RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 SPATA31A1Q5TZJ5 1347 aa26.45■■□□□ 1.83
SYNE4-202ENST00000340477 FAM98CQ17RN3 349 aaKnown RBP26.45■■□□□ 1.82
SYNE4-202ENST00000340477 FYB1O15117 783 aa26.44■■□□□ 1.82
SYNE4-202ENST00000340477 SEPT12Q8IYM1 358 aa26.44■■□□□ 1.82
SYNE4-202ENST00000340477 GGNBP2Q9H3C7 697 aa26.44■■□□□ 1.82
SYNE4-202ENST00000340477 CRB1P82279 1406 aa26.44■■□□□ 1.82
SYNE4-202ENST00000340477 LARP1Q6PKG0 1096 aaKnown RBP26.43■■□□□ 1.82
SYNE4-202ENST00000340477 CARD14Q9BXL6 1004 aa26.43■■□□□ 1.82
SYNE4-202ENST00000340477 USP35Q9P2H5 1018 aa26.43■■□□□ 1.82
SYNE4-202ENST00000340477 BRWD3Q6RI45 1802 aa26.43■■□□□ 1.82
SYNE4-202ENST00000340477 KIF7Q2M1P5 1343 aa26.42■■□□□ 1.82
SYNE4-202ENST00000340477 CSB-PGBD3P0DP91 1061 aa26.42■■□□□ 1.82
SYNE4-202ENST00000340477 C11orf95C9JLR9 678 aaPredicted RBP26.41■■□□□ 1.82
SYNE4-202ENST00000340477 ONECUT3O60422 494 aaPredicted RBP26.41■■□□□ 1.82
SYNE4-202ENST00000340477 TOM1L2Q6ZVM7 507 aa26.41■■□□□ 1.82
SYNE4-202ENST00000340477 THSD7AQ9UPZ6 1657 aa26.4■■□□□ 1.82
SYNE4-202ENST00000340477 WDR17Q8IZU2 1322 aa26.39■■□□□ 1.82
SYNE4-202ENST00000340477 ANKRD26Q9UPS8 1709 aa26.39■■□□□ 1.82
SYNE4-202ENST00000340477 TCP11L2Q8N4U5 519 aa26.39■■□□□ 1.82
SYNE4-202ENST00000340477 PANK3Q9H999 370 aa26.39■■□□□ 1.82
SYNE4-202ENST00000340477 THRAP3Q9Y2W1 955 aaKnown RBP26.39■■□□□ 1.82
SYNE4-202ENST00000340477 AXIN2Q9Y2T1 843 aa26.38■■□□□ 1.81
SYNE4-202ENST00000340477 BLMP54132 1417 aaPredicted RBP26.38■■□□□ 1.81
SYNE4-202ENST00000340477 AMPHP49418 695 aa26.37■■□□□ 1.81
SYNE4-202ENST00000340477 BARGINQ6ZT62 677 aa26.36■■□□□ 1.81
SYNE4-202ENST00000340477 RTL1A6NKG5 1358 aa26.35■■□□□ 1.81
SYNE4-202ENST00000340477 FAM208AQ9UK61 1670 aaKnown RBP26.35■■□□□ 1.81
SYNE4-202ENST00000340477 KRT27Q7Z3Y8 459 aa26.35■■□□□ 1.81
SYNE4-202ENST00000340477 WNK3Q9BYP7 1800 aa26.34■■□□□ 1.81
SYNE4-202ENST00000340477 MAP3K19Q56UN5 1328 aa26.34■■□□□ 1.81
SYNE4-202ENST00000340477 NSD2O96028 1365 aa26.33■■□□□ 1.81
SYNE4-202ENST00000340477 CCDC7Q96M83 1385 aa26.33■■□□□ 1.81
SYNE4-202ENST00000340477 IP6K1Q92551 441 aa26.33■■□□□ 1.81
SYNE4-202ENST00000340477 KNSTRNQ9Y448 316 aa26.33■■□□□ 1.81
SYNE4-202ENST00000340477 ERBB3P21860 1342 aa26.33■■□□□ 1.81
SYNE4-202ENST00000340477 UPF1Q92900 1129 aaKnown RBP eCLIP26.32■■□□□ 1.8
SYNE4-202ENST00000340477 PARP4Q9UKK3 1724 aaKnown RBP26.31■■□□□ 1.8
SYNE4-202ENST00000340477 ANKRD24Q8TF21 1146 aa26.31■■□□□ 1.8
SYNE4-202ENST00000340477 CARD10Q9BWT7 1032 aa26.3■■□□□ 1.8
SYNE4-202ENST00000340477 SMG6Q86US8 1419 aaKnown RBP26.3■■□□□ 1.8
SYNE4-202ENST00000340477 RRS1Q15050 365 aaKnown RBP26.29■■□□□ 1.8
SYNE4-202ENST00000340477 NLRP2Q9NX02 1062 aa26.29■■□□□ 1.8
SYNE4-202ENST00000340477 KIF24Q5T7B8 1368 aa26.29■■□□□ 1.8
SYNE4-202ENST00000340477 HOXC9P31274 260 aa26.28■■□□□ 1.8
SYNE4-202ENST00000340477 CDCA7Q9BWT1 371 aaPredicted RBP26.28■■□□□ 1.8
SYNE4-202ENST00000340477 PDE3BQ13370 1112 aa26.27■■□□□ 1.8
SYNE4-202ENST00000340477 WASHC2AQ641Q2 1341 aa26.27■■□□□ 1.8
SYNE4-202ENST00000340477 FLT4P35916 1363 aa26.27■■□□□ 1.8
SYNE4-202ENST00000340477 FBLN1P23142 703 aa26.26■■□□□ 1.79
SYNE4-202ENST00000340477 ZEB1P37275 1124 aaPredicted RBP26.26■■□□□ 1.79
SYNE4-202ENST00000340477 LTV1Q96GA3 475 aaPredicted RBP26.26■■□□□ 1.79
SYNE4-202ENST00000340477 MAP2P11137 1827 aaKnown RBP26.25■■□□□ 1.79
SYNE4-202ENST00000340477 LRRC37A3O60309 1634 aa26.25■■□□□ 1.79
SYNE4-202ENST00000340477 CCDC125Q86Z20 511 aa26.23■■□□□ 1.79
SYNE4-202ENST00000340477 PEAK1Q9H792 1746 aa26.22■■□□□ 1.79
SYNE4-202ENST00000340477 MORC1Q86VD1 984 aa26.22■■□□□ 1.79
SYNE4-202ENST00000340477 PPM1GO15355 546 aaPredicted RBP26.21■■□□□ 1.79
SYNE4-202ENST00000340477 SF3B2Q13435 895 aaKnown RBP26.21■■□□□ 1.79
SYNE4-202ENST00000340477 DDB1Q16531 1140 aa26.21■■□□□ 1.79
SYNE4-202ENST00000340477 TNNT2P45379 298 aaPredicted RBP26.2■■□□□ 1.78
SYNE4-202ENST00000340477 EP400Q96L91 3159 aa26.2■■□□□ 1.78
SYNE4-202ENST00000340477 INSRP06213 1382 aa26.2■■□□□ 1.78
SYNE4-202ENST00000340477 EMILIN1Q9Y6C2 1016 aa26.19■■□□□ 1.78
SYNE4-202ENST00000340477 RGPD1P0DJD0 1748 aa26.19■■□□□ 1.78
SYNE4-202ENST00000340477 DISP2A7MBM2 1401 aa26.18■■□□□ 1.78
SYNE4-202ENST00000340477 FAM196AQ6ZSG2 479 aa26.17■■□□□ 1.78
SYNE4-202ENST00000340477 RGPD2P0DJD1 1756 aa26.17■■□□□ 1.78
SYNE4-202ENST00000340477 IL2RBP14784 551 aa26.16■■□□□ 1.78
SYNE4-202ENST00000340477 HSP90AB2PQ58FF8 381 aa26.15■■□□□ 1.78
SYNE4-202ENST00000340477 FAM182BQ5T319 152 aa26.15■■□□□ 1.78
SYNE4-202ENST00000340477 OVOS2A0A0G2JMS6 1433 aa26.14■■□□□ 1.78
SYNE4-202ENST00000340477 TNS2Q63HR2 1409 aa26.14■■□□□ 1.78
SYNE4-202ENST00000340477 EXOC5O00471 708 aa26.14■■□□□ 1.78
SYNE4-202ENST00000340477 AMER1Q5JTC6 1135 aaPredicted RBP26.14■■□□□ 1.78
SYNE4-202ENST00000340477 POLKQ9UBT6 870 aa26.13■■□□□ 1.77
SYNE4-202ENST00000340477 PER1O15534 1290 aaPredicted RBP26.1■■□□□ 1.77
SYNE4-202ENST00000340477 NPC1L1Q9UHC9 1359 aa26.09■■□□□ 1.77
SYNE4-202ENST00000340477 CC2D1BQ5T0F9 858 aaKnown RBP26.09■■□□□ 1.77
SYNE4-202ENST00000340477 TNS1Q9HBL0 1735 aaKnown RBP26.08■■□□□ 1.76
SYNE4-202ENST00000340477 BAG6P46379 1132 aa26.07■■□□□ 1.76
SYNE4-202ENST00000340477 NBPF6Q5VWK0 638 aa26.06■■□□□ 1.76
SYNE4-202ENST00000340477 RAPGEF4Q8WZA2 1011 aa26.06■■□□□ 1.76
SYNE4-202ENST00000340477 NBPF4Q96M43 638 aa26.06■■□□□ 1.76
SYNE4-202ENST00000340477 TRIM37O94972 964 aa26.04■■□□□ 1.76
SYNE4-202ENST00000340477 USHBP1Q8N6Y0 703 aa26.04■■□□□ 1.76
SYNE4-202ENST00000340477 SBF2Q86WG5 1849 aa26.03■■□□□ 1.76
SYNE4-202ENST00000340477 TATP17735 454 aaPredicted RBP26.03■■□□□ 1.76
SYNE4-202ENST00000340477 CNGB1Q14028 1251 aaPredicted RBP26.03■■□□□ 1.76
SYNE4-202ENST00000340477 MARCH10Q8NA82 808 aaPredicted RBP26.03■■□□□ 1.76
SYNE4-202ENST00000340477 MEGF6O75095 1541 aa26.02■■□□□ 1.76
SYNE4-202ENST00000340477 BCL9O00512 1426 aa26.01■■□□□ 1.75
SYNE4-202ENST00000340477 EIF4A2Q14240 407 aaKnown RBP26■■□□□ 1.75
SYNE4-202ENST00000340477 DEFB132Q7Z7B7 95 aa25.98■■□□□ 1.75
SYNE4-202ENST00000340477 ZCRB1Q8TBF4 217 aaKnown RBP25.98■■□□□ 1.75
SYNE4-202ENST00000340477 APBA3O96018 575 aa25.97■■□□□ 1.75
SYNE4-202ENST00000340477 DDX54Q8TDD1 881 aaKnown RBP25.97■■□□□ 1.75
SYNE4-202ENST00000340477 NCAPD2Q15021 1401 aa25.97■■□□□ 1.75
SYNE4-202ENST00000340477 EYA1Q99502 592 aa25.96■■□□□ 1.75
SYNE4-202ENST00000340477 SHANK3Q9BYB0 1731 aa25.96■■□□□ 1.75
SYNE4-202ENST00000340477 NHSQ6T4R5 1651 aa25.95■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms