□ 0.6
COL17A1-202ENST00000369733 SIL1Q9H173 461 aa18.81■□□□□ 0.6
COL17A1-202ENST00000369733 TMX4Q9H1E5 349 aaPredicted RBP18.81■□□□□ 0.6
COL17A1-202ENST00000369733 RAPGEF4Q8WZA2 1011 aa18.81■□□□□ 0.6
COL17A1-202ENST00000369733 UBXN4Q92575 508 aa18.81■□□□□ 0.6
COL17A1-202ENST00000369733 ATAD2Q6PL18 1390 aa18.8■□□□□ 0.6
COL17A1-202ENST00000369733 PPP4R3BQ5MIZ7 849 aa18.8■□□□□ 0.6
COL17A1-202ENST00000369733 KIF2AO00139 706 aaPredicted RBP18.79■□□□□ 0.6
COL17A1-202ENST00000369733 VPS37DQ86XT2 251 aa18.79■□□□□ 0.6
COL17A1-202ENST00000369733 CGNQ9P2M7 1197 aaKnown RBP18.79■□□□□ 0.6
COL17A1-202ENST00000369733 DACH1Q9UI36 760 aa18.79■□□□□ 0.6
COL17A1-202ENST00000369733 ADCY5O95622 1261 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms