RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ERBINQ96RT1 1412 aa18.58■□□□□ 0.56
PTPRF-201ENST00000359947 IGHMBP2P38935 993 aaKnown RBP18.58■□□□□ 0.56
PTPRF-201ENST00000359947 HIP1O00291 1037 aa18.57■□□□□ 0.56
PTPRF-201ENST00000359947 MAGEC2Q9UBF1 373 aaPredicted RBP18.57■□□□□ 0.56
PTPRF-201ENST00000359947 NAT10Q9H0A0 1025 aaKnown RBP18.57■□□□□ 0.56
PTPRF-201ENST00000359947 STARD3NLO95772 234 aa18.57■□□□□ 0.56
PTPRF-201ENST00000359947 ANKIB1Q9P2G1 1089 aa18.57■□□□□ 0.56
PTPRF-201ENST00000359947 SOGA3Q5TF21 947 aa18.57■□□□□ 0.56
PTPRF-201ENST00000359947 C9orf84Q5VXU9 1444 aa18.57■□□□□ 0.56
PTPRF-201ENST00000359947 SMC2O95347 1197 aa18.56■□□□□ 0.56
PTPRF-201ENST00000359947 TMOD3Q9NYL9 352 aa18.56■□□□□ 0.56
PTPRF-201ENST00000359947 PDCL3Q9H2J4 239 aa18.56■□□□□ 0.56
PTPRF-201ENST00000359947 SLC52A1Q9NWF4 448 aa18.56■□□□□ 0.56
PTPRF-201ENST00000359947 IDH1O75874 414 aaKnown RBP18.56■□□□□ 0.56
PTPRF-201ENST00000359947 GSE1Q14687 1217 aa18.56■□□□□ 0.56
PTPRF-201ENST00000359947 PNISRQ8TF01 805 aaKnown RBP18.56■□□□□ 0.56
PTPRF-201ENST00000359947 SSBP05455 408 aaKnown RBP eCLIP18.56■□□□□ 0.56
PTPRF-201ENST00000359947 LRRCC1Q9C099 1032 aa18.56■□□□□ 0.56
PTPRF-201ENST00000359947 CEBPAP49715 358 aaPredicted RBP18.55■□□□□ 0.56
PTPRF-201ENST00000359947 SETQ01105 290 aaPredicted RBP18.55■□□□□ 0.56
PTPRF-201ENST00000359947 ZNF76P36508 570 aa18.55■□□□□ 0.56
PTPRF-201ENST00000359947 SRGAP3O43295 1099 aa18.55■□□□□ 0.56
PTPRF-201ENST00000359947 STK38Q15208 465 aa18.54■□□□□ 0.56
PTPRF-201ENST00000359947 NUDT16Q96DE0 195 aaKnown RBP18.54■□□□□ 0.56
PTPRF-201ENST00000359947 KINO60870 393 aaKnown RBP18.54■□□□□ 0.56
PTPRF-201ENST00000359947 KAT6BQ8WYB5 2073 aa18.54■□□□□ 0.56
PTPRF-201ENST00000359947 CCT4P50991 539 aaKnown RBP18.54■□□□□ 0.56
PTPRF-201ENST00000359947 WDR78Q5VTH9 848 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 CEP126Q9P2H0 1117 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 TRIM22Q8IYM9 498 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 TMOD2Q9NZR1 351 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 FIBPO43427 364 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 FOXO3O43524 673 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 IL1RAPL2Q9NP60 686 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 MRC2Q9UBG0 1479 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 SNAPC4Q5SXM2 1469 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 CCDC173Q0VFZ6 552 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 TANGO6Q9C0B7 1094 aa18.53■□□□□ 0.56
PTPRF-201ENST00000359947 PDZRN3Q9UPQ7 1066 aa18.52■□□□□ 0.56
PTPRF-201ENST00000359947 MNS1Q8NEH6 495 aa18.52■□□□□ 0.56
PTPRF-201ENST00000359947 HSP90AA2PQ14568 343 aaPredicted RBP18.52■□□□□ 0.55
PTPRF-201ENST00000359947 METTL24Q5JXM2 366 aa18.51■□□□□ 0.55
PTPRF-201ENST00000359947 CASKIN1Q8WXD9 1431 aa18.51■□□□□ 0.55
PTPRF-201ENST00000359947 CWC27Q6UX04 472 aaKnown RBP18.51■□□□□ 0.55
PTPRF-201ENST00000359947 GNAT3A8MTJ3 354 aa18.51■□□□□ 0.55
PTPRF-201ENST00000359947 UBAC1Q9BSL1 405 aa18.51■□□□□ 0.55
PTPRF-201ENST00000359947 MCM10Q7L590 875 aa18.51■□□□□ 0.55
PTPRF-201ENST00000359947 ZSCAN25Q6NSZ9 544 aa18.5■□□□□ 0.55
PTPRF-201ENST00000359947 ZNF652Q9Y2D9 606 aa18.5■□□□□ 0.55
PTPRF-201ENST00000359947 CYP46A1Q9Y6A2 500 aa18.5■□□□□ 0.55
PTPRF-201ENST00000359947 CRACR2BQ8N4Y2 399 aaPredicted RBP18.49■□□□□ 0.55
PTPRF-201ENST00000359947 DCTN1Q14203 1278 aa18.49■□□□□ 0.55
PTPRF-201ENST00000359947 TRIM5Q9C035 493 aa18.49■□□□□ 0.55
PTPRF-201ENST00000359947 KIF21BO75037 1637 aa18.49■□□□□ 0.55
PTPRF-201ENST00000359947 ZNF396Q96N95 335 aaPredicted RBP18.48■□□□□ 0.55
PTPRF-201ENST00000359947 FILIP1LQ4L180 1135 aa18.48■□□□□ 0.55
PTPRF-201ENST00000359947 AK7Q96M32 723 aa18.48■□□□□ 0.55
PTPRF-201ENST00000359947 THUMPD2Q9BTF0 503 aaKnown RBP18.48■□□□□ 0.55
PTPRF-201ENST00000359947 SEPT11Q9NVA2 429 aaKnown RBP18.48■□□□□ 0.55
PTPRF-201ENST00000359947 CAVIN1Q6NZI2 390 aaKnown RBP18.48■□□□□ 0.55
PTPRF-201ENST00000359947 POLR3DP05423 398 aaPredicted RBP18.47■□□□□ 0.55
PTPRF-201ENST00000359947 ZNF771Q7L3S4 317 aaPredicted RBP18.47■□□□□ 0.55
PTPRF-201ENST00000359947 BRD4O60885 1362 aaPredicted RBP18.47■□□□□ 0.55
PTPRF-201ENST00000359947 MINDY4BA8MYZ0 360 aa18.47■□□□□ 0.55
PTPRF-201ENST00000359947 PRPF40AO75400 957 aaKnown RBP18.47■□□□□ 0.55
PTPRF-201ENST00000359947 ME1P48163 572 aa18.47■□□□□ 0.55
PTPRF-201ENST00000359947 AIDAQ96BJ3 306 aa18.47■□□□□ 0.55
PTPRF-201ENST00000359947 GRM1Q13255 1194 aa18.46■□□□□ 0.55
PTPRF-201ENST00000359947 RPGRQ92834 1020 aaKnown RBP18.46■□□□□ 0.55
PTPRF-201ENST00000359947 MYD88Q99836 296 aa18.46■□□□□ 0.55
PTPRF-201ENST00000359947 NUTM1Q86Y26 1132 aa18.46■□□□□ 0.55
PTPRF-201ENST00000359947 KCNH5Q8NCM2 988 aa18.46■□□□□ 0.55
PTPRF-201ENST00000359947 CC2D2AQ9P2K1 1620 aa18.46■□□□□ 0.55
PTPRF-201ENST00000359947 RDXP35241 583 aaKnown RBP18.46■□□□□ 0.55
PTPRF-201ENST00000359947 SCLT1Q96NL6 688 aa18.46■□□□□ 0.55
PTPRF-201ENST00000359947 WWC3Q9ULE0 1092 aa18.45■□□□□ 0.54
PTPRF-201ENST00000359947 CAVIN4Q5BKX8 364 aa18.45■□□□□ 0.54
PTPRF-201ENST00000359947 GCC1Q96CN9 775 aa18.45■□□□□ 0.54
PTPRF-201ENST00000359947 FAM13BQ9NYF5 915 aa18.44■□□□□ 0.54
PTPRF-201ENST00000359947 PDCP20941 246 aa18.44■□□□□ 0.54
PTPRF-201ENST00000359947 GPTP24298 496 aa18.44■□□□□ 0.54
PTPRF-201ENST00000359947 CCDC61Q9Y6R9 512 aa18.44■□□□□ 0.54
PTPRF-201ENST00000359947 SLC4A8Q2Y0W8 1093 aa18.44■□□□□ 0.54
PTPRF-201ENST00000359947 SPC24Q8NBT2 197 aa18.44■□□□□ 0.54
PTPRF-201ENST00000359947 IFT140Q96RY7 1462 aa18.44■□□□□ 0.54
PTPRF-201ENST00000359947 VSIG10Q8N0Z9 540 aa18.43■□□□□ 0.54
PTPRF-201ENST00000359947 SMARCE1Q969G3 411 aa18.43■□□□□ 0.54
PTPRF-201ENST00000359947 MKNK2Q9HBH9 465 aa18.43■□□□□ 0.54
PTPRF-201ENST00000359947 SERPINC1P01008 464 aa18.42■□□□□ 0.54
PTPRF-201ENST00000359947 FBXO31Q5XUX0 539 aaPredicted RBP18.42■□□□□ 0.54
PTPRF-201ENST00000359947 DZIP1Q86YF9 867 aaKnown RBP18.42■□□□□ 0.54
PTPRF-201ENST00000359947 DEF6Q9H4E7 631 aa18.42■□□□□ 0.54
PTPRF-201ENST00000359947 CDR1P51861 262 aa18.42■□□□□ 0.54
PTPRF-201ENST00000359947 TRMT1LQ7Z2T5 733 aaKnown RBP18.42■□□□□ 0.54
PTPRF-201ENST00000359947 TRMT112Q9UI30 125 aaKnown RBP18.42■□□□□ 0.54
PTPRF-201ENST00000359947 AMOTL2Q9Y2J4 779 aa18.42■□□□□ 0.54
PTPRF-201ENST00000359947 EXOC5O00471 708 aa18.41■□□□□ 0.54
PTPRF-201ENST00000359947 ZNF622Q969S3 477 aaKnown RBP eCLIP18.41■□□□□ 0.54
PTPRF-201ENST00000359947 JAKMIP1Q96N16 626 aaKnown RBP18.41■□□□□ 0.54
PTPRF-201ENST00000359947 PLEKHH2Q8IVE3 1493 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms