RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 ZNF396Q96N95 335 aaPredicted RBP7.24□□□□□ -1.25
VCAN-203ENST00000343200 TOMM22Q9NS69 142 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 KIF5CO60282 957 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 KIF5BP33176 963 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 CCDC158Q5M9N0 1113 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 CEP112Q8N8E3 955 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 NSRP1Q9H0G5 558 aaKnown RBP7.24□□□□□ -1.25
VCAN-203ENST00000343200 A0A1B0GUL7 405 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 CEP128Q6ZU80 1094 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 CEP57Q86XR8 500 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 FMNL3Q8IVF7 1028 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 DDX19BQ9UMR2 479 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 CCDC174Q6PII3 467 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 SFPQP23246 707 aaKnown RBP eCLIP7.24□□□□□ -1.25
VCAN-203ENST00000343200 IFFO1Q0D2I5 559 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 XBP1P17861 261 aa7.24□□□□□ -1.25
VCAN-203ENST00000343200 PRPF40AO75400 957 aaKnown RBP7.23□□□□□ -1.25
VCAN-203ENST00000343200 PSMA5P28066 241 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 ERC1Q8IUD2 1116 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 SMARCC1Q92922 1105 aaPredicted RBP7.23□□□□□ -1.25
VCAN-203ENST00000343200 TUBB4BP68371 445 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 RBBP5Q15291 538 aaKnown RBP7.23□□□□□ -1.25
VCAN-203ENST00000343200 SCLT1Q96NL6 688 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 AMOTL1Q8IY63 956 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.23□□□□□ -1.25
VCAN-203ENST00000343200 TRDNQ13061 729 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 ZFP91Q96JP5 570 aaPredicted RBP7.23□□□□□ -1.25
VCAN-203ENST00000343200 IBSPP21815 317 aaPredicted RBP7.23□□□□□ -1.25
VCAN-203ENST00000343200 WHAMMP3Q1A5X7 153 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 LMOD2Q6P5Q4 547 aa7.23□□□□□ -1.25
VCAN-203ENST00000343200 EPB41L2O43491 1005 aaKnown RBP7.22□□□□□ -1.25
VCAN-203ENST00000343200 DHX16O60231 1041 aaKnown RBP7.22□□□□□ -1.25
VCAN-203ENST00000343200 FAM177A1Q8N128 213 aaPredicted RBP7.22□□□□□ -1.25
VCAN-203ENST00000343200 ZNF622Q969S3 477 aaKnown RBP eCLIP7.22□□□□□ -1.25
VCAN-203ENST00000343200 TRERF1Q96PN7 1200 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 POGKQ9P215 609 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 CCDC171Q6TFL3 1326 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 MYBBP1AQ9BQG0 1328 aaKnown RBP7.22□□□□□ -1.25
VCAN-203ENST00000343200 NEMFO60524 1076 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 ZNF365Q70YC5 407 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 DZIP1LQ8IYY4 767 aaKnown RBP7.22□□□□□ -1.25
VCAN-203ENST00000343200 ZNF397Q8NF99 534 aaPredicted RBP7.22□□□□□ -1.25
VCAN-203ENST00000343200 BANK1Q8NDB2 785 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 CNKSR2Q8WXI2 1034 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 SMC6Q96SB8 1091 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 ARFGAP3Q9NP61 516 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 TACC1O75410 805 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 C10orf67Q8IYJ2 551 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 TAOK3Q9H2K8 898 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 SOGA3Q5TF21 947 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 RABGAP1Q9Y3P9 1069 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 AP1ARQ63HQ0 302 aa7.22□□□□□ -1.25
VCAN-203ENST00000343200 CEP57L1Q8IYX8 460 aa7.21□□□□□ -1.25
VCAN-203ENST00000343200 PPFIBP2Q8ND30 876 aa7.21□□□□□ -1.25
VCAN-203ENST00000343200 USH1CQ9Y6N9 552 aa7.21□□□□□ -1.25
VCAN-203ENST00000343200 ERICH2A1L162 156 aa7.21□□□□□ -1.25
VCAN-203ENST00000343200 SUPT6HQ7KZ85 1726 aaKnown RBP7.21□□□□□ -1.25
VCAN-203ENST00000343200 PLEKHG5O94827 1062 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 CCDC83Q8IWF9 413 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 HYPKQ9NX55 129 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 MAP2K2P36507 400 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 CIZ1Q9ULV3 898 aaPredicted RBP7.21□□□□□ -1.26
VCAN-203ENST00000343200 DESP17661 470 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 B4GALNT4Q76KP1 1039 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 CEP120Q8N960 986 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 BAZ1BQ9UIG0 1483 aaKnown RBP7.21□□□□□ -1.26
VCAN-203ENST00000343200 EBAG9O00559 213 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 ZNF853P0CG23 659 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 STMN1P16949 149 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 ZKSCAN2Q63HK3 967 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 CCDC121Q6ZUS5 278 aa7.21□□□□□ -1.26
VCAN-203ENST00000343200 LUC7L2Q9Y383 392 aaKnown RBP7.21□□□□□ -1.26
VCAN-203ENST00000343200 WDR33Q9C0J8 1336 aaKnown RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 U2AF1L5P0DN76 240 aaPredicted RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 U2AF1Q01081 240 aaKnown RBP eCLIP7.2□□□□□ -1.26
VCAN-203ENST00000343200 RGL3Q3MIN7 710 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 C16orf45Q96MC5 204 aaPredicted RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 GRIPAP1Q4V328 841 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 CCDC38Q502W7 563 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 FBF1Q8TES7 1133 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 ATP11AP98196 1134 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 DDX12PQ92771 950 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 STMN4Q9H169 189 aaPredicted RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 PLEKHH1Q9ULM0 1364 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 NEBLO76041 1014 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 SREK1Q8WXA9 508 aaKnown RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 CWC25Q9NXE8 425 aaPredicted RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 FEZ2Q9UHY8 353 aaPredicted RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 KLHL10Q6JEL2 608 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 CCDC113Q9H0I3 377 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 NAA15Q9BXJ9 866 aaKnown RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 SPDYE4A6NLX3 237 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 BRPF1P55201 1214 aaPredicted RBP7.2□□□□□ -1.26
VCAN-203ENST00000343200 EHBP1Q8NDI1 1231 aa7.2□□□□□ -1.26
VCAN-203ENST00000343200 POLR1AO95602 1720 aaPredicted RBP7.19□□□□□ -1.26
VCAN-203ENST00000343200 NFXL1Q6ZNB6 911 aa7.19□□□□□ -1.26
VCAN-203ENST00000343200 RNF8O76064 485 aa7.19□□□□□ -1.26
VCAN-203ENST00000343200 GSDMDP57764 484 aa7.19□□□□□ -1.26
VCAN-203ENST00000343200 POTEDQ86YR6 584 aa7.19□□□□□ -1.26
VCAN-203ENST00000343200 GBP7Q8N8V2 638 aaPredicted RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms