RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 POLKQ9UBT6 870 aa18.07■□□□□ 0.48
USF1-202ENST00000368020 SSH2Q76I76 1423 aa18.06■□□□□ 0.48
USF1-202ENST00000368020 CALD1Q05682 793 aaKnown RBP18.06■□□□□ 0.48
USF1-202ENST00000368020 ERICH6Q7L0X2 663 aa18.04■□□□□ 0.48
USF1-202ENST00000368020 TTC21AQ8NDW8 1320 aa18.04■□□□□ 0.48
USF1-202ENST00000368020 TTC21BQ7Z4L5 1316 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 FOXO3O43524 673 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 RIPK4P57078 832 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 PSME1Q06323 249 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 BRINP3Q76B58 766 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 ZNF428Q96B54 188 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 RSPH6AQ9H0K4 717 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 TRIM35Q9UPQ4 493 aa18.02■□□□□ 0.48
USF1-202ENST00000368020 NPHP3Q7Z494 1330 aa18.02■□□□□ 0.47
USF1-202ENST00000368020 NME9Q86XW9 330 aa18.01■□□□□ 0.47
USF1-202ENST00000368020 CLUAP1Q96AJ1 413 aa18.01■□□□□ 0.47
USF1-202ENST00000368020 PDE4AP27815 886 aa18.01■□□□□ 0.47
USF1-202ENST00000368020 BACH2Q9BYV9 841 aa18.01■□□□□ 0.47
USF1-202ENST00000368020 TOM1O60784 492 aa18■□□□□ 0.47
USF1-202ENST00000368020 LMOD3Q0VAK6 560 aa18■□□□□ 0.47
USF1-202ENST00000368020 PPM1GO15355 546 aaPredicted RBP17.99■□□□□ 0.47
USF1-202ENST00000368020 CERKQ8TCT0 537 aa17.99■□□□□ 0.47
USF1-202ENST00000368020 PRKAR2BP31323 418 aa17.98■□□□□ 0.47
USF1-202ENST00000368020 FRAT1Q92837 279 aaPredicted RBP17.98■□□□□ 0.47
USF1-202ENST00000368020 OVOS2A0A0J9YW53 1432 aa17.98■□□□□ 0.47
USF1-202ENST00000368020 OVOS2Q6IE36 1432 aa17.98■□□□□ 0.47
USF1-202ENST00000368020 IL13P35225 146 aa17.98■□□□□ 0.47
USF1-202ENST00000368020 NFE2L2Q16236 605 aa17.98■□□□□ 0.47
USF1-202ENST00000368020 ZKSCAN2Q63HK3 967 aa17.98■□□□□ 0.47
USF1-202ENST00000368020 KRT28Q7Z3Y7 464 aa17.98■□□□□ 0.47
USF1-202ENST00000368020 ILDR1Q86SU0 546 aaPredicted RBP17.98■□□□□ 0.47
USF1-202ENST00000368020 USP31Q70CQ4 1352 aa17.97■□□□□ 0.47
USF1-202ENST00000368020 MSH5O43196 834 aa17.97■□□□□ 0.47
USF1-202ENST00000368020 KIF16BQ96L93 1317 aa17.96■□□□□ 0.47
USF1-202ENST00000368020 SBNO1A3KN83 1393 aa17.96■□□□□ 0.47
USF1-202ENST00000368020 IPO9Q96P70 1041 aaKnown RBP17.95■□□□□ 0.46
USF1-202ENST00000368020 EMILIN1Q9Y6C2 1016 aa17.95■□□□□ 0.46
USF1-202ENST00000368020 TRPM3Q9HCF6 1732 aaPredicted RBP17.95■□□□□ 0.46
USF1-202ENST00000368020 ALDH1L2Q3SY69 923 aa17.95■□□□□ 0.46
USF1-202ENST00000368020 SOS2Q07890 1332 aaPredicted RBP17.94■□□□□ 0.46
USF1-202ENST00000368020 VIRMAQ69YN4 1812 aaKnown RBP17.94■□□□□ 0.46
USF1-202ENST00000368020 DLG5Q8TDM6 1919 aa17.94■□□□□ 0.46
USF1-202ENST00000368020 PXDNQ92626 1479 aa17.94■□□□□ 0.46
USF1-202ENST00000368020 EXOSC9Q06265 439 aaKnown RBP17.94■□□□□ 0.46
USF1-202ENST00000368020 PANK1Q8TE04 598 aa17.94■□□□□ 0.46
USF1-202ENST00000368020 COG6Q9Y2V7 657 aa17.94■□□□□ 0.46
USF1-202ENST00000368020 IPO8O15397 1037 aaKnown RBP17.93■□□□□ 0.46
USF1-202ENST00000368020 PAK3O75914 559 aaPredicted RBP17.93■□□□□ 0.46
USF1-202ENST00000368020 FTSJ3Q8IY81 847 aaKnown RBP17.93■□□□□ 0.46
USF1-202ENST00000368020 ABTB2Q8N961 1025 aa17.93■□□□□ 0.46
USF1-202ENST00000368020 SMC4Q9NTJ3 1288 aa17.93■□□□□ 0.46
USF1-202ENST00000368020 USP54Q70EL1 1684 aa17.93■□□□□ 0.46
USF1-202ENST00000368020 NHSL1Q5SYE7 1610 aa17.93■□□□□ 0.46
USF1-202ENST00000368020 PIK3C2AO00443 1686 aa17.93■□□□□ 0.46
USF1-202ENST00000368020 DZIP1LQ8IYY4 767 aaKnown RBP17.92■□□□□ 0.46
USF1-202ENST00000368020 NOP58Q9Y2X3 529 aaKnown RBP17.92■□□□□ 0.46
USF1-202ENST00000368020 ROBO1Q9Y6N7 1651 aa17.92■□□□□ 0.46
USF1-202ENST00000368020 BRPF1P55201 1214 aaPredicted RBP17.92■□□□□ 0.46
USF1-202ENST00000368020 GNAI1P63096 354 aa17.92■□□□□ 0.46
USF1-202ENST00000368020 MVPQ14764 893 aaKnown RBP17.92■□□□□ 0.46
USF1-202ENST00000368020 TSR2Q969E8 191 aaKnown RBP17.92■□□□□ 0.46
USF1-202ENST00000368020 IFT57Q9NWB7 429 aa17.92■□□□□ 0.46
USF1-202ENST00000368020 XPCQ01831 940 aaPredicted RBP17.91■□□□□ 0.46
USF1-202ENST00000368020 RGPD1P0DJD0 1748 aa17.9■□□□□ 0.46
USF1-202ENST00000368020 UBAP1LF5GYI3 381 aa17.9■□□□□ 0.46
USF1-202ENST00000368020 NLRP6P59044 892 aa17.9■□□□□ 0.46
USF1-202ENST00000368020 FAM161AQ3B820 660 aa17.9■□□□□ 0.46
USF1-202ENST00000368020 ALS2Q96Q42 1657 aa17.9■□□□□ 0.46
USF1-202ENST00000368020 AHDC1Q5TGY3 1603 aaPredicted RBP17.9■□□□□ 0.46
USF1-202ENST00000368020 SPATA31A3Q5VYP0 1347 aa17.89■□□□□ 0.46
USF1-202ENST00000368020 DDX17Q92841 729 aaKnown RBP17.89■□□□□ 0.46
USF1-202ENST00000368020 CHMP4BQ9H444 224 aaKnown RBP17.89■□□□□ 0.46
USF1-202ENST00000368020 ZRANB1Q9UGI0 708 aa17.89■□□□□ 0.46
USF1-202ENST00000368020 DDX19BQ9UMR2 479 aa17.89■□□□□ 0.46
USF1-202ENST00000368020 TNS3Q68CZ2 1445 aa17.89■□□□□ 0.45
USF1-202ENST00000368020 ATF7IPQ6VMQ6 1270 aa17.89■□□□□ 0.45
USF1-202ENST00000368020 RWDD1Q9H446 243 aaPredicted RBP17.89■□□□□ 0.45
USF1-202ENST00000368020 ARHGEF10O15013 1369 aa17.88■□□□□ 0.45
USF1-202ENST00000368020 KIF24Q5T7B8 1368 aa17.88■□□□□ 0.45
USF1-202ENST00000368020 HMOX1P09601 288 aa17.88■□□□□ 0.45
USF1-202ENST00000368020 HAP1P54257 671 aaPredicted RBP17.88■□□□□ 0.45
USF1-202ENST00000368020 RRS1Q15050 365 aaKnown RBP17.88■□□□□ 0.45
USF1-202ENST00000368020 BCL2L13Q9BXK5 485 aa17.88■□□□□ 0.45
USF1-202ENST00000368020 SSH1Q8WYL5 1049 aa17.87■□□□□ 0.45
USF1-202ENST00000368020 DDRGK1Q96HY6 314 aa17.87■□□□□ 0.45
USF1-202ENST00000368020 ZBTB47Q9UFB7 747 aaPredicted RBP17.87■□□□□ 0.45
USF1-202ENST00000368020 FBLN1P23142 703 aa17.86■□□□□ 0.45
USF1-202ENST00000368020 PEAK1Q9H792 1746 aa17.86■□□□□ 0.45
USF1-202ENST00000368020 MARF1Q9Y4F3 1742 aaKnown RBP17.86■□□□□ 0.45
USF1-202ENST00000368020 RLBP1P12271 317 aa17.86■□□□□ 0.45
USF1-202ENST00000368020 PHACTR3Q96KR7 559 aa17.86■□□□□ 0.45
USF1-202ENST00000368020 USP19O94966 1318 aa17.85■□□□□ 0.45
USF1-202ENST00000368020 KCNH5Q8NCM2 988 aa17.85■□□□□ 0.45
USF1-202ENST00000368020 FLT4P35916 1363 aa17.85■□□□□ 0.45
USF1-202ENST00000368020 IGHDP01880 384 aa17.84■□□□□ 0.45
USF1-202ENST00000368020 ZNF853P0CG23 659 aa17.84■□□□□ 0.45
USF1-202ENST00000368020 TRIM27P14373 513 aa17.84■□□□□ 0.45
USF1-202ENST00000368020 ARHGAP45Q92619 1136 aa17.84■□□□□ 0.45
USF1-202ENST00000368020 LRRC59Q96AG4 307 aaKnown RBP17.84■□□□□ 0.45
USF1-202ENST00000368020 CFAP44Q96MT7 982 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms